1x6r - Revision history

OCA at 06:41, 23 August 2023

OCA — Wed, 23 Aug 2023 06:41:57 GMT

←Older revision		Revision as of 06:41, 23 August 2023
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	<StructureSection load='1x6r' size='340' side='right'caption='[[1x6r]], [[Resolution\|resolution]] 1.82Å' scene=''>		<StructureSection load='1x6r' size='340' side='right'caption='[[1x6r]], [[Resolution\|resolution]] 1.82Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1x6r]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X6R OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1X6R FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1x6r]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X6R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1X6R FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style='overflow: auto; max-height: 3em;'>[[1dz0\|1dz0]], [[1x6p\|1x6p]], [[1x6q\|1x6q]], [[1x6x\|1x6x]], [[1x6y\|1x6y]], [[1x6z\|1x6z]]</div></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.82Å</td></tr>
-	~~<tr~~ id~~='gene'><td class~~="~~sblockLbl~~">~~<b>~~[[~~Gene~~\|~~Gene:~~]]~~</b></td><td class="sblockDat">pilA, fimA ([http://www~~.~~ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info~~&~~srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1x6r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x6r OCA], [https://pdbe.org/1x6r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1x6r RCSB], [https://www.ebi.ac.uk/pdbsum/1x6r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1x6r ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1x6r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x6r OCA], [~~http~~://pdbe.org/1x6r PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1x6r RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1x6r PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1x6r ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/FMPA_PSEAI FMPA_PSEAI]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Dunlop, K V~~]]	+	[[Category: Pseudomonas aeruginosa]]
-	[[Category: ~~Hazes, B~~]]	+	[[Category: Dunlop KV]]
-	[[Category: ~~Irvin, R T~~]]	+	[[Category: Hazes B]]
-	[[Category: ~~Adhesin]]~~	+	[[Category: Irvin RT]]
-	~~[[Category: Lectin]]~~	+
-	~~[[Category: Structural protein]]~~	+
-	~~[[Category: Type iv pilin~~]]	+

OCA at 09:44, 6 January 2021

OCA — Wed, 06 Jan 2021 09:44:29 GMT

←Older revision		Revision as of 09:44, 6 January 2021
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	==Structure 5: room temperature crystal structure of the truncated pak pilin from Pseudomonas aeruginosa at 1.80A resolution==		==Structure 5: room temperature crystal structure of the truncated pak pilin from Pseudomonas aeruginosa at 1.80A resolution==
-	<StructureSection load='1x6r' size='340' side='right' caption='[[1x6r]], [[Resolution\|resolution]] 1.82Å' scene=''>	+	<StructureSection load='1x6r' size='340' side='right'caption='[[1x6r]], [[Resolution\|resolution]] 1.82Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1x6r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X6R OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1X6R FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1x6r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X6R OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1X6R FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1dz0\|1dz0]], [[1x6p\|1x6p]], [[1x6q\|1x6q]], [[1x6x\|1x6x]], [[1x6y\|1x6y]], [[1x6z\|1x6z]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1dz0\|1dz0]], [[1x6p\|1x6p]], [[1x6q\|1x6q]], [[1x6x\|1x6x]], [[1x6y\|1x6y]], [[1x6z\|1x6z]]</div></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pilA, fimA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pilA, fimA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1x6r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x6r OCA], [http://pdbe.org/1x6r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1x6r RCSB], [http://www.ebi.ac.uk/pdbsum/1x6r PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1x6r ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1x6r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x6r OCA], [http://pdbe.org/1x6r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1x6r RCSB], [http://www.ebi.ac.uk/pdbsum/1x6r PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1x6r ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 29:		Line 29:

	==See Also==		==See Also==
-	*[[Pilin\|Pilin]]	+	*[[Pilin 3D structures\|Pilin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Dunlop, K V]]		[[Category: Dunlop, K V]]
	[[Category: Hazes, B]]		[[Category: Hazes, B]]

OCA at 07:02, 18 April 2018

OCA — Wed, 18 Apr 2018 07:02:25 GMT

←Older revision		Revision as of 07:02, 18 April 2018
Line 1:		Line 1:
		+
	==Structure 5: room temperature crystal structure of the truncated pak pilin from Pseudomonas aeruginosa at 1.80A resolution==		==Structure 5: room temperature crystal structure of the truncated pak pilin from Pseudomonas aeruginosa at 1.80A resolution==
	<StructureSection load='1x6r' size='340' side='right' caption='[[1x6r]], [[Resolution\|resolution]] 1.82Å' scene=''>		<StructureSection load='1x6r' size='340' side='right' caption='[[1x6r]], [[Resolution\|resolution]] 1.82Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1dz0\|1dz0]], [[1x6p\|1x6p]], [[1x6q\|1x6q]], [[1x6x\|1x6x]], [[1x6y\|1x6y]], [[1x6z\|1x6z]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1dz0\|1dz0]], [[1x6p\|1x6p]], [[1x6q\|1x6q]], [[1x6x\|1x6x]], [[1x6y\|1x6y]], [[1x6z\|1x6z]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pilA, fimA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pilA, fimA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1x6r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x6r OCA], [http://pdbe.org/1x6r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1x6r RCSB], [http://www.ebi.ac.uk/pdbsum/1x6r PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1x6r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x6r OCA], [http://pdbe.org/1x6r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1x6r RCSB], [http://www.ebi.ac.uk/pdbsum/1x6r PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1x6r ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/x6/1x6r_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/x6/1x6r_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 07:16, 8 February 2016

OCA — Mon, 08 Feb 2016 07:16:52 GMT

←Older revision		Revision as of 07:16, 8 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1x6r ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 09:10, 10 September 2015

OCA — Thu, 10 Sep 2015 09:10:37 GMT

←Older revision		Revision as of 09:10, 10 September 2015
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	<StructureSection load='1x6r' size='340' side='right' caption='[[1x6r]], [[Resolution\|resolution]] 1.82Å' scene=''>		<StructureSection load='1x6r' size='340' side='right' caption='[[1x6r]], [[Resolution\|resolution]] 1.82Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1x6r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pseudomonas_aeruginosa Pseudomonas aeruginosa~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X6R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1X6R FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1x6r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X6R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1X6R FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1dz0\|1dz0]], [[1x6p\|1x6p]], [[1x6q\|1x6q]], [[1x6x\|1x6x]], [[1x6y\|1x6y]], [[1x6z\|1x6z]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1dz0\|1dz0]], [[1x6p\|1x6p]], [[1x6q\|1x6q]], [[1x6x\|1x6x]], [[1x6y\|1x6y]], [[1x6z\|1x6z]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pilA, fimA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 ~~Pseudomonas aeruginosa~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pilA, fimA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1x6r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x6r OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1x6r RCSB], [http://www.ebi.ac.uk/pdbsum/1x6r PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1x6r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x6r OCA], [http://pdbe.org/1x6r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1x6r RCSB], [http://www.ebi.ac.uk/pdbsum/1x6r PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1x6r" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 32:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Pseudomonas aeruginosa]]
	[[Category: Dunlop, K V]]		[[Category: Dunlop, K V]]
	[[Category: Hazes, B]]		[[Category: Hazes, B]]

OCA at 13:24, 6 January 2015

OCA — Tue, 06 Jan 2015 13:24:41 GMT

←Older revision		Revision as of 13:24, 6 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1x6r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X6R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1X6R FirstGlance]. <br>		<table><tr><td colspan='2'>[[1x6r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X6R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1X6R FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1dz0\|1dz0]], [[1x6p\|1x6p]], [[1x6q\|1x6q]], [[1x6x\|1x6x]], [[1x6y\|1x6y]], [[1x6z\|1x6z]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1dz0\|1dz0]], [[1x6p\|1x6p]], [[1x6q\|1x6q]], [[1x6x\|1x6x]], [[1x6y\|1x6y]], [[1x6z\|1x6z]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pilA, fimA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 Pseudomonas aeruginosa])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pilA, fimA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 Pseudomonas aeruginosa])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1x6r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x6r OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1x6r RCSB], [http://www.ebi.ac.uk/pdbsum/1x6r PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1x6r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x6r OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1x6r RCSB], [http://www.ebi.ac.uk/pdbsum/1x6r PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Pseudomonas aeruginosa]]		[[Category: Pseudomonas aeruginosa]]
-	[[Category: Dunlop, K V.]]	+	[[Category: Dunlop, K V]]
-	[[Category: Hazes, B.]]	+	[[Category: Hazes, B]]
-	[[Category: Irvin, R T.]]	+	[[Category: Irvin, R T]]
	[[Category: Adhesin]]		[[Category: Adhesin]]
	[[Category: Lectin]]		[[Category: Lectin]]
	[[Category: Structural protein]]		[[Category: Structural protein]]
	[[Category: Type iv pilin]]		[[Category: Type iv pilin]]

OCA at 21:46, 29 September 2014

OCA — Mon, 29 Sep 2014 21:46:06 GMT

←Older revision		Revision as of 21:46, 29 September 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_1x6r\| PDB=1x6r \| SCENE= }}~~	+	==Structure 5: room temperature crystal structure of the truncated pak pilin from Pseudomonas aeruginosa at 1.80A resolution==
-	===Structure 5: room temperature crystal structure of the truncated pak pilin from Pseudomonas aeruginosa at 1.80A resolution===	+	<StructureSection load='1x6r' size='340' side='right' caption='[[1x6r]], [[Resolution\|resolution]] 1.82Å' scene=''>
-	~~{{ABSTRACT_PUBMED_15608379}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1x6r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X6R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1X6R FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1dz0\|1dz0]], [[1x6p\|1x6p]], [[1x6q\|1x6q]], [[1x6x\|1x6x]], [[1x6y\|1x6y]], [[1x6z\|1x6z]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">pilA, fimA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 Pseudomonas aeruginosa])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1x6r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x6r OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1x6r RCSB], [http://www.ebi.ac.uk/pdbsum/1x6r PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/x6/1x6r_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	High-resolution protein structures are becoming more common owing to the availability of increasingly brilliant synchrotron X-ray sources. However, to withstand the increased X-ray dose the crystals must be held at cryogenic temperatures. To compare the benefit of increased resolution with the drawback of potential temperature-induced changes, three room-temperature and three cryogenic data sets for PAK pilin have been collected at resolutions between 1.8 and 0.78 A. The results show that although the high-resolution cryogenic structures are more precise and more detailed, they also show systematic deviations from the room-temperature structures. Small but significant differences are even observed in the structural core, whilst more extensive changes occur at the protein surface. These differences can affect biological interpretations, especially because many important biological processes take place at the protein surface. Accordingly, although high-quality cryogenic synchrotron data is extremely valuable to protein crystallography, room-temperature structures are still desirable, especially if the research question involves protein features that are sensitive to temperature-induced changes.

-	~~==About this Structure==~~	+	Pros and cons of cryocrystallography: should we also collect a room-temperature data set?,Dunlop KV, Irvin RT, Hazes B Acta Crystallogr D Biol Crystallogr. 2005 Jan;61(Pt 1):80-7. Epub 2004 Dec, 17. PMID:15608379<ref>PMID:15608379</ref>
-	~~[[1x6r]] is~~ a 1 ~~chain structure with sequence from [http~~:~~//en~~.~~wikipedia~~.~~org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http~~://~~oca~~.~~weizmann~~.ac.~~il/oca-bin~~/~~ocashort?id=1X6R OCA].~~	+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

	==See Also==		==See Also==
	*[[Pilin\|Pilin]]		*[[Pilin\|Pilin]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:015608379<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Pseudomonas aeruginosa]]		[[Category: Pseudomonas aeruginosa]]
	[[Category: Dunlop, K V.]]		[[Category: Dunlop, K V.]]

OCA at 10:49, 11 March 2013

OCA — Mon, 11 Mar 2013 10:49:14 GMT

←Older revision		Revision as of 10:49, 11 March 2013
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-	[[Image:1x6r.png\|left\|200px]]
-
	{{STRUCTURE_1x6r\| PDB=1x6r \| SCENE= }}		{{STRUCTURE_1x6r\| PDB=1x6r \| SCENE= }}
-
	===Structure 5: room temperature crystal structure of the truncated pak pilin from Pseudomonas aeruginosa at 1.80A resolution===		===Structure 5: room temperature crystal structure of the truncated pak pilin from Pseudomonas aeruginosa at 1.80A resolution===
-
	{{ABSTRACT_PUBMED_15608379}}		{{ABSTRACT_PUBMED_15608379}}

OCA: Protected "1x6r" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 13:14:03 GMT

Protected "1x6r" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:14, 5 January 2013

OCA at 13:14, 5 January 2013

OCA — Sat, 05 Jan 2013 13:14:01 GMT

←Older revision		Revision as of 13:14, 5 January 2013
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-	{{Seed}}
	[[Image:1x6r.png\|left\|200px]]		[[Image:1x6r.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1x6r", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1x6r\| PDB=1x6r \| SCENE= }}		{{STRUCTURE_1x6r\| PDB=1x6r \| SCENE= }}

	===Structure 5: room temperature crystal structure of the truncated pak pilin from Pseudomonas aeruginosa at 1.80A resolution===		===Structure 5: room temperature crystal structure of the truncated pak pilin from Pseudomonas aeruginosa at 1.80A resolution===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_15608379}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 15608379 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_15608379}}		{{ABSTRACT_PUBMED_15608379}}

	==About this Structure==		==About this Structure==
-	~~1X6R~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X6R OCA].	+	[[1x6r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X6R OCA].
		+
		+	==See Also==
		+	*[[Pilin\|Pilin]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15608379~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015608379</ref><references group="xtra"/>
	[[Category: Pseudomonas aeruginosa]]		[[Category: Pseudomonas aeruginosa]]
	[[Category: Dunlop, K V.]]		[[Category: Dunlop, K V.]]
Line 30:		Line 21:
	[[Category: Adhesin]]		[[Category: Adhesin]]
	[[Category: Lectin]]		[[Category: Lectin]]
		+	[[Category: Structural protein]]
	[[Category: Type iv pilin]]		[[Category: Type iv pilin]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 20:07:10 2009''