1x1n - Revision history

OCA at 08:04, 25 October 2023

OCA — Wed, 25 Oct 2023 08:04:12 GMT

←Older revision		Revision as of 08:04, 25 October 2023
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	<StructureSection load='1x1n' size='340' side='right'caption='[[1x1n]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1x1n' size='340' side='right'caption='[[1x1n]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1x1n]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Potato Potato~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X1N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1X1N FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1x1n]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Solanum_tuberosum Solanum tuberosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X1N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1X1N FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>~~, ~~<scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[1ww0\|1ww0]]~~</~~div~~><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks~~'>~~[https://en.wikipedia.org/wiki/4-alpha-glucanotransferase 4-alpha-glucanotransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.25 2.4.1.25]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1x1n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x1n OCA], [https://pdbe.org/1x1n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1x1n RCSB], [https://www.ebi.ac.uk/pdbsum/1x1n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1x1n ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1x1n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x1n OCA], [https://pdbe.org/1x1n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1x1n RCSB], [https://www.ebi.ac.uk/pdbsum/1x1n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1x1n ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/DPEP_SOLTU DPEP_SOLTU]] May act during starch breakdown to convert small oligosaccharides into larger molecules upon which starch phosphorylase can act, or may change the structure of starch molecules and grain architecture by modifying chain length, or may generate from starch and glucose oligosaccharides which can serve either as primers for new starch phosphoenzyme.	+	[https://www.uniprot.org/uniprot/DPEP_SOLTU DPEP_SOLTU] May act during starch breakdown to convert small oligosaccharides into larger molecules upon which starch phosphorylase can act, or may change the structure of starch molecules and grain architecture by modifying chain length, or may generate from starch and glucose oligosaccharides which can serve either as primers for new starch phosphoenzyme.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 23:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: 4-alpha-glucanotransferase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Potato~~]]	+	[[Category: Solanum tuberosum]]
-	[[Category: Fujii, K]]	+	[[Category: Fujii K]]
-	[[Category: Imamura, K]]	+	[[Category: Imamura K]]
-	[[Category: Kusunoki, M]]	+	[[Category: Kusunoki M]]
-	[[Category: Matsuura, T]]	+	[[Category: Matsuura T]]
-	[[Category: Nakagawa, A]]	+	[[Category: Nakagawa A]]
-	[[Category: Nitta, Y]]	+	[[Category: Nitta Y]]
-	[[Category: Takaha, T]]	+	[[Category: Takaha T]]
-	~~[[Category: Amylomaltase]]~~	+
-	~~[[Category: D-enzyme]]~~	+
-	~~[[Category: Disproportionating enzyme]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 16:32, 27 October 2021

OCA — Wed, 27 Oct 2021 16:32:20 GMT

←Older revision		Revision as of 16:32, 27 October 2021
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	<StructureSection load='1x1n' size='340' side='right'caption='[[1x1n]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1x1n' size='340' side='right'caption='[[1x1n]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1x1n]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Potato Potato]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X1N OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1X1N FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1x1n]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Potato Potato]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X1N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1X1N FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ww0\|1ww0]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1ww0\|1ww0]]</div></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/4-alpha-glucanotransferase 4-alpha-glucanotransferase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.25 2.4.1.25] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/4-alpha-glucanotransferase 4-alpha-glucanotransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.25 2.4.1.25] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1x1n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x1n OCA], [~~http~~://pdbe.org/1x1n PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1x1n RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1x1n PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1x1n ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1x1n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x1n OCA], [https://pdbe.org/1x1n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1x1n RCSB], [https://www.ebi.ac.uk/pdbsum/1x1n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1x1n ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/DPEP_SOLTU DPEP_SOLTU]] May act during starch breakdown to convert small oligosaccharides into larger molecules upon which starch phosphorylase can act, or may change the structure of starch molecules and grain architecture by modifying chain length, or may generate from starch and glucose oligosaccharides which can serve either as primers for new starch phosphoenzyme.	+	[[https://www.uniprot.org/uniprot/DPEP_SOLTU DPEP_SOLTU]] May act during starch breakdown to convert small oligosaccharides into larger molecules upon which starch phosphorylase can act, or may change the structure of starch molecules and grain architecture by modifying chain length, or may generate from starch and glucose oligosaccharides which can serve either as primers for new starch phosphoenzyme.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 17:48, 22 January 2020

OCA — Wed, 22 Jan 2020 17:48:09 GMT

←Older revision		Revision as of 17:48, 22 January 2020
Line 1:		Line 1:

	==Structure determination and refinement at 1.8 A resolution of Disproportionating Enzyme from Potato==		==Structure determination and refinement at 1.8 A resolution of Disproportionating Enzyme from Potato==
-	<StructureSection load='1x1n' size='340' side='right' caption='[[1x1n]], [[Resolution\|resolution]] 1.80Å' scene=''>	+	<StructureSection load='1x1n' size='340' side='right'caption='[[1x1n]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1x1n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Potato Potato]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X1N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1X1N FirstGlance]. <br>		<table><tr><td colspan='2'>[[1x1n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Potato Potato]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X1N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1X1N FirstGlance]. <br>
Line 24:		Line 24:
	</StructureSection>		</StructureSection>
	[[Category: 4-alpha-glucanotransferase]]		[[Category: 4-alpha-glucanotransferase]]
		+	[[Category: Large Structures]]
	[[Category: Potato]]		[[Category: Potato]]
	[[Category: Fujii, K]]		[[Category: Fujii, K]]

OCA at 16:31, 11 April 2018

OCA — Wed, 11 Apr 2018 16:31:43 GMT

←Older revision		Revision as of 16:31, 11 April 2018
Line 1:		Line 1:
		+
	==Structure determination and refinement at 1.8 A resolution of Disproportionating Enzyme from Potato==		==Structure determination and refinement at 1.8 A resolution of Disproportionating Enzyme from Potato==
	<StructureSection load='1x1n' size='340' side='right' caption='[[1x1n]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1x1n' size='340' side='right' caption='[[1x1n]], [[Resolution\|resolution]] 1.80Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ww0\|1ww0]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ww0\|1ww0]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/4-alpha-glucanotransferase 4-alpha-glucanotransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.25 2.4.1.25] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/4-alpha-glucanotransferase 4-alpha-glucanotransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.25 2.4.1.25] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1x1n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x1n OCA], [http://pdbe.org/1x1n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1x1n RCSB], [http://www.ebi.ac.uk/pdbsum/1x1n PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1x1n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x1n OCA], [http://pdbe.org/1x1n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1x1n RCSB], [http://www.ebi.ac.uk/pdbsum/1x1n PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1x1n ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 14:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/x1/1x1n_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/x1/1x1n_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 01:16, 8 February 2016

OCA — Mon, 08 Feb 2016 01:16:33 GMT

←Older revision		Revision as of 01:16, 8 February 2016
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1x1n ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 06:31, 10 September 2015

OCA — Thu, 10 Sep 2015 06:31:58 GMT

←Older revision		Revision as of 06:31, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1x1n' size='340' side='right' caption='[[1x1n]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='1x1n' size='340' side='right' caption='[[1x1n]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1x1n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Solanum_tuberosum Solanum tuberosum~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X1N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1X1N FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1x1n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Potato Potato]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X1N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1X1N FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ww0\|1ww0]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ww0\|1ww0]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/4-alpha-glucanotransferase 4-alpha-glucanotransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.25 2.4.1.25] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/4-alpha-glucanotransferase 4-alpha-glucanotransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.25 2.4.1.25] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1x1n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x1n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1x1n RCSB], [http://www.ebi.ac.uk/pdbsum/1x1n PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1x1n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x1n OCA], [http://pdbe.org/1x1n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1x1n RCSB], [http://www.ebi.ac.uk/pdbsum/1x1n PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 23:		Line 23:
	</StructureSection>		</StructureSection>
	[[Category: 4-alpha-glucanotransferase]]		[[Category: 4-alpha-glucanotransferase]]
-	[[Category: ~~Solanum tuberosum~~]]	+	[[Category: Potato]]
	[[Category: Fujii, K]]		[[Category: Fujii, K]]
	[[Category: Imamura, K]]		[[Category: Imamura, K]]

OCA at 19:30, 24 December 2014

OCA — Wed, 24 Dec 2014 19:30:25 GMT

←Older revision		Revision as of 19:30, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1x1n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Solanum_tuberosum Solanum tuberosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X1N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1X1N FirstGlance]. <br>		<table><tr><td colspan='2'>[[1x1n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Solanum_tuberosum Solanum tuberosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X1N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1X1N FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ww0\|1ww0]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ww0\|1ww0]]</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/4-alpha-glucanotransferase 4-alpha-glucanotransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.25 2.4.1.25] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/4-alpha-glucanotransferase 4-alpha-glucanotransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.25 2.4.1.25] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1x1n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x1n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1x1n RCSB], [http://www.ebi.ac.uk/pdbsum/1x1n PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1x1n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x1n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1x1n RCSB], [http://www.ebi.ac.uk/pdbsum/1x1n PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/DPEP_SOLTU DPEP_SOLTU]] May act during starch breakdown to convert small oligosaccharides into larger molecules upon which starch phosphorylase can act, or may change the structure of starch molecules and grain architecture by modifying chain length, or may generate from starch and glucose oligosaccharides which can serve either as primers for new starch phosphoenzyme.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 22:		Line 24:
	[[Category: 4-alpha-glucanotransferase]]		[[Category: 4-alpha-glucanotransferase]]
	[[Category: Solanum tuberosum]]		[[Category: Solanum tuberosum]]
-	[[Category: Fujii, K.]]	+	[[Category: Fujii, K]]
-	[[Category: Imamura, K.]]	+	[[Category: Imamura, K]]
-	[[Category: Kusunoki, M.]]	+	[[Category: Kusunoki, M]]
-	[[Category: Matsuura, T.]]	+	[[Category: Matsuura, T]]
-	[[Category: Nakagawa, A.]]	+	[[Category: Nakagawa, A]]
-	[[Category: Nitta, Y.]]	+	[[Category: Nitta, Y]]
-	[[Category: Takaha, T.]]	+	[[Category: Takaha, T]]
	[[Category: Amylomaltase]]		[[Category: Amylomaltase]]
	[[Category: D-enzyme]]		[[Category: D-enzyme]]
	[[Category: Disproportionating enzyme]]		[[Category: Disproportionating enzyme]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 20:07, 29 September 2014

OCA — Mon, 29 Sep 2014 20:07:33 GMT

←Older revision		Revision as of 20:07, 29 September 2014
Line 1:		Line 1:
-	~~[[Image:1x1n.png\|left\|200px]]~~	+	==Structure determination and refinement at 1.8 A resolution of Disproportionating Enzyme from Potato==
-		+	<StructureSection load='1x1n' size='340' side='right' caption='[[1x1n]], [[Resolution\|resolution]] 1.80Å' scene=''>
-	~~{{STRUCTURE_1x1n\| PDB=1x1n \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[1x1n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Solanum_tuberosum Solanum tuberosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X1N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1X1N FirstGlance]. <br>
-	===Structure determination and refinement at 1.8 A resolution of Disproportionating Enzyme from Potato===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1ww0\|1ww0]]</td></tr>
-		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/4-alpha-glucanotransferase 4-alpha-glucanotransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.1.25 2.4.1.25] </span></td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1x1n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x1n OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1x1n RCSB], [http://www.ebi.ac.uk/pdbsum/1x1n PDBsum]</span></td></tr>
-	[[1x1n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Solanum_tuberosum Solanum tuberosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X1N OCA].	+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/x1/1x1n_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: 4-alpha-glucanotransferase]]		[[Category: 4-alpha-glucanotransferase]]
	[[Category: Solanum tuberosum]]		[[Category: Solanum tuberosum]]

OCA: Protected "1x1n" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 13:39:25 GMT

Protected "1x1n" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:39, 5 January 2013

OCA at 13:39, 5 January 2013

OCA — Sat, 05 Jan 2013 13:39:23 GMT

←Older revision		Revision as of 13:39, 5 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1x1n.png\|left\|200px]]		[[Image:1x1n.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1x1n", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1x1n\| PDB=1x1n \| SCENE= }}		{{STRUCTURE_1x1n\| PDB=1x1n \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~1X1N~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Solanum_tuberosum Solanum tuberosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X1N OCA].	+	[[1x1n]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Solanum_tuberosum Solanum tuberosum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X1N OCA].
	[[Category: 4-alpha-glucanotransferase]]		[[Category: 4-alpha-glucanotransferase]]
	[[Category: Solanum tuberosum]]		[[Category: Solanum tuberosum]]
Line 27:		Line 20:
	[[Category: D-enzyme]]		[[Category: D-enzyme]]
	[[Category: Disproportionating enzyme]]		[[Category: Disproportionating enzyme]]
-		+	[[Category: Transferase]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Mon Feb 16 17:45:19 2009''~~	+