1wad - Revision history

OCA at 13:33, 9 May 2024

OCA — Thu, 09 May 2024 13:33:15 GMT

←Older revision		Revision as of 13:33, 9 May 2024
Line 3:		Line 3:
	<StructureSection load='1wad' size='340' side='right'caption='[[1wad]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1wad' size='340' side='right'caption='[[1wad]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1wad]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Desulfovibrio_gigas Desulfovibrio~~ gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WAD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WAD FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1wad]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Megalodesulfovibrio_gigas Megalodesulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WAD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WAD FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wad FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wad OCA], [https://pdbe.org/1wad PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wad RCSB], [https://www.ebi.ac.uk/pdbsum/1wad PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wad ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wad FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wad OCA], [https://pdbe.org/1wad PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wad RCSB], [https://www.ebi.ac.uk/pdbsum/1wad PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wad ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/~~CYC3_DESGI CYC3_DESGI]~~] Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin.	+	[https://www.uniprot.org/uniprot/CYC3_MEGG1 CYC3_MEGG1] Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 35:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Desulfovibrio gigas]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Carrondo~~, M A~~]]	+	[[Category: Megalodesulfovibrio gigas]]
-	[[Category: Coelho, R]]	+	[[Category: Carrondo MA]]
-	[[Category: Dauter, Z]]	+	[[Category: Coelho R]]
-	[[Category: Matias~~, P M~~]]	+	[[Category: Dauter Z]]
-	[[Category: Morais, J]]	+	[[Category: Matias PM]]
-	[[Category: Sieker, L]]	+	[[Category: Morais J]]
-	[[Category: Wilson, K]]	+	[[Category: Sieker L]]
-	~~[[Category: Calcium binding]]~~	+	[[Category: Wilson K]]
-	~~[[Category: Electron transport~~]]	+

OCA at 16:16, 27 October 2021

OCA — Wed, 27 Oct 2021 16:16:21 GMT

←Older revision		Revision as of 16:16, 27 October 2021
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	<StructureSection load='1wad' size='340' side='right'caption='[[1wad]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1wad' size='340' side='right'caption='[[1wad]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1wad]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WAD OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1WAD FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1wad]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WAD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WAD FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1wad FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wad OCA], [~~http~~://pdbe.org/1wad PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1wad RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1wad PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1wad ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wad FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wad OCA], [https://pdbe.org/1wad PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wad RCSB], [https://www.ebi.ac.uk/pdbsum/1wad PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wad ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/CYC3_DESGI CYC3_DESGI]] Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin.	+	[[https://www.uniprot.org/uniprot/CYC3_DESGI CYC3_DESGI]] Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 31:
	==See Also==		==See Also==
	*[[Cytochrome C 3D structures\|Cytochrome C 3D structures]]		*[[Cytochrome C 3D structures\|Cytochrome C 3D structures]]
-	*[[User:Eric Martz/Entertaining PDB codes\|User:Eric Martz/Entertaining PDB codes]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 17:18, 22 January 2020

OCA — Wed, 22 Jan 2020 17:18:10 GMT

←Older revision		Revision as of 17:18, 22 January 2020
Line 1:		Line 1:

	==CYTOCHROME C3 WITH 4 HEME GROUPS AND ONE CALCIUM ION==		==CYTOCHROME C3 WITH 4 HEME GROUPS AND ONE CALCIUM ION==
-	<StructureSection load='1wad' size='340' side='right' caption='[[1wad]], [[Resolution\|resolution]] 1.80Å' scene=''>	+	<StructureSection load='1wad' size='340' side='right'caption='[[1wad]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1wad]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WAD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WAD FirstGlance]. <br>		<table><tr><td colspan='2'>[[1wad]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WAD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WAD FirstGlance]. <br>
Line 30:		Line 30:

	==See Also==		==See Also==
-	*[[Cytochrome c\|Cytochrome c]]	+	*[[Cytochrome C 3D structures\|Cytochrome C 3D structures]]
	*[[User:Eric Martz/Entertaining PDB codes\|User:Eric Martz/Entertaining PDB codes]]		*[[User:Eric Martz/Entertaining PDB codes\|User:Eric Martz/Entertaining PDB codes]]
	== References ==		== References ==
Line 37:		Line 37:
	</StructureSection>		</StructureSection>
	[[Category: Desulfovibrio gigas]]		[[Category: Desulfovibrio gigas]]
		+	[[Category: Large Structures]]
	[[Category: Carrondo, M A]]		[[Category: Carrondo, M A]]
	[[Category: Coelho, R]]		[[Category: Coelho, R]]

OCA at 16:03, 11 April 2018

OCA — Wed, 11 Apr 2018 16:03:59 GMT

←Older revision		Revision as of 16:03, 11 April 2018
Line 1:		Line 1:
		+
	==CYTOCHROME C3 WITH 4 HEME GROUPS AND ONE CALCIUM ION==		==CYTOCHROME C3 WITH 4 HEME GROUPS AND ONE CALCIUM ION==
	<StructureSection load='1wad' size='340' side='right' caption='[[1wad]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1wad' size='340' side='right' caption='[[1wad]], [[Resolution\|resolution]] 1.80Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[1wad]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WAD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WAD FirstGlance]. <br>		<table><tr><td colspan='2'>[[1wad]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WAD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WAD FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wad FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wad OCA], [http://pdbe.org/1wad PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1wad RCSB], [http://www.ebi.ac.uk/pdbsum/1wad PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wad FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wad OCA], [http://pdbe.org/1wad PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1wad RCSB], [http://www.ebi.ac.uk/pdbsum/1wad PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1wad ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wa/1wad_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wa/1wad_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wad ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 30:		Line 31:
	==See Also==		==See Also==
	*[[Cytochrome c\|Cytochrome c]]		*[[Cytochrome c\|Cytochrome c]]
		+	*[[User:Eric Martz/Entertaining PDB codes\|User:Eric Martz/Entertaining PDB codes]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 11:57, 11 September 2015

OCA — Fri, 11 Sep 2015 11:57:00 GMT

←Older revision		Revision as of 11:57, 11 September 2015
Line 4:		Line 4:
	<table><tr><td colspan='2'>[[1wad]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WAD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WAD FirstGlance]. <br>		<table><tr><td colspan='2'>[[1wad]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WAD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WAD FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wad FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wad OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1wad RCSB], [http://www.ebi.ac.uk/pdbsum/1wad PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wad FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wad OCA], [http://pdbe.org/1wad PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1wad RCSB], [http://www.ebi.ac.uk/pdbsum/1wad PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1wad" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==

OCA at 16:07, 25 December 2014

OCA — Thu, 25 Dec 2014 16:07:56 GMT

←Older revision		Revision as of 16:07, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1wad]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WAD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WAD FirstGlance]. <br>		<table><tr><td colspan='2'>[[1wad]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WAD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WAD FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wad FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wad OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1wad RCSB], [http://www.ebi.ac.uk/pdbsum/1wad PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wad FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wad OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1wad RCSB], [http://www.ebi.ac.uk/pdbsum/1wad PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/CYC3_DESGI CYC3_DESGI]] Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 34:
	</StructureSection>		</StructureSection>
	[[Category: Desulfovibrio gigas]]		[[Category: Desulfovibrio gigas]]
-	[[Category: Carrondo, M A.]]	+	[[Category: Carrondo, M A]]
-	[[Category: Coelho, R.]]	+	[[Category: Coelho, R]]
-	[[Category: Dauter, Z.]]	+	[[Category: Dauter, Z]]
-	[[Category: Matias, P M.]]	+	[[Category: Matias, P M]]
-	[[Category: Morais, J.]]	+	[[Category: Morais, J]]
-	[[Category: Sieker, L.]]	+	[[Category: Sieker, L]]
-	[[Category: Wilson, K.]]	+	[[Category: Wilson, K]]
	[[Category: Calcium binding]]		[[Category: Calcium binding]]
	[[Category: Electron transport]]		[[Category: Electron transport]]

OCA at 20:51, 28 September 2014

OCA — Sun, 28 Sep 2014 20:51:11 GMT

←Older revision		Revision as of 20:51, 28 September 2014
Line 1:		Line 1:
-	[[~~Image~~:1wad.~~png\|left~~\|200px]]	+	==CYTOCHROME C3 WITH 4 HEME GROUPS AND ONE CALCIUM ION==
		+	<StructureSection load='1wad' size='340' side='right' caption='[[1wad]], [[Resolution\|resolution]] 1.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1wad]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WAD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WAD FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene><br>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wad FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wad OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1wad RCSB], [http://www.ebi.ac.uk/pdbsum/1wad PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wa/1wad_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Crystals of the tetraheme cytochrome c3 from sulfate-reducing bacteria Desulfovibrio gigas (Dg) (MW 13 kDa, 111 residues, four heme groups) were obtained and X-ray diffraction data collected to 1.8 A resolution. The structure was solved by the method of molecular replacement and the resulting model refined to a conventional R-factor of 14.9%. The three-dimensional structure shows many similarities to other known crystal structures of tetraheme c3 cytochromes, but it also shows some remarkable differences. In particular, the location of the aromatic residues around the heme groups, which may play a fundamental role in the electron transfer processes of the molecule, are well conserved in the cases of hemes I, III, and IV. However, heme II has an aromatic environment that is completely different to that found in other related cytochromes c3. Another unusual feature is the presence of a Ca2+ ion coordinated by oxygen atoms supplied by the protein within a loop near the N-terminus. It is speculated that this loop may be stabilized by the presence of this Ca2+ ion, may contribute to heme-redox perturbation, and might even be involved in the specificity of recognition with its redox partner.

-	~~{{STRUCTURE_1wad\| PDB=1wad \| SCENE= }}~~	+	Cytochrome c3 from Desulfovibrio gigas: crystal structure at 1.8 A resolution and evidence for a specific calcium-binding site.,Matias PM, Morais J, Coelho R, Carrondo MA, Wilson K, Dauter Z, Sieker L Protein Sci. 1996 Jul;5(7):1342-54. PMID:8819167<ref>PMID:8819167</ref>

-	~~===CYTOCHROME C3 WITH 4 HEME GROUPS AND ONE CALCIUM ION===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_8819167}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1wad]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1WAD OCA].~~	+

	==See Also==		==See Also==
	*[[Cytochrome c\|Cytochrome c]]		*[[Cytochrome c\|Cytochrome c]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:008819167<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Desulfovibrio gigas]]		[[Category: Desulfovibrio gigas]]
	[[Category: Carrondo, M A.]]		[[Category: Carrondo, M A.]]

OCA at 18:43, 20 October 2012

OCA — Sat, 20 Oct 2012 18:43:13 GMT

←Older revision		Revision as of 18:43, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[1wad]] is a 1 chain structure ~~of [[Cytochrome c]]~~ with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WAD OCA].	+	[[1wad]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WAD OCA].

	==See Also==		==See Also==

OCA: Protected "1wad" [edit=sysop:move=sysop]

OCA — Fri, 27 Jul 2012 05:00:20 GMT

Protected "1wad" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:00, 27 July 2012

OCA at 05:00, 27 July 2012

OCA — Fri, 27 Jul 2012 05:00:19 GMT

←Older revision		Revision as of 05:00, 27 July 2012
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-	{{Seed}}
	[[Image:1wad.png\|left\|200px]]		[[Image:1wad.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1wad", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1wad\| PDB=1wad \| SCENE= }}		{{STRUCTURE_1wad\| PDB=1wad \| SCENE= }}

	===CYTOCHROME C3 WITH 4 HEME GROUPS AND ONE CALCIUM ION===		===CYTOCHROME C3 WITH 4 HEME GROUPS AND ONE CALCIUM ION===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_8819167}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 8819167 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_8819167}}		{{ABSTRACT_PUBMED_8819167}}

	==About this Structure==		==About this Structure==
-	~~1WAD~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WAD OCA].	+	[[1wad]] is a 1 chain structure of [[Cytochrome c]] with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_gigas Desulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WAD OCA].
		+
		+	==See Also==
		+	*[[Cytochrome c\|Cytochrome c]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~8819167~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:008819167</ref><references group="xtra"/>
	[[Category: Desulfovibrio gigas]]		[[Category: Desulfovibrio gigas]]
	[[Category: Carrondo, M A.]]		[[Category: Carrondo, M A.]]
Line 34:		Line 25:
	[[Category: Calcium binding]]		[[Category: Calcium binding]]
	[[Category: Electron transport]]		[[Category: Electron transport]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 21:19:59 2009''