1wkn - Revision history

OCA at 16:20, 27 October 2021

OCA — Wed, 27 Oct 2021 16:20:32 GMT

←Older revision		Revision as of 16:20, 27 October 2021
Line 4:		Line 4:
	<StructureSection load='1wkn' size='340' side='right'caption='[[1wkn]]' scene=''>		<StructureSection load='1wkn' size='340' side='right'caption='[[1wkn]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1WKN FirstGlance]. <br>	+	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WKN FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1wkn FirstGlance], [~~http~~://www.ebi.ac.uk/pdbsum/1wkn PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1wkn ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wkn FirstGlance], [https://www.ebi.ac.uk/pdbsum/1wkn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wkn ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 17:12, 22 January 2020

OCA — Wed, 22 Jan 2020 17:12:00 GMT

←Older revision		Revision as of 17:12, 22 January 2020
Line 2:		Line 2:

	==A PLAUSIBLE MODEL OF FULL-LENGTH INTEGRASEDNA COMPLEX==		==A PLAUSIBLE MODEL OF FULL-LENGTH INTEGRASEDNA COMPLEX==
-	<StructureSection load='1wkn' size='340' side='right' caption='[[1wkn]]' scene=''>	+	<StructureSection load='1wkn' size='340' side='right'caption='[[1wkn]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WKN FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WKN FirstGlance]. <br>
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Theoretical Model]]		[[Category: Theoretical Model]]
		+	[[Category: Large Structures]]
	[[Category: Barreca, M L]]		[[Category: Barreca, M L]]
	[[Category: Chimirri, A]]		[[Category: Chimirri, A]]

OCA at 15:58, 11 April 2018

OCA — Wed, 11 Apr 2018 15:58:50 GMT

←Older revision		Revision as of 15:58, 11 April 2018
Line 5:		Line 5:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WKN FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WKN FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wkn FirstGlance], [http://www.ebi.ac.uk/pdbsum/1wkn PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wkn FirstGlance], [http://www.ebi.ac.uk/pdbsum/1wkn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1wkn ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 10:05, 11 February 2016

OCA — Thu, 11 Feb 2016 10:05:59 GMT

←Older revision		Revision as of 10:05, 11 February 2016
Line 1:		Line 1:
		+	{{Theoretical_model}}
		+
	==A PLAUSIBLE MODEL OF FULL-LENGTH INTEGRASEDNA COMPLEX==		==A PLAUSIBLE MODEL OF FULL-LENGTH INTEGRASEDNA COMPLEX==
	<StructureSection load='1wkn' size='340' side='right' caption='[[1wkn]]' scene=''>		<StructureSection load='1wkn' size='340' side='right' caption='[[1wkn]]' scene=''>
Line 18:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Theoretical Model]]
	[[Category: Barreca, M L]]		[[Category: Barreca, M L]]
	[[Category: Chimirri, A]]		[[Category: Chimirri, A]]

OCA at 07:26, 11 September 2015

OCA — Fri, 11 Sep 2015 07:26:13 GMT

←Older revision		Revision as of 07:26, 11 September 2015
Line 13:		Line 13:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1wkn" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 12:16, 6 January 2015

OCA — Tue, 06 Jan 2015 12:16:08 GMT

←Older revision		Revision as of 12:16, 6 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WKN FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WKN FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wkn FirstGlance], [http://www.ebi.ac.uk/pdbsum/1wkn PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wkn FirstGlance], [http://www.ebi.ac.uk/pdbsum/1wkn PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 22:11, 28 September 2014

OCA — Sun, 28 Sep 2014 22:11:03 GMT

←Older revision		Revision as of 22:11, 28 September 2014
Line 1:		Line 1:
-	~~{{Theoretical_model}}~~	+	==A PLAUSIBLE MODEL OF FULL-LENGTH INTEGRASEDNA COMPLEX==
		+	<StructureSection load='1wkn' size='340' side='right' caption='[[1wkn]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WKN FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wkn FirstGlance], [http://www.ebi.ac.uk/pdbsum/1wkn PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	A model of the full-length HIV-1 integrase dimer was constructed assembling the experimentally determined structures of the single domains. Subsequently, the three-domain protein-viral DNA complex was generated for the first time through an automated docking algorithm, obtained modifying the ESCHER program, a well-known method for protein-protein docking. A detailed study of the contacts established with DNA by the enzyme revealed that the predicted model reproduced the results of mutagenesis and cross-linking experiments, confirming the validity of our docking approach in predicting the base specificity in the DNA-protein interaction.

-	~~[[Image~~:~~1wkn~~.~~png\|left\|200px]]~~	+	Analysis of the full-length integrase-DNA complex by a modified approach for DNA docking.,De Luca L, Pedretti A, Vistoli G, Barreca ML, Villa L, Monforte P, Chimirri A Biochem Biophys Res Commun. 2003 Oct 31;310(4):1083-8. PMID:14559226<ref>PMID:14559226</ref>

-	~~{{STRUCTURE_1wkn\| PDB=1wkn \| SCENE= }}~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	==~~=A PLAUSIBLE MODEL OF FULL-LENGTH INTEGRASEDNA COMPLEX===~~	+	== References ==
-		+	<references/>
-	~~{{ABSTRACT_PUBMED_14559226}}~~	+	__TOC__
-		+	</StructureSection>
-	~~==Reference~~==	+
-	<~~ref group="xtra">PMID:014559226<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Barreca, M L]]		[[Category: Barreca, M L]]
	[[Category: Chimirri, A]]		[[Category: Chimirri, A]]

OCA: Protected "1wkn" [edit=sysop:move=sysop]

OCA — Sun, 21 Oct 2012 08:42:22 GMT

Protected "1wkn" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:42, 21 October 2012

OCA at 08:42, 21 October 2012

OCA — Sun, 21 Oct 2012 08:42:17 GMT

←Older revision		Revision as of 08:42, 21 October 2012
Line 1:		Line 1:
	{{Theoretical_model}}		{{Theoretical_model}}
-	~~{{Seed}}~~	+
	[[Image:1wkn.png\|left\|200px]]		[[Image:1wkn.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1wkn", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1wkn\| PDB=1wkn \| SCENE= }}		{{STRUCTURE_1wkn\| PDB=1wkn \| SCENE= }}

	===A PLAUSIBLE MODEL OF FULL-LENGTH INTEGRASEDNA COMPLEX===		===A PLAUSIBLE MODEL OF FULL-LENGTH INTEGRASEDNA COMPLEX===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_14559226}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 14559226 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_14559226}}		{{ABSTRACT_PUBMED_14559226}}
-
-	==About this Structure==
-	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WKN OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~14559226~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:014559226</ref><references group="xtra"/>
	[[Category: Barreca, M L]]		[[Category: Barreca, M L]]
	[[Category: Chimirri, A]]		[[Category: Chimirri, A]]
Line 32:		Line 18:
	[[Category: Villa, L]]		[[Category: Villa, L]]
	[[Category: Vistoli, G]]		[[Category: Vistoli, G]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 06:41:09 2010''

OCA at 03:41, 8 April 2010

OCA — Thu, 08 Apr 2010 03:41:10 GMT

←Older revision		Revision as of 03:41, 8 April 2010
Line 1:		Line 1:
-	~~'''Theoretical Model'''~~	+	{{Theoretical_model}}
		+	{{Seed}}
		+	[[Image:1wkn.png\|left\|200px]]

-	The ~~entry 1WKN~~ is ~~a Theoretical Model titled 'A plausible model of full-length integraseDNA complex'~~.	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_1wkn", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_1wkn\| PDB=1wkn \| SCENE= }}

-	~~[[Category:Theoretical Model]]~~	+	===A PLAUSIBLE MODEL OF FULL-LENGTH INTEGRASEDNA COMPLEX===


-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Jul 30 09~~:54:~~35 2008~~''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_14559226}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 14559226 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_14559226}}
		+
		+	==About this Structure==
		+	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WKN OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:14559226</ref><references group="xtra"/>
		+	[[Category: Barreca, M L]]
		+	[[Category: Chimirri, A]]
		+	[[Category: De Luca, L]]
		+	[[Category: Monforte, P]]
		+	[[Category: Pedretti, A]]
		+	[[Category: Villa, L]]
		+	[[Category: Vistoli, G]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 06:41:09 2010''