1wql - Revision history

OCA at 07:58, 25 October 2023

OCA — Wed, 25 Oct 2023 07:58:04 GMT

←Older revision		Revision as of 07:58, 25 October 2023
Line 3:		Line 3:
	<StructureSection load='1wql' size='340' side='right'caption='[[1wql]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1wql' size='340' side='right'caption='[[1wql]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1wql]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacillus_fluorescens_liquefaciens"_flugge_1886 "bacillus~~ fluorescens ~~liquefaciens" flugge 1886~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WQL OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1WQL FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1wql]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_fluorescens Pseudomonas fluorescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WQL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WQL FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene>~~</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.2Å</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CUMA1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=294 "Bacillus fluorescens liquefaciens" Flugge 1886]), CUMA2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=294 "Bacillus fluorescens liquefaciens" Flugge 1886])</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1wql FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wql OCA], [~~http~~://pdbe.org/1wql PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1wql RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1wql PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1wql ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wql FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wql OCA], [https://pdbe.org/1wql PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wql RCSB], [https://www.ebi.ac.uk/pdbsum/1wql PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wql ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q51743_PSEFL Q51743_PSEFL]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Bacillus fluorescens liquefaciens flugge 1886]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Dong, X]]	+	[[Category: Pseudomonas fluorescens]]
-	[[Category: Fukuda, E]]	+	[[Category: Dong X]]
-	[[Category: Fushinobu, S]]	+	[[Category: Fukuda E]]
-	[[Category: Nakamura, S]]	+	[[Category: Fushinobu S]]
-	[[Category: Nojiri, H]]	+	[[Category: Nakamura S]]
-	[[Category: Omori, T]]	+	[[Category: Nojiri H]]
-	[[Category: Shimizu, K]]	+	[[Category: Omori T]]
-	[[Category: Shoun, H]]	+	[[Category: Shimizu K]]
-	[[Category: Terada, T]]	+	[[Category: Shoun H]]
-	[[Category: Wakagi, T]]	+	[[Category: Terada T]]
-	~~[[Category: Biphenyl dioxygenase]]~~	+	[[Category: Wakagi T]]
-	~~[[Category: Cumene dioxygenase]]~~	+
-	~~[[Category: Naphthalene dioxygenase]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: Polychlorinated biphenyl degradation]]~~	+
-	~~[[Category: Rieske non-heme iron dioxygenase~~]]	+

OCA at 09:26, 6 January 2021

OCA — Wed, 06 Jan 2021 09:26:12 GMT

←Older revision		Revision as of 09:26, 6 January 2021
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	==Cumene dioxygenase (cumA1A2) from Pseudomonas fluorescens IP01==		==Cumene dioxygenase (cumA1A2) from Pseudomonas fluorescens IP01==
-	<StructureSection load='1wql' size='340' side='right' caption='[[1wql]], [[Resolution\|resolution]] 2.20Å' scene=''>	+	<StructureSection load='1wql' size='340' side='right'caption='[[1wql]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1wql]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_fluorescens_liquefaciens"_flugge_1886 "bacillus fluorescens liquefaciens" flugge 1886]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WQL OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1WQL FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1wql]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_fluorescens_liquefaciens"_flugge_1886 "bacillus fluorescens liquefaciens" flugge 1886]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WQL OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1WQL FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CUMA1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=294 "Bacillus fluorescens liquefaciens" Flugge 1886]), CUMA2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=294 "Bacillus fluorescens liquefaciens" Flugge 1886])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CUMA1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=294 "Bacillus fluorescens liquefaciens" Flugge 1886]), CUMA2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=294 "Bacillus fluorescens liquefaciens" Flugge 1886])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1wql FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wql OCA], [http://pdbe.org/1wql PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1wql RCSB], [http://www.ebi.ac.uk/pdbsum/1wql PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1wql ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1wql FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wql OCA], [http://pdbe.org/1wql PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1wql RCSB], [http://www.ebi.ac.uk/pdbsum/1wql PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1wql ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	</StructureSection>		</StructureSection>
	[[Category: Bacillus fluorescens liquefaciens flugge 1886]]		[[Category: Bacillus fluorescens liquefaciens flugge 1886]]
		+	[[Category: Large Structures]]
	[[Category: Dong, X]]		[[Category: Dong, X]]
	[[Category: Fukuda, E]]		[[Category: Fukuda, E]]

OCA at 16:16, 11 April 2018

OCA — Wed, 11 Apr 2018 16:16:16 GMT

←Older revision		Revision as of 16:16, 11 April 2018
Line 1:		Line 1:
		+
	==Cumene dioxygenase (cumA1A2) from Pseudomonas fluorescens IP01==		==Cumene dioxygenase (cumA1A2) from Pseudomonas fluorescens IP01==
	<StructureSection load='1wql' size='340' side='right' caption='[[1wql]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1wql' size='340' side='right' caption='[[1wql]], [[Resolution\|resolution]] 2.20Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CUMA1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=294 "Bacillus fluorescens liquefaciens" Flugge 1886]), CUMA2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=294 "Bacillus fluorescens liquefaciens" Flugge 1886])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CUMA1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=294 "Bacillus fluorescens liquefaciens" Flugge 1886]), CUMA2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=294 "Bacillus fluorescens liquefaciens" Flugge 1886])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wql FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wql OCA], [http://pdbe.org/1wql PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1wql RCSB], [http://www.ebi.ac.uk/pdbsum/1wql PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wql FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wql OCA], [http://pdbe.org/1wql PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1wql RCSB], [http://www.ebi.ac.uk/pdbsum/1wql PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1wql ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wq/1wql_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wq/1wql_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 04:16, 8 February 2016

OCA — Mon, 08 Feb 2016 04:16:35 GMT

←Older revision		Revision as of 04:16, 8 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wql ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 07:46, 10 September 2015

OCA — Thu, 10 Sep 2015 07:46:33 GMT

←Older revision		Revision as of 07:46, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1wql' size='340' side='right' caption='[[1wql]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1wql' size='340' side='right' caption='[[1wql]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1wql]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pseudomonas_fluorescens Pseudomonas~~ fluorescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WQL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WQL FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1wql]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_fluorescens_liquefaciens"_flugge_1886 "bacillus fluorescens liquefaciens" flugge 1886]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WQL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WQL FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CUMA1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=294 ~~Pseudomonas~~ fluorescens]), CUMA2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=294 ~~Pseudomonas~~ fluorescens])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CUMA1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=294 "Bacillus fluorescens liquefaciens" Flugge 1886]), CUMA2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=294 "Bacillus fluorescens liquefaciens" Flugge 1886])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wql FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wql OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1wql RCSB], [http://www.ebi.ac.uk/pdbsum/1wql PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wql FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wql OCA], [http://pdbe.org/1wql PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1wql RCSB], [http://www.ebi.ac.uk/pdbsum/1wql PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1wql" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Pseudomonas~~ fluorescens]]	+	[[Category: Bacillus fluorescens liquefaciens flugge 1886]]
	[[Category: Dong, X]]		[[Category: Dong, X]]
	[[Category: Fukuda, E]]		[[Category: Fukuda, E]]

OCA at 13:38, 6 January 2015

OCA — Tue, 06 Jan 2015 13:38:14 GMT

←Older revision		Revision as of 13:38, 6 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1wql]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_fluorescens Pseudomonas fluorescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WQL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WQL FirstGlance]. <br>		<table><tr><td colspan='2'>[[1wql]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_fluorescens Pseudomonas fluorescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WQL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WQL FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CUMA1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=294 Pseudomonas fluorescens]), CUMA2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=294 Pseudomonas fluorescens])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CUMA1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=294 Pseudomonas fluorescens]), CUMA2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=294 Pseudomonas fluorescens])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wql FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wql OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1wql RCSB], [http://www.ebi.ac.uk/pdbsum/1wql PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wql FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wql OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1wql RCSB], [http://www.ebi.ac.uk/pdbsum/1wql PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 30:
	</StructureSection>		</StructureSection>
	[[Category: Pseudomonas fluorescens]]		[[Category: Pseudomonas fluorescens]]
-	[[Category: Dong, X.]]	+	[[Category: Dong, X]]
-	[[Category: Fukuda, E.]]	+	[[Category: Fukuda, E]]
-	[[Category: Fushinobu, S.]]	+	[[Category: Fushinobu, S]]
-	[[Category: Nakamura, S.]]	+	[[Category: Nakamura, S]]
-	[[Category: Nojiri, H.]]	+	[[Category: Nojiri, H]]
-	[[Category: Omori, T.]]	+	[[Category: Omori, T]]
-	[[Category: Shimizu, K.]]	+	[[Category: Shimizu, K]]
-	[[Category: Shoun, H.]]	+	[[Category: Shoun, H]]
-	[[Category: Terada, T.]]	+	[[Category: Terada, T]]
-	[[Category: Wakagi, T.]]	+	[[Category: Wakagi, T]]
	[[Category: Biphenyl dioxygenase]]		[[Category: Biphenyl dioxygenase]]
	[[Category: Cumene dioxygenase]]		[[Category: Cumene dioxygenase]]

OCA at 20:56, 29 September 2014

OCA — Mon, 29 Sep 2014 20:56:30 GMT

←Older revision		Revision as of 20:56, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1wql.~~png~~\|~~left~~\|200px]]	+	==Cumene dioxygenase (cumA1A2) from Pseudomonas fluorescens IP01==
		+	<StructureSection load='1wql' size='340' side='right' caption='[[1wql]], [[Resolution\|resolution]] 2.20Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1wql]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_fluorescens Pseudomonas fluorescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WQL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1WQL FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CUMA1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=294 Pseudomonas fluorescens]), CUMA2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=294 Pseudomonas fluorescens])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1wql FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wql OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1wql RCSB], [http://www.ebi.ac.uk/pdbsum/1wql PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wq/1wql_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The crystal structure of the terminal component of the cumene dioxygenase multicomponent enzyme system of Pseudomonas fluorescens IP01 (CumDO) was determined at a resolution of 2.2 A by means of molecular replacement by using the crystal structure of the terminal oxygenase component of naphthalene dioxygenase from Pseudomonas sp. strain NCIB 9816-4 (NphDO). The ligation of the two catalytic centers of CumDO (i.e., the nonheme iron and Rieske [2Fe-2S] centers) and the bridging between them in neighboring catalytic subunits by hydrogen bonds through a single amino acid residue, Asp231, are similar to those of NphDO. An unidentified external ligand, possibly dioxygen, was bound at the active site nonheme iron. The entrance to the active site of CumDO is different from the entrance to the active site of NphDO, as the two loops forming the lid exhibit great deviation. On the basis of the complex structure of NphDO, a biphenyl substrate was modeled in the substrate-binding pocket of CumDO. The residues surrounding the modeled biphenyl molecule include residues that have already been shown to be important for its substrate specificity by a number of engineering studies of biphenyl dioxygenases.

-	~~{{STRUCTURE_1wql\| PDB=1wql \| SCENE= }}~~	+	Crystal structure of the terminal oxygenase component of cumene dioxygenase from Pseudomonas fluorescens IP01.,Dong X, Fushinobu S, Fukuda E, Terada T, Nakamura S, Shimizu K, Nojiri H, Omori T, Shoun H, Wakagi T J Bacteriol. 2005 Apr;187(7):2483-90. PMID:15774891<ref>PMID:15774891</ref>

-	~~===Cumene dioxygenase (cumA1A2) from Pseudomonas fluorescens IP01===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_15774891}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1wql]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Pseudomonas_fluorescens Pseudomonas fluorescens]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1WQL OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:015774891<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Pseudomonas fluorescens]]		[[Category: Pseudomonas fluorescens]]
	[[Category: Dong, X.]]		[[Category: Dong, X.]]

OCA: Protected "1wql" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 11:53:48 GMT

Protected "1wql" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:53, 5 January 2013

OCA at 11:53, 5 January 2013

OCA — Sat, 05 Jan 2013 11:53:45 GMT

←Older revision		Revision as of 11:53, 5 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1wql.png\|left\|200px]]		[[Image:1wql.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1wql", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1wql\| PDB=1wql \| SCENE= }}		{{STRUCTURE_1wql\| PDB=1wql \| SCENE= }}

	===Cumene dioxygenase (cumA1A2) from Pseudomonas fluorescens IP01===		===Cumene dioxygenase (cumA1A2) from Pseudomonas fluorescens IP01===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_15774891}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 15774891 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_15774891}}		{{ABSTRACT_PUBMED_15774891}}

	==About this Structure==		==About this Structure==
-	~~1WQL~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Pseudomonas_fluorescens Pseudomonas fluorescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WQL OCA].	+	[[1wql]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_fluorescens Pseudomonas fluorescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WQL OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15774891~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015774891</ref><references group="xtra"/>
	[[Category: Pseudomonas fluorescens]]		[[Category: Pseudomonas fluorescens]]
	[[Category: Dong, X.]]		[[Category: Dong, X.]]
Line 38:		Line 26:
	[[Category: Cumene dioxygenase]]		[[Category: Cumene dioxygenase]]
	[[Category: Naphthalene dioxygenase]]		[[Category: Naphthalene dioxygenase]]
		+	[[Category: Oxidoreductase]]
	[[Category: Polychlorinated biphenyl degradation]]		[[Category: Polychlorinated biphenyl degradation]]
	[[Category: Rieske non-heme iron dioxygenase]]		[[Category: Rieske non-heme iron dioxygenase]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 18:44:50 2009''

OCA at 16:44, 16 February 2009

OCA — Mon, 16 Feb 2009 16:44:51 GMT

←Older revision		Revision as of 16:44, 16 February 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	1WQL is a ~~[[Protein complex]]~~ structure of sequences from [http://en.wikipedia.org/wiki/Pseudomonas_fluorescens Pseudomonas fluorescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WQL OCA].	+	1WQL is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Pseudomonas_fluorescens Pseudomonas fluorescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WQL OCA].

	==Reference==		==Reference==
-	Crystal structure of the terminal oxygenase component of cumene dioxygenase from Pseudomonas fluorescens IP01., Dong X, Fushinobu S, Fukuda E, Terada T, Nakamura S, Shimizu K, Nojiri H, Omori T, Shoun H, Wakagi T, J Bacteriol. 2005 Apr;187(7):2483-90. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/15774891 15774891]~~	+	<ref group="xtra">PMID:15774891</ref><references group="xtra"/>
-	~~[[Category: Protein complex]]~~	+
	[[Category: Pseudomonas fluorescens]]		[[Category: Pseudomonas fluorescens]]
	[[Category: Dong, X.]]		[[Category: Dong, X.]]
Line 42:		Line 41:
	[[Category: Rieske non-heme iron dioxygenase]]		[[Category: Rieske non-heme iron dioxygenase]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sun Jul 27 23~~:01:~~24 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 18:44:50 2009''