1wfx - Revision history

OCA at 13:37, 9 May 2024

OCA — Thu, 09 May 2024 13:37:11 GMT

←Older revision		Revision as of 13:37, 9 May 2024
Line 3:		Line 3:
	<StructureSection load='1wfx' size='340' side='right'caption='[[1wfx]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='1wfx' size='340' side='right'caption='[[1wfx]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1wfx]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Aerpx Aerpx~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WFX OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1WFX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1wfx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aeropyrum_pernix Aeropyrum pernix]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WFX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WFX FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>~~, ~~<scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.8Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene><~~/td~~></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<~~tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">APE0204 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=56636 AERPX])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wfx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wfx OCA], [https://pdbe.org/1wfx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wfx RCSB], [https://www.ebi.ac.uk/pdbsum/1wfx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wfx ProSAT], [https://www.topsan.org/Proteins/RSGI/1wfx TOPSAN]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1wfx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wfx OCA], [~~http~~://pdbe.org/1wfx PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1wfx RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1wfx PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1wfx ProSAT], [~~http~~://www.topsan.org/Proteins/RSGI/1wfx TOPSAN]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/KPTA_AERPE KPTA_AERPE]] Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''-cyclic phosphate (APPR>P). May function as an ADP-ribosylase (By similarity).	+	[https://www.uniprot.org/uniprot/KPTA_AERPE KPTA_AERPE] Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''-cyclic phosphate (APPR>P). May function as an ADP-ribosylase (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Aerpx~~]]	+	[[Category: Aeropyrum pernix]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Bessho, Y]]	+	[[Category: Bessho Y]]
-	[[Category: Kato-Murayama, M]]	+	[[Category: Kato-Murayama M]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Shirouzu M]]
-	[[Category: Shirouzu, M]]	+	[[Category: Yokoyama S]]
-	[[Category: Yokoyama, S]]	+
-	~~[[Category: Nad]]~~	+
-	~~[[Category: Rna 2'-phosphotransferase]]~~	+
-	~~[[Category: Rsgi]]~~	+
-	~~[[Category: Transferase]]~~	+
-	~~[[Category: Trna splicing~~]]	+

OCA at 07:44, 30 December 2020

OCA — Wed, 30 Dec 2020 07:44:36 GMT

←Older revision		Revision as of 07:44, 30 December 2020
Line 1:		Line 1:

	==Crystal Structure of APE0204 from Aeropyrum pernix==		==Crystal Structure of APE0204 from Aeropyrum pernix==
-	<StructureSection load='1wfx' size='340' side='right' caption='[[1wfx]], [[Resolution\|resolution]] 2.80Å' scene=''>	+	<StructureSection load='1wfx' size='340' side='right'caption='[[1wfx]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1wfx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aerpx Aerpx]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WFX OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1WFX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1wfx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aerpx Aerpx]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WFX OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1WFX FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">APE0204 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=56636 AERPX])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">APE0204 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=56636 AERPX])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1wfx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wfx OCA], [http://pdbe.org/1wfx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1wfx RCSB], [http://www.ebi.ac.uk/pdbsum/1wfx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1wfx ProSAT], [http://www.topsan.org/Proteins/RSGI/1wfx TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1wfx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wfx OCA], [http://pdbe.org/1wfx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1wfx RCSB], [http://www.ebi.ac.uk/pdbsum/1wfx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1wfx ProSAT], [http://www.topsan.org/Proteins/RSGI/1wfx TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 35:		Line 35:
	</StructureSection>		</StructureSection>
	[[Category: Aerpx]]		[[Category: Aerpx]]
		+	[[Category: Large Structures]]
	[[Category: Bessho, Y]]		[[Category: Bessho, Y]]
	[[Category: Kato-Murayama, M]]		[[Category: Kato-Murayama, M]]

OCA at 16:09, 11 April 2018

OCA — Wed, 11 Apr 2018 16:09:26 GMT

←Older revision		Revision as of 16:09, 11 April 2018
Line 1:		Line 1:
		+
	==Crystal Structure of APE0204 from Aeropyrum pernix==		==Crystal Structure of APE0204 from Aeropyrum pernix==
	<StructureSection load='1wfx' size='340' side='right' caption='[[1wfx]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='1wfx' size='340' side='right' caption='[[1wfx]], [[Resolution\|resolution]] 2.80Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">APE0204 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=56636 AERPX])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">APE0204 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=56636 AERPX])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wfx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wfx OCA], [http://pdbe.org/1wfx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1wfx RCSB], [http://www.ebi.ac.uk/pdbsum/1wfx PDBsum], [http://www.topsan.org/Proteins/RSGI/1wfx TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wfx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wfx OCA], [http://pdbe.org/1wfx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1wfx RCSB], [http://www.ebi.ac.uk/pdbsum/1wfx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1wfx ProSAT], [http://www.topsan.org/Proteins/RSGI/1wfx TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 14:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wf/1wfx_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wf/1wfx_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wfx ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 23:46, 11 September 2015

OCA — Fri, 11 Sep 2015 23:46:04 GMT

←Older revision		Revision as of 23:46, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1wfx' size='340' side='right' caption='[[1wfx]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='1wfx' size='340' side='right' caption='[[1wfx]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1wfx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Aeropyrum_pernix Aeropyrum pernix~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WFX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WFX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1wfx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aerpx Aerpx]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WFX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WFX FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">APE0204 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=56636 ~~Aeropyrum pernix~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">APE0204 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=56636 AERPX])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wfx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wfx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1wfx RCSB], [http://www.ebi.ac.uk/pdbsum/1wfx PDBsum], [http://www.topsan.org/Proteins/RSGI/1wfx TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wfx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wfx OCA], [http://pdbe.org/1wfx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1wfx RCSB], [http://www.ebi.ac.uk/pdbsum/1wfx PDBsum], [http://www.topsan.org/Proteins/RSGI/1wfx TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 28:		Line 28:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1wfx" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Aeropyrum pernix~~]]	+	[[Category: Aerpx]]
	[[Category: Bessho, Y]]		[[Category: Bessho, Y]]
	[[Category: Kato-Murayama, M]]		[[Category: Kato-Murayama, M]]

OCA at 21:00, 25 December 2014

OCA — Thu, 25 Dec 2014 21:00:04 GMT

←Older revision		Revision as of 21:00, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1wfx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aeropyrum_pernix Aeropyrum pernix]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WFX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WFX FirstGlance]. <br>		<table><tr><td colspan='2'>[[1wfx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aeropyrum_pernix Aeropyrum pernix]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WFX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WFX FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">APE0204 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=56636 Aeropyrum pernix])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">APE0204 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=56636 Aeropyrum pernix])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wfx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wfx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1wfx RCSB], [http://www.ebi.ac.uk/pdbsum/1wfx PDBsum], [http://www.topsan.org/Proteins/RSGI/1wfx TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wfx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wfx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1wfx RCSB], [http://www.ebi.ac.uk/pdbsum/1wfx PDBsum], [http://www.topsan.org/Proteins/RSGI/1wfx TOPSAN]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/KPTA_AERPE KPTA_AERPE]] Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''-cyclic phosphate (APPR>P). May function as an ADP-ribosylase (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Aeropyrum pernix]]		[[Category: Aeropyrum pernix]]
-	[[Category: Bessho, Y.]]	+	[[Category: Bessho, Y]]
-	[[Category: Kato-Murayama, M.]]	+	[[Category: Kato-Murayama, M]]
-	[[Category: ~~RSGI, RIKEN~~ Structural ~~Genomics/Proteomics Initiative.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Shirouzu, M.]]	+	[[Category: Shirouzu, M]]
-	[[Category: Yokoyama, S.]]	+	[[Category: Yokoyama, S]]
	[[Category: Nad]]		[[Category: Nad]]
-	[[Category: Riken structural genomics/proteomics initiative]]
	[[Category: Rna 2'-phosphotransferase]]		[[Category: Rna 2'-phosphotransferase]]
	[[Category: Rsgi]]		[[Category: Rsgi]]
-	[[Category: Structural genomic]]
	[[Category: Transferase]]		[[Category: Transferase]]
	[[Category: Trna splicing]]		[[Category: Trna splicing]]

OCA at 20:24, 29 September 2014

OCA — Mon, 29 Sep 2014 20:24:05 GMT

←Older revision		Revision as of 20:24, 29 September 2014
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-	[[~~Image:~~1wfx.~~png~~\|~~left~~\|200px]]	+	==Crystal Structure of APE0204 from Aeropyrum pernix==
		+	<StructureSection load='1wfx' size='340' side='right' caption='[[1wfx]], [[Resolution\|resolution]] 2.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1wfx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aeropyrum_pernix Aeropyrum pernix]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WFX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WFX FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">APE0204 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=56636 Aeropyrum pernix])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wfx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wfx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1wfx RCSB], [http://www.ebi.ac.uk/pdbsum/1wfx PDBsum], [http://www.topsan.org/Proteins/RSGI/1wfx TOPSAN]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wf/1wfx_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	In the final step of tRNA splicing, the 2'-phosphotransferase catalyzes the transfer of the extra 2'-phosphate from the precursor-ligated tRNA to NAD. We have determined the crystal structure of the 2'-phosphotransferase protein from Aeropyrum pernix K1 at 2.8 Angstroms resolution. The structure of the 2'-phosphotransferase contains two globular domains (N and C-domains), which form a cleft in the center. The N-domain has the winged helix motif, a subfamily of the helix-turn-helix family, which is shared by many DNA-binding proteins. The C-domain of the 2'-phosphotransferase superimposes well on the NAD-binding fold of bacterial (diphtheria) toxins, which catalyze the transfer of ADP ribose from NAD to target proteins, indicating that the mode of NAD binding by the 2'-phosphotransferase could be similar to that of the bacterial toxins. The conserved basic residues are assembled at the periphery of the cleft and could participate in the enzyme contact with the sugar-phosphate backbones of tRNA. The modes by which the two functional domains recognize the two different substrates are clarified by the present crystal structure of the 2'-phosphotransferase.

-	~~{{STRUCTURE_1wfx\| PDB=1wfx \| SCENE= }}~~	+	Crystal structure of the RNA 2'-phosphotransferase from Aeropyrum pernix K1.,Kato-Murayama M, Bessho Y, Shirouzu M, Yokoyama S J Mol Biol. 2005 Apr 29;348(2):295-305. PMID:15811369<ref>PMID:15811369</ref>

-	~~===Crystal Structure~~ of ~~APE0204 from Aeropyrum pernix===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_15811369}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1wfx]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Aeropyrum_pernix Aeropyrum pernix]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1WFX OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:015811369<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Aeropyrum pernix]]		[[Category: Aeropyrum pernix]]
	[[Category: Bessho, Y.]]		[[Category: Bessho, Y.]]

OCA: Protected "1wfx" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 11:05:06 GMT

Protected "1wfx" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:05, 5 January 2013

OCA at 11:05, 5 January 2013

OCA — Sat, 05 Jan 2013 11:05:03 GMT

←Older revision		Revision as of 11:05, 5 January 2013
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-	{{Seed}}
	[[Image:1wfx.png\|left\|200px]]		[[Image:1wfx.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1wfx", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1wfx\| PDB=1wfx \| SCENE= }}		{{STRUCTURE_1wfx\| PDB=1wfx \| SCENE= }}

	===Crystal Structure of APE0204 from Aeropyrum pernix===		===Crystal Structure of APE0204 from Aeropyrum pernix===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_15811369}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 15811369 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_15811369}}		{{ABSTRACT_PUBMED_15811369}}

	==About this Structure==		==About this Structure==
-	~~1WFX~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Aeropyrum_pernix Aeropyrum pernix]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WFX OCA].	+	[[1wfx]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aeropyrum_pernix Aeropyrum pernix]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WFX OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15811369~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015811369</ref><references group="xtra"/>
	[[Category: Aeropyrum pernix]]		[[Category: Aeropyrum pernix]]
	[[Category: Bessho, Y.]]		[[Category: Bessho, Y.]]
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	[[Category: Rsgi]]		[[Category: Rsgi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
		+	[[Category: Transferase]]
	[[Category: Trna splicing]]		[[Category: Trna splicing]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 07:08:12 2009''

OCA at 05:08, 18 February 2009

OCA — Wed, 18 Feb 2009 05:08:14 GMT

←Older revision		Revision as of 05:08, 18 February 2009
Line 23:		Line 23:

	==Reference==		==Reference==
-	~~Crystal structure of the RNA 2'-phosphotransferase from Aeropyrum pernix K1., Kato-Murayama M, Bessho Y, Shirouzu M, Yokoyama S, J Mol Biol. 2005 Apr 29;348(2):295-305.~~ PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/15811369 15811369]~~	+	<ref group="xtra">PMID:15811369</ref><references group="xtra"/>
	[[Category: Aeropyrum pernix]]		[[Category: Aeropyrum pernix]]
	[[Category: Bessho, Y.]]		[[Category: Bessho, Y.]]
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	[[Category: Trna splicing]]		[[Category: Trna splicing]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sun Nov 16 15~~:00:~~38 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 07:08:12 2009''

OCA at 13:00, 16 November 2008

OCA — Sun, 16 Nov 2008 13:00:41 GMT

←Older revision		Revision as of 13:00, 16 November 2008
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	==About this Structure==		==About this Structure==
-	1WFX is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Aeropyrum_pernix Aeropyrum pernix]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WFX OCA].	+	1WFX is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Aeropyrum_pernix Aeropyrum pernix]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WFX OCA].

	==Reference==		==Reference==
	Crystal structure of the RNA 2'-phosphotransferase from Aeropyrum pernix K1., Kato-Murayama M, Bessho Y, Shirouzu M, Yokoyama S, J Mol Biol. 2005 Apr 29;348(2):295-305. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15811369 15811369]		Crystal structure of the RNA 2'-phosphotransferase from Aeropyrum pernix K1., Kato-Murayama M, Bessho Y, Shirouzu M, Yokoyama S, J Mol Biol. 2005 Apr 29;348(2):295-305. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15811369 15811369]
	[[Category: Aeropyrum pernix]]		[[Category: Aeropyrum pernix]]
-	[[Category: Single protein]]
	[[Category: Bessho, Y.]]		[[Category: Bessho, Y.]]
	[[Category: Kato-Murayama, M.]]		[[Category: Kato-Murayama, M.]]
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	[[Category: Trna splicing]]		[[Category: Trna splicing]]

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