1x6j - Revision history

OCA at 08:48, 14 February 2024

OCA — Wed, 14 Feb 2024 08:48:06 GMT

←Older revision		Revision as of 08:48, 14 February 2024
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	<StructureSection load='1x6j' size='340' side='right'caption='[[1x6j]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1x6j' size='340' side='right'caption='[[1x6j]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1x6j]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacillus_coli"_migula_1895 "bacillus~~ coli~~" migula 1895~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X6J OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1X6J FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1x6j]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X6J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1X6J FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style='overflow: auto; max-height: 3em;'>[[1x6i\|1x6i]]</div></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2Å</td></tr>
-	~~<tr~~ id~~='gene'><td class~~="~~sblockLbl~~">~~<b>~~[[~~Gene~~\|~~Gene:~~]]~~</b></td><td class="sblockDat">ygfY ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info~~&~~srchmode=5&id=562 "Bacillus coli" Migula 1895])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1x6j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x6j OCA], [https://pdbe.org/1x6j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1x6j RCSB], [https://www.ebi.ac.uk/pdbsum/1x6j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1x6j ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1x6j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x6j OCA], [~~http~~://pdbe.org/1x6j PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1x6j RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1x6j PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1x6j ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/~~CPTB_ECOLI CPTB_ECOLI~~]~~] Antitoxin component~~ of ~~a toxin-antitoxin~~ (TA) ~~module~~. ~~When coexpressed~~ with ~~cognate toxin CptA~~, the ~~antitoxin neutralizes CptA's toxicity~~. ~~Has been suggested~~ to ~~be a transcriptional regulator~~.<ref>PMID:~~22239607~~</ref>	+	[https://www.uniprot.org/uniprot/SDHE_ECOLI SDHE_ECOLI] An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins (PubMed:22474332, PubMed:26644464, PubMed:24374335). Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH (PubMed:24374335, PubMed:26644464, PubMed:22474332). Required for flavinylation of the flavoprotein subunit FdrA of fumarate reductase (FDR) (PubMed:26644464). Binds 2 different sites on the flavoprotein target FrdA (and presumably also SdhA), possibly positioning FAD and protein to facilitate the covalent bond formation; covalent attachment of FAD is not required for SDH or FDR complex enzyme formation (PubMed:26644464). Overexpression of this protein and YgfX (formerly cptA) restores production of prodigiosin antibiotic (Pig) in Serratia strains with deletions of sdhE-ygfX (PubMed:22474332).<ref>PMID:23657679</ref> <ref>PMID:24374335</ref> <ref>PMID:26644464</ref> <ref>PMID:22474332</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus~~ coli ~~migula 1895~~]]	+	[[Category: Escherichia coli]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Demirkan, E Sarikaya]]~~	+	[[Category: Doseeva V]]
-	[[Category: Doseeva, V]]	+	[[Category: Galkin A]]
-	[[Category: Galkin, A]]	+	[[Category: Herzberg O]]
-	[[Category: Herzberg, O]]	+	[[Category: Howard A]]
-	[[Category: Howard, A]]	+	[[Category: Krajewski W]]
-	[[Category: Krajewski, W]]	+	[[Category: Lim K]]
-	[[Category: Lim, K]]	+	[[Category: Pullalarevu S]]
-	[[Category: Pullalarevu, S]]	+	[[Category: Sarikaya Demirkan E]]
-	[[Category: ~~S2F, Structure 2.Function Project]]~~	+
-	~~[[Category: Hypothetical protein]]~~	+
-	~~[[Category: S2f]]~~	+
-	~~[[Category: Structural genomic]]~~	+
-	~~[[Category: Structure 2 function project]]~~	+
-	~~[[Category: Transcriptional regulation]]~~	+
-	~~[[Category: Unknown function]]~~	+
-	~~[[Category: Ygfy~~]]	+

OCA at 09:43, 6 January 2021

OCA — Wed, 06 Jan 2021 09:43:53 GMT

←Older revision		Revision as of 09:43, 6 January 2021
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	==Crystal structure of ygfY from Escherichia coli==		==Crystal structure of ygfY from Escherichia coli==
-	<StructureSection load='1x6j' size='340' side='right' caption='[[1x6j]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='1x6j' size='340' side='right'caption='[[1x6j]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1x6j]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X6J OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1X6J FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1x6j]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X6J OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1X6J FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1x6i\|1x6i]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1x6i\|1x6i]]</div></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ygfY ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ygfY ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1x6j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x6j OCA], [http://pdbe.org/1x6j PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1x6j RCSB], [http://www.ebi.ac.uk/pdbsum/1x6j PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1x6j ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1x6j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x6j OCA], [http://pdbe.org/1x6j PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1x6j RCSB], [http://www.ebi.ac.uk/pdbsum/1x6j PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1x6j ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/x6/1x6j_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/x6/1x6j_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
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	</StructureSection>		</StructureSection>
	[[Category: Bacillus coli migula 1895]]		[[Category: Bacillus coli migula 1895]]
		+	[[Category: Large Structures]]
	[[Category: Demirkan, E Sarikaya]]		[[Category: Demirkan, E Sarikaya]]
	[[Category: Doseeva, V]]		[[Category: Doseeva, V]]

OCA at 12:39, 12 October 2017

OCA — Thu, 12 Oct 2017 12:39:50 GMT

←Older revision		Revision as of 12:39, 12 October 2017
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		+
	==Crystal structure of ygfY from Escherichia coli==		==Crystal structure of ygfY from Escherichia coli==
	<StructureSection load='1x6j' size='340' side='right' caption='[[1x6j]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1x6j' size='340' side='right' caption='[[1x6j]], [[Resolution\|resolution]] 2.00Å' scene=''>
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	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1x6i\|1x6i]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1x6i\|1x6i]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ygfY ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ygfY ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1x6j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x6j OCA], [http://pdbe.org/1x6j PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1x6j RCSB], [http://www.ebi.ac.uk/pdbsum/1x6j PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1x6j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x6j OCA], [http://pdbe.org/1x6j PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1x6j RCSB], [http://www.ebi.ac.uk/pdbsum/1x6j PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1x6j ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 19:40, 8 February 2016

OCA — Mon, 08 Feb 2016 19:40:07 GMT

←Older revision		Revision as of 19:40, 8 February 2016
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1x6j ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	== References ==		== References ==

OCA at 14:46, 10 September 2015

OCA — Thu, 10 Sep 2015 14:46:11 GMT

←Older revision		Revision as of 14:46, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1x6j' size='340' side='right' caption='[[1x6j]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1x6j' size='340' side='right' caption='[[1x6j]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1x6j]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Escherichia_coli Escherichia~~ coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X6J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1X6J FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1x6j]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X6J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1X6J FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1x6i\|1x6i]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1x6i\|1x6i]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ygfY ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 ~~Escherichia~~ coli])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ygfY ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1x6j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x6j OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1x6j RCSB], [http://www.ebi.ac.uk/pdbsum/1x6j PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1x6j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x6j OCA], [http://pdbe.org/1x6j PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1x6j RCSB], [http://www.ebi.ac.uk/pdbsum/1x6j PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[http://www.uniprot.org/uniprot/~~YGFY_ECOLI YGFY_ECOLI~~]] Antitoxin component of a toxin-antitoxin (TA) module. When coexpressed with cognate toxin CptA, the antitoxin neutralizes CptA's toxicity. Has been suggested to be a transcriptional regulator.<ref>PMID:22239607</ref>	+	[[http://www.uniprot.org/uniprot/CPTB_ECOLI CPTB_ECOLI]] Antitoxin component of a toxin-antitoxin (TA) module. When coexpressed with cognate toxin CptA, the antitoxin neutralizes CptA's toxicity. Has been suggested to be a transcriptional regulator.<ref>PMID:22239607</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Escherichia~~ coli]]	+	[[Category: Bacillus coli migula 1895]]
	[[Category: Demirkan, E Sarikaya]]		[[Category: Demirkan, E Sarikaya]]
	[[Category: Doseeva, V]]		[[Category: Doseeva, V]]

OCA at 01:42, 25 December 2014

OCA — Thu, 25 Dec 2014 01:42:36 GMT

←Older revision		Revision as of 01:42, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1x6j]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X6J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1X6J FirstGlance]. <br>		<table><tr><td colspan='2'>[[1x6j]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X6J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1X6J FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1x6i\|1x6i]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1x6i\|1x6i]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ygfY ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ygfY ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1x6j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x6j OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1x6j RCSB], [http://www.ebi.ac.uk/pdbsum/1x6j PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1x6j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x6j OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1x6j RCSB], [http://www.ebi.ac.uk/pdbsum/1x6j PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/YGFY_ECOLI YGFY_ECOLI]] Antitoxin component of a toxin-antitoxin (TA) module. When coexpressed with cognate toxin CptA, the antitoxin neutralizes CptA's toxicity. Has been suggested to be a transcriptional regulator.<ref>PMID:22239607</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
-	[[Category: Demirkan, E Sarikaya.]]	+	[[Category: Demirkan, E Sarikaya]]
-	[[Category: Doseeva, V.]]	+	[[Category: Doseeva, V]]
-	[[Category: Galkin, A.]]	+	[[Category: Galkin, A]]
-	[[Category: Herzberg, O.]]	+	[[Category: Herzberg, O]]
-	[[Category: Howard, A.]]	+	[[Category: Howard, A]]
-	[[Category: Krajewski, W.]]	+	[[Category: Krajewski, W]]
-	[[Category: Lim, K.]]	+	[[Category: Lim, K]]
-	[[Category: Pullalarevu, S.]]	+	[[Category: Pullalarevu, S]]
-	[[Category: S2F, Structure 2.Function Project.]]	+	[[Category: S2F, Structure 2.Function Project]]
	[[Category: Hypothetical protein]]		[[Category: Hypothetical protein]]
	[[Category: S2f]]		[[Category: S2f]]

OCA at 21:19, 29 September 2014

OCA — Mon, 29 Sep 2014 21:19:14 GMT

←Older revision		Revision as of 21:19, 29 September 2014
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-	~~[[Image:1x6j.png\|left\|200px]]~~	+	==Crystal structure of ygfY from Escherichia coli==
-		+	<StructureSection load='1x6j' size='340' side='right' caption='[[1x6j]], [[Resolution\|resolution]] 2.00Å' scene=''>
-	~~{{STRUCTURE_1x6j\| PDB=1x6j \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[1x6j]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X6J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1X6J FirstGlance]. <br>
-	===Crystal structure of ygfY from Escherichia coli===	+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1x6i\|1x6i]]</td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ygfY ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
-		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1x6j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x6j OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1x6j RCSB], [http://www.ebi.ac.uk/pdbsum/1x6j PDBsum]</span></td></tr>
-	==~~About this Structure~~==	+	<table>
-	[[1x6j]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X6J OCA].	+	== Evolutionary Conservation ==
-		+	[[Image:Consurf_key_small.gif\|200px\|right]]
-	==~~Reference~~==	+	Check<jmol>
-	<~~ref group~~="~~xtra~~">~~PMID~~:~~015593094~~</~~ref~~><~~references group~~="~~xtra~~"/>	+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/x6/1x6j_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Demirkan, E Sarikaya.]]		[[Category: Demirkan, E Sarikaya.]]

OCA: Protected "1x6j" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 12:28:44 GMT

Protected "1x6j" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:28, 5 January 2013

OCA at 12:28, 5 January 2013

OCA — Sat, 05 Jan 2013 12:28:39 GMT

←Older revision		Revision as of 12:28, 5 January 2013
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-	{{Seed}}
	[[Image:1x6j.png\|left\|200px]]		[[Image:1x6j.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1x6j", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1x6j\| PDB=1x6j \| SCENE= }}		{{STRUCTURE_1x6j\| PDB=1x6j \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~1X6J~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X6J OCA].	+	[[1x6j]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X6J OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15593094~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015593094</ref><references group="xtra"/>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Demirkan, E Sarikaya.]]		[[Category: Demirkan, E Sarikaya.]]
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	[[Category: Structure 2 function project]]		[[Category: Structure 2 function project]]
	[[Category: Transcriptional regulation]]		[[Category: Transcriptional regulation]]
		+	[[Category: Unknown function]]
	[[Category: Ygfy]]		[[Category: Ygfy]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 02:31:37 2009''

OCA at 00:31, 17 February 2009

OCA — Tue, 17 Feb 2009 00:31:39 GMT

←Older revision		Revision as of 00:31, 17 February 2009
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	==About this Structure==		==About this Structure==
-	1X6J is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X6J OCA].	+	1X6J is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X6J OCA].

	==Reference==		==Reference==
-	Crystal structure of the YgfY from Escherichia coli, a protein that may be involved in transcriptional regulation., Lim K, Doseeva V, Demirkan ES, Pullalarevu S, Krajewski W, Galkin A, Howard A, Herzberg O, Proteins. 2005 Feb 15;58(3):759-63. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/15593094 15593094]~~	+	<ref group="xtra">PMID:15593094</ref><references group="xtra"/>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
-	[[Category: Single protein]]
	[[Category: Demirkan, E Sarikaya.]]		[[Category: Demirkan, E Sarikaya.]]
	[[Category: Doseeva, V.]]		[[Category: Doseeva, V.]]
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	[[Category: Ygfy]]		[[Category: Ygfy]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Jul 28 06~~:13:~~28 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 02:31:37 2009''