1wiv - Revision history

OCA at 13:42, 9 May 2024

OCA — Thu, 09 May 2024 13:42:16 GMT

←Older revision		Revision as of 13:42, 9 May 2024
Line 1:		Line 1:

	==solution structure of RSGI RUH-023, a UBA domain from Arabidopsis cDNA==		==solution structure of RSGI RUH-023, a UBA domain from Arabidopsis cDNA==
-	<StructureSection load='1wiv' size='340' side='right'caption='[[1wiv~~]], [[NMR_Ensembles_of_Models \| 20 NMR models~~]]' scene=''>	+	<StructureSection load='1wiv' size='340' side='right'caption='[[1wiv]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1wiv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Arath Arath~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WIV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WIV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1wiv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WIV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WIV FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>K10D20 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~3702 ARATH])~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wiv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wiv OCA], [https://pdbe.org/1wiv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wiv RCSB], [https://www.ebi.ac.uk/pdbsum/1wiv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wiv ProSAT], [https://www.topsan.org/Proteins/RSGI/1wiv TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wiv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wiv OCA], [https://pdbe.org/1wiv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wiv RCSB], [https://www.ebi.ac.uk/pdbsum/1wiv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wiv ProSAT], [https://www.topsan.org/Proteins/RSGI/1wiv TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/UBP14_ARATH UBP14_ARATH]] Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Involved in seed and embryo development.<ref>PMID:11576424</ref> <ref>PMID:11788751</ref>	+	[https://www.uniprot.org/uniprot/UBP14_ARATH UBP14_ARATH] Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Involved in seed and embryo development.<ref>PMID:11576424</ref> <ref>PMID:11788751</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 26:		Line 26:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Arath~~]]	+	[[Category: Arabidopsis thaliana]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Abe, T]]	+	[[Category: Abe T]]
-	[[Category: Higuchi, Y]]	+	[[Category: Higuchi Y]]
-	[[Category: Hirota, H]]	+	[[Category: Hirota H]]
-	[[Category: Izumi, K]]	+	[[Category: Izumi K]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Yokoyama S]]
-	[[Category: Yokoyama, S]]	+	[[Category: Yoshida M]]
-	[[Category: Yoshida, M]]	+
-	~~[[Category: Rsgi]]~~	+
-	~~[[Category: Three helix bundle]]~~	+
-	~~[[Category: Uba domain]]~~	+
-	~~[[Category: Ubiquitin associated domain]]~~	+
-	~~[[Category: Ubiquitin specific protease 14]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 06:56, 2 March 2022

OCA — Wed, 02 Mar 2022 06:56:46 GMT

←Older revision		Revision as of 06:56, 2 March 2022
Line 3:		Line 3:
	<StructureSection load='1wiv' size='340' side='right'caption='[[1wiv]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='1wiv' size='340' side='right'caption='[[1wiv]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1wiv]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Arath Arath]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WIV OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1WIV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1wiv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arath Arath]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WIV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WIV FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">K10D20 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">K10D20 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1wiv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wiv OCA], [~~http~~://pdbe.org/1wiv PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1wiv RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1wiv PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1wiv ProSAT], [~~http~~://www.topsan.org/Proteins/RSGI/1wiv TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wiv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wiv OCA], [https://pdbe.org/1wiv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wiv RCSB], [https://www.ebi.ac.uk/pdbsum/1wiv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wiv ProSAT], [https://www.topsan.org/Proteins/RSGI/1wiv TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/UBP14_ARATH UBP14_ARATH]] Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Involved in seed and embryo development.<ref>PMID:11576424</ref> <ref>PMID:11788751</ref>	+	[[https://www.uniprot.org/uniprot/UBP14_ARATH UBP14_ARATH]] Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Involved in seed and embryo development.<ref>PMID:11576424</ref> <ref>PMID:11788751</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 07:47, 30 December 2020

OCA — Wed, 30 Dec 2020 07:47:42 GMT

←Older revision		Revision as of 07:47, 30 December 2020
Line 1:		Line 1:

	==solution structure of RSGI RUH-023, a UBA domain from Arabidopsis cDNA==		==solution structure of RSGI RUH-023, a UBA domain from Arabidopsis cDNA==
-	<StructureSection load='1wiv' size='340' side='right' caption='[[1wiv]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>	+	<StructureSection load='1wiv' size='340' side='right'caption='[[1wiv]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1wiv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WIV OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1WIV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1wiv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WIV OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1WIV FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">K10D20 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">K10D20 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1wiv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wiv OCA], [http://pdbe.org/1wiv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1wiv RCSB], [http://www.ebi.ac.uk/pdbsum/1wiv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1wiv ProSAT], [http://www.topsan.org/Proteins/RSGI/1wiv TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1wiv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wiv OCA], [http://pdbe.org/1wiv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1wiv RCSB], [http://www.ebi.ac.uk/pdbsum/1wiv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1wiv ProSAT], [http://www.topsan.org/Proteins/RSGI/1wiv TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 21:		Line 21:

	==See Also==		==See Also==
-	*[[Thioesterase\|Thioesterase]]	+	*[[Thioesterase 3D structures\|Thioesterase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 27:		Line 27:
	</StructureSection>		</StructureSection>
	[[Category: Arath]]		[[Category: Arath]]
		+	[[Category: Large Structures]]
	[[Category: Abe, T]]		[[Category: Abe, T]]
	[[Category: Higuchi, Y]]		[[Category: Higuchi, Y]]

OCA at 16:41, 11 April 2018

OCA — Wed, 11 Apr 2018 16:41:41 GMT

←Older revision		Revision as of 16:41, 11 April 2018
Line 1:		Line 1:
		+
	==solution structure of RSGI RUH-023, a UBA domain from Arabidopsis cDNA==		==solution structure of RSGI RUH-023, a UBA domain from Arabidopsis cDNA==
	<StructureSection load='1wiv' size='340' side='right' caption='[[1wiv]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='1wiv' size='340' side='right' caption='[[1wiv]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[1wiv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WIV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WIV FirstGlance]. <br>		<table><tr><td colspan='2'>[[1wiv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WIV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WIV FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">K10D20 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">K10D20 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wiv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wiv OCA], [http://pdbe.org/1wiv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1wiv RCSB], [http://www.ebi.ac.uk/pdbsum/1wiv PDBsum], [http://www.topsan.org/Proteins/RSGI/1wiv TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wiv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wiv OCA], [http://pdbe.org/1wiv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1wiv RCSB], [http://www.ebi.ac.uk/pdbsum/1wiv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1wiv ProSAT], [http://www.topsan.org/Proteins/RSGI/1wiv TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wi/1wiv_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wi/1wiv_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wiv ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

OCA at 01:07, 12 September 2015

OCA — Sat, 12 Sep 2015 01:07:16 GMT

←Older revision		Revision as of 01:07, 12 September 2015
Line 2:		Line 2:
	<StructureSection load='1wiv' size='340' side='right' caption='[[1wiv]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='1wiv' size='340' side='right' caption='[[1wiv]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1wiv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Arabidopsis_thaliana Arabidopsis thaliana~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WIV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WIV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1wiv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WIV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WIV FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">K10D20 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ~~Arabidopsis thaliana~~])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">K10D20 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wiv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wiv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1wiv RCSB], [http://www.ebi.ac.uk/pdbsum/1wiv PDBsum], [http://www.topsan.org/Proteins/RSGI/1wiv TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wiv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wiv OCA], [http://pdbe.org/1wiv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1wiv RCSB], [http://www.ebi.ac.uk/pdbsum/1wiv PDBsum], [http://www.topsan.org/Proteins/RSGI/1wiv TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 18:		Line 18:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+
		+	==See Also==
		+	*[[Thioesterase\|Thioesterase]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Arabidopsis thaliana~~]]	+	[[Category: Arath]]
	[[Category: Abe, T]]		[[Category: Abe, T]]
	[[Category: Higuchi, Y]]		[[Category: Higuchi, Y]]

OCA at 21:48, 25 December 2014

OCA — Thu, 25 Dec 2014 21:48:42 GMT

←Older revision		Revision as of 21:48, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1wiv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WIV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WIV FirstGlance]. <br>		<table><tr><td colspan='2'>[[1wiv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WIV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WIV FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">K10D20 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">K10D20 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wiv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wiv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1wiv RCSB], [http://www.ebi.ac.uk/pdbsum/1wiv PDBsum], [http://www.topsan.org/Proteins/RSGI/1wiv TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wiv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wiv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1wiv RCSB], [http://www.ebi.ac.uk/pdbsum/1wiv PDBsum], [http://www.topsan.org/Proteins/RSGI/1wiv TOPSAN]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/UBP14_ARATH UBP14_ARATH]] Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Involved in seed and embryo development.<ref>PMID:11576424</ref> <ref>PMID:11788751</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 16:		Line 18:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Arabidopsis thaliana]]		[[Category: Arabidopsis thaliana]]
-	[[Category: Abe, T.]]	+	[[Category: Abe, T]]
-	[[Category: Higuchi, Y.]]	+	[[Category: Higuchi, Y]]
-	[[Category: Hirota, H.]]	+	[[Category: Hirota, H]]
-	[[Category: Izumi, K~~.]]~~	+	[[Category: Izumi, K]]
-	~~[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]~~	+
-	~~[[Category: Yokoyama, S.]]~~	+
-	~~[[Category: Yoshida, M.]]~~	+
-	~~[[Category: Riken structural genomics/proteomics initiative]]~~	+
-	~~[[Category: Rsgi~~]]	+
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
		+	[[Category: Yokoyama, S]]
		+	[[Category: Yoshida, M]]
		+	[[Category: Rsgi]]
	[[Category: Three helix bundle]]		[[Category: Three helix bundle]]
	[[Category: Uba domain]]		[[Category: Uba domain]]

OCA at 21:10, 29 September 2014

OCA — Mon, 29 Sep 2014 21:10:55 GMT

←Older revision		Revision as of 21:10, 29 September 2014
Line 1:		Line 1:
-	~~[[Image:1wiv.png\|left\|200px]]~~	+	==solution structure of RSGI RUH-023, a UBA domain from Arabidopsis cDNA==
-		+	<StructureSection load='1wiv' size='340' side='right' caption='[[1wiv]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
-	~~{{STRUCTURE_1wiv\| PDB=1wiv \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[1wiv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WIV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WIV FirstGlance]. <br>
-	===solution structure of RSGI RUH-023, a UBA domain from Arabidopsis cDNA===	+	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">K10D20 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])</td></tr>
-		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wiv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wiv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1wiv RCSB], [http://www.ebi.ac.uk/pdbsum/1wiv PDBsum], [http://www.topsan.org/Proteins/RSGI/1wiv TOPSAN]</span></td></tr>
-		+	<table>
-	==~~About this Structure~~==	+	== Evolutionary Conservation ==
-	[[1wiv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WIV OCA].	+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wi/1wiv_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Arabidopsis thaliana]]		[[Category: Arabidopsis thaliana]]
	[[Category: Abe, T.]]		[[Category: Abe, T.]]

OCA: Protected "1wiv" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 12:14:47 GMT

Protected "1wiv" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:14, 5 January 2013

OCA at 12:14, 5 January 2013

OCA — Sat, 05 Jan 2013 12:14:44 GMT

←Older revision		Revision as of 12:14, 5 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1wiv.png\|left\|200px]]		[[Image:1wiv.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1wiv", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1wiv\| PDB=1wiv \| SCENE= }}		{{STRUCTURE_1wiv\| PDB=1wiv \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~1WIV~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WIV OCA].	+	[[1wiv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WIV OCA].
	[[Category: Arabidopsis thaliana]]		[[Category: Arabidopsis thaliana]]
	[[Category: Abe, T.]]		[[Category: Abe, T.]]
Line 30:		Line 23:
	[[Category: Ubiquitin associated domain]]		[[Category: Ubiquitin associated domain]]
	[[Category: Ubiquitin specific protease 14]]		[[Category: Ubiquitin specific protease 14]]
-		+	[[Category: Unknown function]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Sun Nov 16 16:44:46 2008''~~	+

OCA at 14:44, 16 November 2008

OCA — Sun, 16 Nov 2008 14:44:47 GMT

←Older revision		Revision as of 14:44, 16 November 2008
Line 14:		Line 14:

	==About this Structure==		==About this Structure==
-	1WIV is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WIV OCA].	+	1WIV is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WIV OCA].
	[[Category: Arabidopsis thaliana]]		[[Category: Arabidopsis thaliana]]
-	[[Category: Single protein]]
	[[Category: Abe, T.]]		[[Category: Abe, T.]]
	[[Category: Higuchi, Y.]]		[[Category: Higuchi, Y.]]
Line 32:		Line 31:
	[[Category: Ubiquitin specific protease 14]]		[[Category: Ubiquitin specific protease 14]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Sep 29 03~~:41:15 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 16:44:46 2008''