1w6w - Revision history

OCA at 13:18, 13 December 2023

OCA — Wed, 13 Dec 2023 13:18:21 GMT

←Older revision		Revision as of 13:18, 13 December 2023
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	<StructureSection load='1w6w' size='340' side='right'caption='[[1w6w]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1w6w' size='340' side='right'caption='[[1w6w]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1w6w]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"vibrio_subtilis"_ehrenberg_1835 "vibrio~~ subtilis~~" ehrenberg 1835~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W6W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1W6W FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1w6w]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W6W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1W6W FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.2Å</td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1gsk\|1gsk]], [[1hkp\|1hkp]], [[1hkz\|1hkz]], [[1hl0\|1hl0]], [[1hl1\|1hl1]], [[1of0\|1of0]], [[1ogr\|1ogr]], [[1uvw\|1uvw]], [[1w6l\|1w6l]], [[1w8e\|1w8e]]</div></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1w6w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w6w OCA], [https://pdbe.org/1w6w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1w6w RCSB], [https://www.ebi.ac.uk/pdbsum/1w6w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1w6w ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1w6w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w6w OCA], [https://pdbe.org/1w6w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1w6w RCSB], [https://www.ebi.ac.uk/pdbsum/1w6w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1w6w ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/COTA_BACSU COTA_BACSU]] Involved in brown pigmentation during sporogenesis.	+	[https://www.uniprot.org/uniprot/COTA_BACSU COTA_BACSU] Involved in brown pigmentation during sporogenesis.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 36:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Vibrio~~ subtilis ~~ehrenberg 1835~~]]	+	[[Category: Bacillus subtilis]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Bento, I]]	+	[[Category: Bento I]]
-	[[Category: Carrondo~~, M A~~]]	+	[[Category: Carrondo MA]]
-	[[Category: Lindley~~, P F~~]]	+	[[Category: Lindley PF]]
-	[[Category: Lopes~~, G G~~]]	+	[[Category: Lopes GG]]
-	[[Category: Martins~~, L O]]~~	+	[[Category: Martins LO]]
-	~~[[Category: Laccase]]~~	+
-	~~[[Category: Multicopper-oxidase]]~~	+
-	~~[[Category: Oxidase]]~~	+
-	~~[[Category: Oxygen reduction~~]]	+

OCA at 13:33, 13 October 2021

OCA — Wed, 13 Oct 2021 13:33:20 GMT

←Older revision		Revision as of 13:33, 13 October 2021
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	<StructureSection load='1w6w' size='340' side='right'caption='[[1w6w]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1w6w' size='340' side='right'caption='[[1w6w]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1w6w]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W6W OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1W6W FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1w6w]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W6W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1W6W FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gsk\|1gsk]], [[1hkp\|1hkp]], [[1hkz\|1hkz]], [[1hl0\|1hl0]], [[1hl1\|1hl1]], [[1of0\|1of0]], [[1ogr\|1ogr]], [[1uvw\|1uvw]], [[1w6l\|1w6l]], [[1w8e\|1w8e]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1gsk\|1gsk]], [[1hkp\|1hkp]], [[1hkz\|1hkz]], [[1hl0\|1hl0]], [[1hl1\|1hl1]], [[1of0\|1of0]], [[1ogr\|1ogr]], [[1uvw\|1uvw]], [[1w6l\|1w6l]], [[1w8e\|1w8e]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1w6w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w6w OCA], [~~http~~://pdbe.org/1w6w PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1w6w RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1w6w PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1w6w ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1w6w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w6w OCA], [https://pdbe.org/1w6w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1w6w RCSB], [https://www.ebi.ac.uk/pdbsum/1w6w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1w6w ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/COTA_BACSU COTA_BACSU]] Involved in brown pigmentation during sporogenesis.	+	[[https://www.uniprot.org/uniprot/COTA_BACSU COTA_BACSU]] Involved in brown pigmentation during sporogenesis.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 10:12, 8 January 2020

OCA — Wed, 08 Jan 2020 10:12:19 GMT

←Older revision		Revision as of 10:12, 8 January 2020
Line 1:		Line 1:

	==3D structure of CotA incubated with sodium azide==		==3D structure of CotA incubated with sodium azide==
-	<StructureSection load='1w6w' size='340' side='right' caption='[[1w6w]], [[Resolution\|resolution]] 2.20Å' scene=''>	+	<StructureSection load='1w6w' size='340' side='right'caption='[[1w6w]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1w6w]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W6W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1W6W FirstGlance]. <br>		<table><tr><td colspan='2'>[[1w6w]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W6W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1W6W FirstGlance]. <br>
Line 31:		Line 31:

	==See Also==		==See Also==
-	*[[~~CotA laccase~~\|~~CotA laccase~~]]	+	*[[Laccase 3D structures\|Laccase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 37:		Line 37:
	</StructureSection>		</StructureSection>
	[[Category: Vibrio subtilis ehrenberg 1835]]		[[Category: Vibrio subtilis ehrenberg 1835]]
		+	[[Category: Large Structures]]
	[[Category: Bento, I]]		[[Category: Bento, I]]
	[[Category: Carrondo, M A]]		[[Category: Carrondo, M A]]

OCA at 07:18, 4 April 2018

OCA — Wed, 04 Apr 2018 07:18:40 GMT

←Older revision		Revision as of 07:18, 4 April 2018
Line 1:		Line 1:
-	==3D ~~STRUCTURE OF COTA INCUBATED WITH SODIUM AZIDE~~==	+
		+	==3D structure of CotA incubated with sodium azide==
	<StructureSection load='1w6w' size='340' side='right' caption='[[1w6w]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1w6w' size='340' side='right' caption='[[1w6w]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1w6w]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"~~bacillus_globigii~~"~~_migula_1900~~ "~~bacillus globigii~~" ~~migula 1900~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W6W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1W6W FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1w6w]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W6W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1W6W FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gsk\|1gsk]], [[1hkp\|1hkp]], [[1hkz\|1hkz]], [[1hl0\|1hl0]], [[1hl1\|1hl1]], [[1of0\|1of0]], [[1ogr\|1ogr]], [[1uvw\|1uvw]], [[1w6l\|1w6l]], [[1w8e\|1w8e]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gsk\|1gsk]], [[1hkp\|1hkp]], [[1hkz\|1hkz]], [[1hl0\|1hl0]], [[1hl1\|1hl1]], [[1of0\|1of0]], [[1ogr\|1ogr]], [[1uvw\|1uvw]], [[1w6l\|1w6l]], [[1w8e\|1w8e]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1w6w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w6w OCA], [http://pdbe.org/1w6w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1w6w RCSB], [http://www.ebi.ac.uk/pdbsum/1w6w PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1w6w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w6w OCA], [http://pdbe.org/1w6w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1w6w RCSB], [http://www.ebi.ac.uk/pdbsum/1w6w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1w6w ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/w6/1w6w_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/w6/1w6w_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1w6w ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 35:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus globigii migula 1900~~]]	+	[[Category: Vibrio subtilis ehrenberg 1835]]
	[[Category: Bento, I]]		[[Category: Bento, I]]
	[[Category: Carrondo, M A]]		[[Category: Carrondo, M A]]

OCA at 21:50, 11 September 2015

OCA — Fri, 11 Sep 2015 21:50:17 GMT

←Older revision		Revision as of 21:50, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1w6w' size='340' side='right' caption='[[1w6w]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1w6w' size='340' side='right' caption='[[1w6w]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1w6w]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bacillus_subtilis Bacillus subtilis~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W6W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1W6W FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1w6w]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_globigii"_migula_1900 "bacillus globigii" migula 1900]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W6W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1W6W FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gsk\|1gsk]], [[1hkp\|1hkp]], [[1hkz\|1hkz]], [[1hl0\|1hl0]], [[1hl1\|1hl1]], [[1of0\|1of0]], [[1ogr\|1ogr]], [[1uvw\|1uvw]], [[1w6l\|1w6l]], [[1w8e\|1w8e]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gsk\|1gsk]], [[1hkp\|1hkp]], [[1hkz\|1hkz]], [[1hl0\|1hl0]], [[1hl1\|1hl1]], [[1of0\|1of0]], [[1ogr\|1ogr]], [[1uvw\|1uvw]], [[1w6l\|1w6l]], [[1w8e\|1w8e]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1w6w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w6w OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1w6w RCSB], [http://www.ebi.ac.uk/pdbsum/1w6w PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1w6w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w6w OCA], [http://pdbe.org/1w6w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1w6w RCSB], [http://www.ebi.ac.uk/pdbsum/1w6w PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1w6w" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 34:		Line 35:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Bacillus ~~subtilis~~]]	+	[[Category: Bacillus globigii migula 1900]]
	[[Category: Bento, I]]		[[Category: Bento, I]]
	[[Category: Carrondo, M A]]		[[Category: Carrondo, M A]]

OCA at 20:03, 25 December 2014

OCA — Thu, 25 Dec 2014 20:03:46 GMT

←Older revision		Revision as of 20:03, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1w6w]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W6W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1W6W FirstGlance]. <br>		<table><tr><td colspan='2'>[[1w6w]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W6W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1W6W FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gsk\|1gsk]], [[1hkp\|1hkp]], [[1hkz\|1hkz]], [[1hl0\|1hl0]], [[1hl1\|1hl1]], [[1of0\|1of0]], [[1ogr\|1ogr]], [[1uvw\|1uvw]], [[1w6l\|1w6l]], [[1w8e\|1w8e]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gsk\|1gsk]], [[1hkp\|1hkp]], [[1hkz\|1hkz]], [[1hl0\|1hl0]], [[1hl1\|1hl1]], [[1of0\|1of0]], [[1ogr\|1ogr]], [[1uvw\|1uvw]], [[1w6l\|1w6l]], [[1w8e\|1w8e]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1w6w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w6w OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1w6w RCSB], [http://www.ebi.ac.uk/pdbsum/1w6w PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1w6w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w6w OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1w6w RCSB], [http://www.ebi.ac.uk/pdbsum/1w6w PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/COTA_BACSU COTA_BACSU]] Involved in brown pigmentation during sporogenesis.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 35:
	</StructureSection>		</StructureSection>
	[[Category: Bacillus subtilis]]		[[Category: Bacillus subtilis]]
-	[[Category: Bento, I.]]	+	[[Category: Bento, I]]
-	[[Category: Carrondo, M A.]]	+	[[Category: Carrondo, M A]]
-	[[Category: Lindley, P F.]]	+	[[Category: Lindley, P F]]
-	[[Category: Lopes, G G.]]	+	[[Category: Lopes, G G]]
-	[[Category: Martins, L O.]]	+	[[Category: Martins, L O]]
	[[Category: Laccase]]		[[Category: Laccase]]
	[[Category: Multicopper-oxidase]]		[[Category: Multicopper-oxidase]]
	[[Category: Oxidase]]		[[Category: Oxidase]]
	[[Category: Oxygen reduction]]		[[Category: Oxygen reduction]]

OCA at 20:53, 28 September 2014

OCA — Sun, 28 Sep 2014 20:53:04 GMT

←Older revision		Revision as of 20:53, 28 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1w6w.~~png~~\|~~left~~\|200px]]	+	==3D STRUCTURE OF COTA INCUBATED WITH SODIUM AZIDE==
		+	<StructureSection load='1w6w' size='340' side='right' caption='[[1w6w]], [[Resolution\|resolution]] 2.20Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1w6w]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W6W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1W6W FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AZI:AZIDE+ION'>AZI</scene>, <scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1gsk\|1gsk]], [[1hkp\|1hkp]], [[1hkz\|1hkz]], [[1hl0\|1hl0]], [[1hl1\|1hl1]], [[1of0\|1of0]], [[1ogr\|1ogr]], [[1uvw\|1uvw]], [[1w6l\|1w6l]], [[1w8e\|1w8e]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1w6w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w6w OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1w6w RCSB], [http://www.ebi.ac.uk/pdbsum/1w6w PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/w6/1w6w_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The multi-copper oxidases oxidise substrate molecules by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear centre. Dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water. The precise mechanism of this reduction has been unclear, but recent X-ray structural studies using the CotA endospore coat protein from Bacillus subtilis have given further insights into the principal stages. It is proposed that the mechanism involves binding of the dioxygen into the trinuclear centre so that it is sited approximately symmetrically between the two type 3 copper ions with one oxygen atom close to the type 2 copper ion. Further stages involve the formation of a peroxide intermediate and following the splitting of this intermediate, the migration of the hydroxide moieties towards the solvent exit channel. The migration steps are likely to involve a movement of the type 2 copper ion and its environment. Details of a putative mechanism are described herein based both on structures already reported in the literature and on structures of the CotA protein in the oxidised and reduced states and with the addition of peroxide and the inhibitor, azide.

-	~~{{STRUCTURE_1w6w\| PDB=1w6w \| SCENE= }}~~	+	Dioxygen reduction by multi-copper oxidases; a structural perspective.,Bento I, Martins LO, Gato Lopes G, Armenia Carrondo M, Lindley PF Dalton Trans. 2005 Nov 7;(21):3507-13. Epub 2005 Sep 27. PMID:16234932<ref>PMID:16234932</ref>

-	~~===3D STRUCTURE OF COTA INCUBATED WITH SODIUM AZIDE===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_16234932}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1w6w]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Bacillus_subtilis Bacillus subtilis]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1W6W OCA].~~	+

	==See Also==		==See Also==
	*[[CotA laccase\|CotA laccase]]		*[[CotA laccase\|CotA laccase]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:016234932<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Bacillus subtilis]]		[[Category: Bacillus subtilis]]
	[[Category: Bento, I.]]		[[Category: Bento, I.]]

OCA at 09:51, 21 October 2012

OCA — Sun, 21 Oct 2012 09:51:34 GMT

←Older revision		Revision as of 09:51, 21 October 2012
Line 12:		Line 12:
	==See Also==		==See Also==
	*[[CotA laccase\|CotA laccase]]		*[[CotA laccase\|CotA laccase]]
-	*[[Spore coat protein\|Spore coat protein]]

	==Reference==		==Reference==

OCA at 20:53, 20 October 2012

OCA — Sat, 20 Oct 2012 20:53:59 GMT

←Older revision		Revision as of 20:53, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[1w6w]] is a 1 chain structure ~~of [[CotA laccase]]~~ with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W6W OCA].	+	[[1w6w]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W6W OCA].

	==See Also==		==See Also==
	*[[CotA laccase\|CotA laccase]]		*[[CotA laccase\|CotA laccase]]
		+	*[[Spore coat protein\|Spore coat protein]]

	==Reference==		==Reference==

OCA: Protected "1w6w" [edit=sysop:move=sysop]

OCA — Fri, 27 Jul 2012 11:58:47 GMT

Protected "1w6w" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:58, 27 July 2012