1w8x - Revision history

OCA at 18:06, 18 October 2023

OCA — Wed, 18 Oct 2023 18:06:21 GMT

←Older revision		Revision as of 18:06, 18 October 2023
Line 3:		Line 3:
	<SX load='1w8x' size='340' side='right' viewer='molstar' caption='[[1w8x]], [[Resolution\|resolution]] 4.20Å' scene=''>		<SX load='1w8x' size='340' side='right' viewer='molstar' caption='[[1w8x]], [[Resolution\|resolution]] 4.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1w8x]] is a 15 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Enterobacteria_phage_prd1~~ Enterobacteria phage ~~prd1~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W8X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1W8X FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1w8x]] is a 15 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterobacteria_phage_PRD1 Enterobacteria phage PRD1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W8X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1W8X FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~<div style='overflow: auto; max~~-~~height: 3em;'>[[1cjd\|1cjd]]~~, [[~~1gw7~~\|~~1gw7~~]]~~, [[1gw8\|1gw8]], [[1hb5\|1hb5]], [[1hb7\|1hb7]], [[1hb9\|1hb9]], [[1hqn\|1hqn]], [[1hx6\|1hx6]]</div>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 4.2Å</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1w8x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w8x OCA], [https://pdbe.org/1w8x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1w8x RCSB], [https://www.ebi.ac.uk/pdbsum/1w8x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1w8x ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1w8x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w8x OCA], [https://pdbe.org/1w8x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1w8x RCSB], [https://www.ebi.ac.uk/pdbsum/1w8x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1w8x ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/VP16_BPPRD VP16_BPPRD]] protein of the infection vertex complex, which increases the vertex stability. Anchors the vertex structure to the viral membrane. Essential for viral infectivity.<ref>PMID:15331712</ref> [[https://www.uniprot.org/uniprot/CAPSD_BPPRD CAPSD_BPPRD]] Major capsid protein self-assembles to form an icosahedral capsid with a pseudo T=25 symmetry, about 66 nm in diameter, and consisting of 240 capsid proteins trimers. The capsid encapsulates an inner membrane and the genomic dsDNA genome. The major coat protein P3 and two assembly factors (P10 and P17) are needed during the assembly of the virus particle inside the host cell, when the capsid protein multimers are capable of enclosing the host-derived membrane, containing the virus-encoded membrane-associated proteins. [[https://www.uniprot.org/uniprot/VP31_BPPRD VP31_BPPRD]] In association with P2 and trimeric P5, forms the spike complexes located at the 5-fold vertices of the capsid. Essential for viral infectivity. [[https://www.uniprot.org/uniprot/VP30_BPPRD VP30_BPPRD]] Minor capsid protein essential for stable capsid assembly of complete particles.<ref>PMID:11697904</ref>	+	[https://www.uniprot.org/uniprot/CAPSD_BPPRD CAPSD_BPPRD] Major capsid protein self-assembles to form an icosahedral capsid with a pseudo T=25 symmetry, about 66 nm in diameter, and consisting of 240 capsid proteins trimers. The capsid encapsulates an inner membrane and the genomic dsDNA genome. The major coat protein P3 and two assembly factors (P10 and P17) are needed during the assembly of the virus particle inside the host cell, when the capsid protein multimers are capable of enclosing the host-derived membrane, containing the virus-encoded membrane-associated proteins.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 22:		Line 22:
	__TOC__		__TOC__
	</SX>		</SX>
-	[[Category: Enterobacteria phage ~~prd1~~]]	+	[[Category: Enterobacteria phage PRD1]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Abrescia~~, N G.A~~]]	+	[[Category: Abrescia NGA]]
-	[[Category: Bamford~~, D H~~]]	+	[[Category: Bamford DH]]
-	[[Category: Bamford~~, J K.H~~]]	+	[[Category: Bamford JKH]]
-	[[Category: Burnett~~, R M~~]]	+	[[Category: Burnett RM]]
-	[[Category: Butcher~~, S J~~]]	+	[[Category: Butcher SJ]]
-	[[Category: Cockburn~~, J J.B~~]]	+	[[Category: Cockburn JJB]]
-	[[Category: Diprose~~, J M~~]]	+	[[Category: Diprose JM]]
-	[[Category: Fuller~~, S D~~]]	+	[[Category: Fuller SD]]
-	[[Category: Grimes~~, J M~~]]	+	[[Category: Grimes JM]]
-	[[Category: Martin, C ~~San~~]]	+	[[Category: San Martin C]]
-	[[Category: Stuart~~, D I~~]]	+	[[Category: Stuart DI]]
-	[[Category: Sutton~~, G C]]~~	+	[[Category: Sutton GC]]
-	~~[[Category: Icosahedral virus]]~~	+
-	~~[[Category: P16 membrane protein]]~~	+
-	~~[[Category: P3 major capsid protein]]~~	+
-	~~[[Category: P30 tape measure]]~~	+
-	~~[[Category: P31 penton protein]]~~	+
-	~~[[Category: Virus]]~~	+
-	~~[[Category: Virus/viral protein~~]]	+

OCA at 10:19, 12 January 2022

OCA — Wed, 12 Jan 2022 10:19:17 GMT

←Older revision		Revision as of 10:19, 12 January 2022
Line 3:		Line 3:
	<SX load='1w8x' size='340' side='right' viewer='molstar' caption='[[1w8x]], [[Resolution\|resolution]] 4.20Å' scene=''>		<SX load='1w8x' size='340' side='right' viewer='molstar' caption='[[1w8x]], [[Resolution\|resolution]] 4.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1w8x]] is a 15 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Enterobacteria_phage_prd1 Enterobacteria phage prd1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W8X OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1W8X FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1w8x]] is a 15 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterobacteria_phage_prd1 Enterobacteria phage prd1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W8X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1W8X FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1cjd\|1cjd]], [[1gw7\|1gw7]], [[1gw8\|1gw8]], [[1hb5\|1hb5]], [[1hb7\|1hb7]], [[1hb9\|1hb9]], [[1hqn\|1hqn]], [[1hx6\|1hx6]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1cjd\|1cjd]], [[1gw7\|1gw7]], [[1gw8\|1gw8]], [[1hb5\|1hb5]], [[1hb7\|1hb7]], [[1hb9\|1hb9]], [[1hqn\|1hqn]], [[1hx6\|1hx6]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1w8x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w8x OCA], [~~http~~://pdbe.org/1w8x PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1w8x RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1w8x PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1w8x ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1w8x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w8x OCA], [https://pdbe.org/1w8x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1w8x RCSB], [https://www.ebi.ac.uk/pdbsum/1w8x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1w8x ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/VP16_BPPRD VP16_BPPRD]] protein of the infection vertex complex, which increases the vertex stability. Anchors the vertex structure to the viral membrane. Essential for viral infectivity.<ref>PMID:15331712</ref> [[~~http~~://www.uniprot.org/uniprot/CAPSD_BPPRD CAPSD_BPPRD]] Major capsid protein self-assembles to form an icosahedral capsid with a pseudo T=25 symmetry, about 66 nm in diameter, and consisting of 240 capsid proteins trimers. The capsid encapsulates an inner membrane and the genomic dsDNA genome. The major coat protein P3 and two assembly factors (P10 and P17) are needed during the assembly of the virus particle inside the host cell, when the capsid protein multimers are capable of enclosing the host-derived membrane, containing the virus-encoded membrane-associated proteins. [[~~http~~://www.uniprot.org/uniprot/VP31_BPPRD VP31_BPPRD]] In association with P2 and trimeric P5, forms the spike complexes located at the 5-fold vertices of the capsid. Essential for viral infectivity. [[~~http~~://www.uniprot.org/uniprot/VP30_BPPRD VP30_BPPRD]] Minor capsid protein essential for stable capsid assembly of complete particles.<ref>PMID:11697904</ref>	+	[[https://www.uniprot.org/uniprot/VP16_BPPRD VP16_BPPRD]] protein of the infection vertex complex, which increases the vertex stability. Anchors the vertex structure to the viral membrane. Essential for viral infectivity.<ref>PMID:15331712</ref> [[https://www.uniprot.org/uniprot/CAPSD_BPPRD CAPSD_BPPRD]] Major capsid protein self-assembles to form an icosahedral capsid with a pseudo T=25 symmetry, about 66 nm in diameter, and consisting of 240 capsid proteins trimers. The capsid encapsulates an inner membrane and the genomic dsDNA genome. The major coat protein P3 and two assembly factors (P10 and P17) are needed during the assembly of the virus particle inside the host cell, when the capsid protein multimers are capable of enclosing the host-derived membrane, containing the virus-encoded membrane-associated proteins. [[https://www.uniprot.org/uniprot/VP31_BPPRD VP31_BPPRD]] In association with P2 and trimeric P5, forms the spike complexes located at the 5-fold vertices of the capsid. Essential for viral infectivity. [[https://www.uniprot.org/uniprot/VP30_BPPRD VP30_BPPRD]] Minor capsid protein essential for stable capsid assembly of complete particles.<ref>PMID:11697904</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 16:42, 10 April 2020

OCA — Fri, 10 Apr 2020 16:42:19 GMT

←Older revision		Revision as of 16:42, 10 April 2020
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	<SX load='1w8x' size='340' side='right' viewer='molstar' caption='[[1w8x]], [[Resolution\|resolution]] 4.20Å' scene=''>		<SX load='1w8x' size='340' side='right' viewer='molstar' caption='[[1w8x]], [[Resolution\|resolution]] 4.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1w8x]] is a 15 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_prd1 Enterobacteria phage prd1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W8X OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1W8X FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1w8x]] is a 15 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_prd1 Enterobacteria phage prd1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W8X OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1W8X FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1cjd\|1cjd]], [[1gw7\|1gw7]], [[1gw8\|1gw8]], [[1hb5\|1hb5]], [[1hb7\|1hb7]], [[1hb9\|1hb9]], [[1hqn\|1hqn]], [[1hx6\|1hx6]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1cjd\|1cjd]], [[1gw7\|1gw7]], [[1gw8\|1gw8]], [[1hb5\|1hb5]], [[1hb7\|1hb7]], [[1hb9\|1hb9]], [[1hqn\|1hqn]], [[1hx6\|1hx6]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1w8x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w8x OCA], [http://pdbe.org/1w8x PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1w8x RCSB], [http://www.ebi.ac.uk/pdbsum/1w8x PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1w8x ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1w8x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w8x OCA], [http://pdbe.org/1w8x PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1w8x RCSB], [http://www.ebi.ac.uk/pdbsum/1w8x PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1w8x ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 03:56, 5 March 2020

OCA — Thu, 05 Mar 2020 03:56:32 GMT

←Older revision		Revision as of 03:56, 5 March 2020
Line 1:		Line 1:

	==Structural analysis of PRD1==		==Structural analysis of PRD1==
-	<~~StructureSection~~ load='1w8x' size='340' side='right' caption='[[1w8x]], [[Resolution\|resolution]] 4.20Å' scene=''>	+	<SX load='1w8x' size='340' side='right' viewer='molstar' caption='[[1w8x]], [[Resolution\|resolution]] 4.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1w8x]] is a 15 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_prd1 Enterobacteria phage prd1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W8X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1W8X FirstGlance]. <br>		<table><tr><td colspan='2'>[[1w8x]] is a 15 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_prd1 Enterobacteria phage prd1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W8X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1W8X FirstGlance]. <br>
Line 21:		Line 21:
	<references/>		<references/>
	__TOC__		__TOC__
-	</~~StructureSection~~>	+	</SX>
	[[Category: Enterobacteria phage prd1]]		[[Category: Enterobacteria phage prd1]]
		+	[[Category: Large Structures]]
	[[Category: Abrescia, N G.A]]		[[Category: Abrescia, N G.A]]
	[[Category: Bamford, D H]]		[[Category: Bamford, D H]]

OCA at 08:05, 24 October 2018

OCA — Wed, 24 Oct 2018 08:05:51 GMT

←Older revision		Revision as of 08:05, 24 October 2018
Line 3:		Line 3:
	<StructureSection load='1w8x' size='340' side='right' caption='[[1w8x]], [[Resolution\|resolution]] 4.20Å' scene=''>		<StructureSection load='1w8x' size='340' side='right' caption='[[1w8x]], [[Resolution\|resolution]] 4.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1w8x]] is a 15 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bpprd Bpprd~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W8X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1W8X FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1w8x]] is a 15 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_prd1 Enterobacteria phage prd1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W8X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1W8X FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1cjd\|1cjd]], [[1gw7\|1gw7]], [[1gw8\|1gw8]], [[1hb5\|1hb5]], [[1hb7\|1hb7]], [[1hb9\|1hb9]], [[1hqn\|1hqn]], [[1hx6\|1hx6]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1cjd\|1cjd]], [[1gw7\|1gw7]], [[1gw8\|1gw8]], [[1hb5\|1hb5]], [[1hb7\|1hb7]], [[1hb9\|1hb9]], [[1hqn\|1hqn]], [[1hx6\|1hx6]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1w8x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w8x OCA], [http://pdbe.org/1w8x PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1w8x RCSB], [http://www.ebi.ac.uk/pdbsum/1w8x PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1w8x ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1w8x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w8x OCA], [http://pdbe.org/1w8x PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1w8x RCSB], [http://www.ebi.ac.uk/pdbsum/1w8x PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1w8x ProSAT]</span></td></tr>
Line 22:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bpprd~~]]	+	[[Category: Enterobacteria phage prd1]]
	[[Category: Abrescia, N G.A]]		[[Category: Abrescia, N G.A]]
	[[Category: Bamford, D H]]		[[Category: Bamford, D H]]

OCA at 17:26, 18 January 2017

OCA — Wed, 18 Jan 2017 17:26:40 GMT

←Older revision		Revision as of 17:26, 18 January 2017
Line 1:		Line 1:
		+
	==Structural analysis of PRD1==		==Structural analysis of PRD1==
	<StructureSection load='1w8x' size='340' side='right' caption='[[1w8x]], [[Resolution\|resolution]] 4.20Å' scene=''>		<StructureSection load='1w8x' size='340' side='right' caption='[[1w8x]], [[Resolution\|resolution]] 4.20Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[1w8x]] is a 15 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpprd Bpprd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W8X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1W8X FirstGlance]. <br>		<table><tr><td colspan='2'>[[1w8x]] is a 15 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpprd Bpprd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W8X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1W8X FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1cjd\|1cjd]], [[1gw7\|1gw7]], [[1gw8\|1gw8]], [[1hb5\|1hb5]], [[1hb7\|1hb7]], [[1hb9\|1hb9]], [[1hqn\|1hqn]], [[1hx6\|1hx6]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1cjd\|1cjd]], [[1gw7\|1gw7]], [[1gw8\|1gw8]], [[1hb5\|1hb5]], [[1hb7\|1hb7]], [[1hb9\|1hb9]], [[1hqn\|1hqn]], [[1hx6\|1hx6]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1w8x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w8x OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1w8x RCSB], [http://www.ebi.ac.uk/pdbsum/1w8x PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1w8x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w8x OCA], [http://pdbe.org/1w8x PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1w8x RCSB], [http://www.ebi.ac.uk/pdbsum/1w8x PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1w8x ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 16:		Line 17:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1w8x" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 06:47, 15 April 2015

OCA — Wed, 15 Apr 2015 06:47:10 GMT

←Older revision		Revision as of 06:47, 15 April 2015
Line 1:		Line 1:
-	==~~STRUCTURAL ANALYSIS OF~~ PRD1==	+	==Structural analysis of PRD1==
	<StructureSection load='1w8x' size='340' side='right' caption='[[1w8x]], [[Resolution\|resolution]] 4.20Å' scene=''>		<StructureSection load='1w8x' size='340' side='right' caption='[[1w8x]], [[Resolution\|resolution]] 4.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1w8x]] is a 15 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Enterobacteria_phage_prd1 Enterobacteria phage prd1~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W8X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1W8X FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1w8x]] is a 15 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpprd Bpprd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W8X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1W8X FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1cjd\|1cjd]], [[1gw7\|1gw7]], [[1gw8\|1gw8]], [[1hb5\|1hb5]], [[1hb7\|1hb7]], [[1hb9\|1hb9]], [[1hqn\|1hqn]], [[1hx6\|1hx6]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1cjd\|1cjd]], [[1gw7\|1gw7]], [[1gw8\|1gw8]], [[1hb5\|1hb5]], [[1hb7\|1hb7]], [[1hb9\|1hb9]], [[1hqn\|1hqn]], [[1hx6\|1hx6]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1w8x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w8x OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1w8x RCSB], [http://www.ebi.ac.uk/pdbsum/1w8x PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1w8x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w8x OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1w8x RCSB], [http://www.ebi.ac.uk/pdbsum/1w8x PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[http://www.uniprot.org/uniprot/~~COA3_BPPRD COA3_BPPRD~~]] Major capsid protein self-assembles to form an icosahedral capsid with a pseudo T=25 symmetry, about 66 nm in diameter, and consisting of 240 capsid proteins trimers. The capsid encapsulates an inner membrane and the genomic dsDNA genome. The major coat protein P3 and two assembly factors (P10 and P17) are needed during the assembly of the virus particle inside the host cell, when the capsid protein multimers are capable of enclosing the host-derived membrane, containing the virus-encoded membrane-associated proteins.	+	[[http://www.uniprot.org/uniprot/VP16_BPPRD VP16_BPPRD]] protein of the infection vertex complex, which increases the vertex stability. Anchors the vertex structure to the viral membrane. Essential for viral infectivity.<ref>PMID:15331712</ref> [[http://www.uniprot.org/uniprot/CAPSD_BPPRD CAPSD_BPPRD]] Major capsid protein self-assembles to form an icosahedral capsid with a pseudo T=25 symmetry, about 66 nm in diameter, and consisting of 240 capsid proteins trimers. The capsid encapsulates an inner membrane and the genomic dsDNA genome. The major coat protein P3 and two assembly factors (P10 and P17) are needed during the assembly of the virus particle inside the host cell, when the capsid protein multimers are capable of enclosing the host-derived membrane, containing the virus-encoded membrane-associated proteins. [[http://www.uniprot.org/uniprot/VP31_BPPRD VP31_BPPRD]] In association with P2 and trimeric P5, forms the spike complexes located at the 5-fold vertices of the capsid. Essential for viral infectivity. [[http://www.uniprot.org/uniprot/VP30_BPPRD VP30_BPPRD]] Minor capsid protein essential for stable capsid assembly of complete particles.<ref>PMID:11697904</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Enterobacteria phage prd1~~]]	+	[[Category: Bpprd]]
	[[Category: Abrescia, N G.A]]		[[Category: Abrescia, N G.A]]
	[[Category: Bamford, D H]]		[[Category: Bamford, D H]]

OCA at 16:20, 24 December 2014

OCA — Wed, 24 Dec 2014 16:20:04 GMT

←Older revision		Revision as of 16:20, 24 December 2014
Line 6:		Line 6:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1w8x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w8x OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1w8x RCSB], [http://www.ebi.ac.uk/pdbsum/1w8x PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1w8x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w8x OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1w8x RCSB], [http://www.ebi.ac.uk/pdbsum/1w8x PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/COA3_BPPRD COA3_BPPRD]] Major capsid protein self-assembles to form an icosahedral capsid with a pseudo T=25 symmetry, about 66 nm in diameter, and consisting of 240 capsid proteins trimers. The capsid encapsulates an inner membrane and the genomic dsDNA genome. The major coat protein P3 and two assembly factors (P10 and P17) are needed during the assembly of the virus particle inside the host cell, when the capsid protein multimers are capable of enclosing the host-derived membrane, containing the virus-encoded membrane-associated proteins.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 19:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Enterobacteria phage prd1]]		[[Category: Enterobacteria phage prd1]]
-	[[Category: Abrescia, N G.A.]]	+	[[Category: Abrescia, N G.A]]
-	[[Category: Bamford, D H.]]	+	[[Category: Bamford, D H]]
-	[[Category: Bamford, J K.H.]]	+	[[Category: Bamford, J K.H]]
-	[[Category: Burnett, R M.]]	+	[[Category: Burnett, R M]]
-	[[Category: Butcher, S J.]]	+	[[Category: Butcher, S J]]
-	[[Category: Cockburn, J J.B.]]	+	[[Category: Cockburn, J J.B]]
-	[[Category: Diprose, J M.]]	+	[[Category: Diprose, J M]]
-	[[Category: Fuller, S D.]]	+	[[Category: Fuller, S D]]
-	[[Category: Grimes, J M.]]	+	[[Category: Grimes, J M]]
-	[[Category: Martin, C San.]]	+	[[Category: Martin, C San]]
-	[[Category: Stuart, D I.]]	+	[[Category: Stuart, D I]]
-	[[Category: Sutton, G C.]]	+	[[Category: Sutton, G C]]
	[[Category: Icosahedral virus]]		[[Category: Icosahedral virus]]
	[[Category: P16 membrane protein]]		[[Category: P16 membrane protein]]

OCA at 08:26, 8 October 2014

OCA — Wed, 08 Oct 2014 08:26:22 GMT

←Older revision		Revision as of 08:26, 8 October 2014
Line 1:		Line 1:
-	[[~~Image:~~1w8x.~~png~~\|~~left~~\|~~200px~~]]	+	==STRUCTURAL ANALYSIS OF PRD1==
		+	<StructureSection load='1w8x' size='340' side='right' caption='[[1w8x]], [[Resolution\|resolution]] 4.20Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1w8x]] is a 15 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_prd1 Enterobacteria phage prd1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1W8X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1W8X FirstGlance]. <br>
		+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1cjd\|1cjd]], [[1gw7\|1gw7]], [[1gw8\|1gw8]], [[1hb5\|1hb5]], [[1hb7\|1hb7]], [[1hb9\|1hb9]], [[1hqn\|1hqn]], [[1hx6\|1hx6]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1w8x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1w8x OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1w8x RCSB], [http://www.ebi.ac.uk/pdbsum/1w8x PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The structure of the membrane-containing bacteriophage PRD1 has been determined by X-ray crystallography at about 4 A resolution. Here we describe the structure and location of proteins P3, P16, P30 and P31. Different structural proteins seem to have specialist roles in controlling virus assembly. The linearly extended P30 appears to nucleate the formation of the icosahedral facets (composed of trimers of the major capsid protein, P3) and acts as a molecular tape-measure, defining the size of the virus and cementing the facets together. Pentamers of P31 form the vertex base, interlocking with subunits of P3 and interacting with the membrane protein P16. The architectural similarities with adenovirus and one of the largest known virus particles PBCV-1 support the notion that the mechanism of assembly of PRD1 is scaleable and applies across the major viral lineage formed by these viruses.

-	~~{{STRUCTURE_1w8x\| PDB=1w8x \| SCENE= }}~~	+	Insights into assembly from structural analysis of bacteriophage PRD1.,Abrescia NG, Cockburn JJ, Grimes JM, Sutton GC, Diprose JM, Butcher SJ, Fuller SD, San Martin C, Burnett RM, Stuart DI, Bamford DH, Bamford JK Nature. 2004 Nov 4;432(7013):68-74. PMID:15525981<ref>PMID:15525981</ref>

-	~~===STRUCTURAL ANALYSIS OF PRD1===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_15525981}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1w8x]] is~~ a ~~15 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Enterobacteria_phage_prd1 Enterobacteria phage prd1]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1W8X OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:015525981<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Enterobacteria phage prd1]]		[[Category: Enterobacteria phage prd1]]
	[[Category: Abrescia, N G.A.]]		[[Category: Abrescia, N G.A.]]

OCA: Protected "1w8x" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 12:56:58 GMT

Protected "1w8x" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:56, 5 January 2013