1xho - Revision history

OCA at 14:10, 9 May 2024

OCA — Thu, 09 May 2024 14:10:41 GMT

←Older revision		Revision as of 14:10, 9 May 2024
Line 3:		Line 3:
	<StructureSection load='1xho' size='340' side='right'caption='[[1xho]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1xho' size='340' side='right'caption='[[1xho]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1xho]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_27405 Atcc 27405~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XHO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XHO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1xho]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Acetivibrio_thermocellus Acetivibrio thermocellus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XHO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XHO FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.2Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xho FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xho OCA], [https://pdbe.org/1xho PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xho RCSB], [https://www.ebi.ac.uk/pdbsum/1xho PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xho ProSAT], [https://www.topsan.org/Proteins/SECSG/1xho TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xho FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xho OCA], [https://pdbe.org/1xho PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xho RCSB], [https://www.ebi.ac.uk/pdbsum/1xho PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xho ProSAT], [https://www.topsan.org/Proteins/SECSG/1xho TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A3DDB7_ACET2 A3DDB7_ACET2] Catalyzes the Claisen rearrangement of chorismate to prephenate. Probably involved in the aromatic amino acid biosynthesis.[PIRNR:PIRNR005965]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 27:		Line 29:
	</div>		</div>
	<div class="pdbe-citations 1xho" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 1xho" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[3D structures of chorismate mutase\|3D structures of chorismate mutase]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Atcc 27405~~]]	+	[[Category: Acetivibrio thermocellus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Chang, J]]	+	[[Category: Arendall III WB]]
-	[[Category: Chang, S H]]	+	[[Category: Chang J]]
-	[[Category: Chen, L]]	+	[[Category: Chang S-H]]
-	[[Category: Florence, Q]]	+	[[Category: Chen L]]
-	[[Category: Habel~~, J E~~]]	+	[[Category: Florence Q]]
-	[[Category: Horanyi, P]]	+	[[Category: Habel JE]]
-	~~[[Category: III, W B.Arendall~~]]	+	[[Category: Horanyi P]]
-	[[Category: Kataeva, I]]	+	[[Category: Kataeva I]]
-	[[Category: Lee, D]]	+	[[Category: Lee D]]
-	[[Category: Lin, D]]	+	[[Category: Lin D]]
-	[[Category: Liu, Z J]]	+	[[Category: Liu Z-J]]
-	[[Category: Ljungdahl, L]]	+	[[Category: Ljungdahl L]]
-	[[Category: Nguyen, J]]	+	[[Category: Nguyen J]]
-	[[Category: Praissman, J]]	+	[[Category: Praissman J]]
-	[[Category: Richardson~~, D C~~]]	+	[[Category: Richardson DC]]
-	[[Category: Richardson~~, J S~~]]	+	[[Category: Richardson JS]]
-	[[Category: Rose~~, J P]]~~	+	[[Category: Rose JP]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Tempel W]]
-	[[Category: Tempel, W]]	+	[[Category: Wang B-C]]
-	[[Category: Wang, B C]]	+	[[Category: Xu H]]
-	[[Category: Xu, H]]	+	[[Category: Yang H]]
-	[[Category: Yang, H]]	+	[[Category: Zhang H]]
-	[[Category: Zhang, H]]	+	[[Category: Zhao M]]
-	[[Category: Zhao, M]]	+	[[Category: Zhou W]]
-	[[Category: Zhou, W]]	+
-	~~[[Category: Chorismate mutase]]~~	+
-	~~[[Category: Clostridium thermocellum]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Secsg]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 09:05, 21 April 2021

OCA — Wed, 21 Apr 2021 09:05:36 GMT

←Older revision		Revision as of 09:05, 21 April 2021
Line 3:		Line 3:
	<StructureSection load='1xho' size='340' side='right'caption='[[1xho]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1xho' size='340' side='right'caption='[[1xho]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1xho]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_27405 Atcc 27405]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XHO OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1XHO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1xho]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_27405 Atcc 27405]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XHO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XHO FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1xho FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xho OCA], [~~http~~://pdbe.org/1xho PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1xho RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1xho PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1xho ProSAT], [~~http~~://www.topsan.org/Proteins/SECSG/1xho TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xho FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xho OCA], [https://pdbe.org/1xho PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xho RCSB], [https://www.ebi.ac.uk/pdbsum/1xho PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xho ProSAT], [https://www.topsan.org/Proteins/SECSG/1xho TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 13:30, 17 July 2019

OCA — Wed, 17 Jul 2019 13:30:54 GMT

←Older revision		Revision as of 13:30, 17 July 2019
Line 1:		Line 1:

	==Chorismate mutase from Clostridium thermocellum Cth-682==		==Chorismate mutase from Clostridium thermocellum Cth-682==
-	<StructureSection load='1xho' size='340' side='right' caption='[[1xho]], [[Resolution\|resolution]] 2.20Å' scene=''>	+	<StructureSection load='1xho' size='340' side='right'caption='[[1xho]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1xho]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_27405 Atcc 27405]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XHO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XHO FirstGlance]. <br>		<table><tr><td colspan='2'>[[1xho]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_27405 Atcc 27405]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XHO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XHO FirstGlance]. <br>
Line 12:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xh/1xho_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xh/1xho_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 32:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Atcc 27405]]		[[Category: Atcc 27405]]
		+	[[Category: Large Structures]]
	[[Category: Chang, J]]		[[Category: Chang, J]]
	[[Category: Chang, S H]]		[[Category: Chang, S H]]

OCA at 09:29, 12 October 2017

OCA — Thu, 12 Oct 2017 09:29:15 GMT

←Older revision		Revision as of 09:29, 12 October 2017
Line 1:		Line 1:
		+
	==Chorismate mutase from Clostridium thermocellum Cth-682==		==Chorismate mutase from Clostridium thermocellum Cth-682==
	<StructureSection load='1xho' size='340' side='right' caption='[[1xho]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1xho' size='340' side='right' caption='[[1xho]], [[Resolution\|resolution]] 2.20Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xho FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xho OCA], [http://pdbe.org/1xho PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xho RCSB], [http://www.ebi.ac.uk/pdbsum/1xho PDBsum], [http://www.topsan.org/Proteins/SECSG/1xho TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xho FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xho OCA], [http://pdbe.org/1xho PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xho RCSB], [http://www.ebi.ac.uk/pdbsum/1xho PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1xho ProSAT], [http://www.topsan.org/Proteins/SECSG/1xho TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 15:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xho ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 00:07, 12 September 2015

OCA — Sat, 12 Sep 2015 00:07:38 GMT

←Older revision		Revision as of 00:07, 12 September 2015
Line 2:		Line 2:
	<StructureSection load='1xho' size='340' side='right' caption='[[1xho]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1xho' size='340' side='right' caption='[[1xho]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1xho]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Clostridium_thermocellum Clostridium thermocellum~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XHO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XHO FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1xho]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_27405 Atcc 27405]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XHO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XHO FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xho FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xho OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xho RCSB], [http://www.ebi.ac.uk/pdbsum/1xho PDBsum], [http://www.topsan.org/Proteins/SECSG/1xho TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xho FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xho OCA], [http://pdbe.org/1xho PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xho RCSB], [http://www.ebi.ac.uk/pdbsum/1xho PDBsum], [http://www.topsan.org/Proteins/SECSG/1xho TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1xho" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Clostridium thermocellum~~]]	+	[[Category: Atcc 27405]]
	[[Category: Chang, J]]		[[Category: Chang, J]]
	[[Category: Chang, S H]]		[[Category: Chang, S H]]
Line 56:		Line 57:
	[[Category: Zhou, W]]		[[Category: Zhou, W]]
	[[Category: Chorismate mutase]]		[[Category: Chorismate mutase]]
		+	[[Category: Clostridium thermocellum]]
	[[Category: PSI, Protein structure initiative]]		[[Category: PSI, Protein structure initiative]]
	[[Category: Secsg]]		[[Category: Secsg]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 12:59, 6 January 2015

OCA — Tue, 06 Jan 2015 12:59:20 GMT

←Older revision		Revision as of 12:59, 6 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1xho]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_thermocellum Clostridium thermocellum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XHO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XHO FirstGlance]. <br>		<table><tr><td colspan='2'>[[1xho]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_thermocellum Clostridium thermocellum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XHO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XHO FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xho FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xho OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xho RCSB], [http://www.ebi.ac.uk/pdbsum/1xho PDBsum], [http://www.topsan.org/Proteins/SECSG/1xho TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xho FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xho OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xho RCSB], [http://www.ebi.ac.uk/pdbsum/1xho PDBsum], [http://www.topsan.org/Proteins/SECSG/1xho TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 30:
	</StructureSection>		</StructureSection>
	[[Category: Clostridium thermocellum]]		[[Category: Clostridium thermocellum]]
-	[[Category: Chang, J.]]	+	[[Category: Chang, J]]
-	[[Category: Chang, S H.]]	+	[[Category: Chang, S H]]
-	[[Category: Chen, L.]]	+	[[Category: Chen, L]]
-	[[Category: Florence, Q.]]	+	[[Category: Florence, Q]]
-	[[Category: Habel, J E.]]	+	[[Category: Habel, J E]]
-	[[Category: Horanyi, P.]]	+	[[Category: Horanyi, P]]
-	[[Category: III, W B.Arendall.]]	+	[[Category: III, W B.Arendall]]
-	[[Category: Kataeva, I.]]	+	[[Category: Kataeva, I]]
-	[[Category: Lee, D.]]	+	[[Category: Lee, D]]
-	[[Category: Lin, D.]]	+	[[Category: Lin, D]]
-	[[Category: Liu, Z J.]]	+	[[Category: Liu, Z J]]
-	[[Category: Ljungdahl, L.]]	+	[[Category: Ljungdahl, L]]
-	[[Category: Nguyen, J.]]	+	[[Category: Nguyen, J]]
-	[[Category: Praissman, J.]]	+	[[Category: Praissman, J]]
-	[[Category: Richardson, D C.]]	+	[[Category: Richardson, D C]]
-	[[Category: Richardson, J S.]]	+	[[Category: Richardson, J S]]
-	[[Category: Rose, J P.]]	+	[[Category: Rose, J P]]
-	[[Category: ~~SECSG, Southeast Collaboratory for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Tempel, W.]]	+	[[Category: Tempel, W]]
-	[[Category: Wang, B C.]]	+	[[Category: Wang, B C]]
-	[[Category: Xu, H.]]	+	[[Category: Xu, H]]
-	[[Category: Yang, H.]]	+	[[Category: Yang, H]]
-	[[Category: Zhang, H.]]	+	[[Category: Zhang, H]]
-	[[Category: Zhao, M.]]	+	[[Category: Zhao, M]]
-	[[Category: Zhou, W.]]	+	[[Category: Zhou, W]]
	[[Category: Chorismate mutase]]		[[Category: Chorismate mutase]]
-	[[Category: ~~Clostridium thermocellum]]~~	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category:~~ Protein structure initiative]]	+
-	~~[[Category: Psi~~]]	+
	[[Category: Secsg]]		[[Category: Secsg]]
-	[[Category: Southeast collaboratory for structural genomic]]
-	[[Category: Structural genomic]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 20:37, 29 September 2014

OCA — Mon, 29 Sep 2014 20:37:39 GMT

←Older revision		Revision as of 20:37, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1xho.~~png~~\|~~left~~\|200px]]	+	==Chorismate mutase from Clostridium thermocellum Cth-682==
		+	<StructureSection load='1xho' size='340' side='right' caption='[[1xho]], [[Resolution\|resolution]] 2.20Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1xho]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_thermocellum Clostridium thermocellum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XHO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XHO FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xho FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xho OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xho RCSB], [http://www.ebi.ac.uk/pdbsum/1xho PDBsum], [http://www.topsan.org/Proteins/SECSG/1xho TOPSAN]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xh/1xho_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Recently, the demands of high-throughput macromolecular crystallography have driven continuous improvements in phasing methods, data-collection protocols and many other technologies. Single-wavelength anomalous scattering (SAS) phasing with chromium X-ray radiation opens a new possibility for phasing a protein with data collected in-house and has led to several successful examples of de novo structure solution using only weak anomalous scatterers such as sulfur. To further reduce data-collection time and make SAS phasing more robust, it is natural to combine selenomethionine-derivatized protein (SeMet protein) with Cr Kalpha radiation to take advantage of the larger anomalous scattering signal from selenium (f'' = 2.28 e(-)) compared with sulfur (f'' = 1.14 e(-)). As reported herein, the crystal structure of a putative chorismate mutase from Clostridium thermocellum was determined using Se-SAS with Cr Kalpha radiation. Each protein molecule contains eight selenomethionine residues in 148 amino-acid residues, providing a calculated Bijvoet ratio of about 3.5% at the Cr Kalpha wavelength. A single data set to 2.2 A resolution with approximately ninefold redundancy was collected using an imaging-plate detector coupled with a Cr source. Structure solution, refinement and deposition to the Protein Data Bank were performed within 9 h of the availability of the scaled diffraction data. The procedure used here is applicable to many other proteins and promises to become a routine pathway for in-house high-throughput crystallography.

-	~~{{STRUCTURE_1xho\| PDB=1xho \| SCENE= }}~~	+	Away from the edge II: in-house Se-SAS phasing with chromium radiation.,Xu H, Yang C, Chen L, Kataeva IA, Tempel W, Lee D, Habel JE, Nguyen D, Pflugrath JW, Ferrara JD, Arendall WB 3rd, Richardson JS, Richardson DC, Liu ZJ, Newton MG, Rose JP, Wang BC Acta Crystallogr D Biol Crystallogr. 2005 Jul;61(Pt 7):960-6. Epub 2005, Jun 24. PMID:15983419<ref>PMID:15983419</ref>

-	~~===Chorismate mutase from Clostridium thermocellum Cth-682===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_15983419}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1xho]] is~~ a ~~3 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Clostridium_thermocellum Clostridium thermocellum]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1XHO OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:015983419<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Clostridium thermocellum]]		[[Category: Clostridium thermocellum]]
	[[Category: Chang, J.]]		[[Category: Chang, J.]]

OCA: Protected "1xho" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 11:24:28 GMT

Protected "1xho" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:24, 5 January 2013

OCA at 11:24, 5 January 2013

OCA — Sat, 05 Jan 2013 11:24:25 GMT

←Older revision		Revision as of 11:24, 5 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1xho.png\|left\|200px]]		[[Image:1xho.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1xho", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1xho\| PDB=1xho \| SCENE= }}		{{STRUCTURE_1xho\| PDB=1xho \| SCENE= }}

	===Chorismate mutase from Clostridium thermocellum Cth-682===		===Chorismate mutase from Clostridium thermocellum Cth-682===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_15983419}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 15983419 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_15983419}}		{{ABSTRACT_PUBMED_15983419}}

	==About this Structure==		==About this Structure==
-	~~1XHO~~ is a 3 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Clostridium_thermocellum Clostridium thermocellum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XHO OCA].	+	[[1xho]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Clostridium_thermocellum Clostridium thermocellum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XHO OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15983419~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015983419</ref><references group="xtra"/>
	[[Category: Clostridium thermocellum]]		[[Category: Clostridium thermocellum]]
	[[Category: Chang, J.]]		[[Category: Chang, J.]]
Line 56:		Line 44:
	[[Category: Secsg]]		[[Category: Secsg]]
	[[Category: Southeast collaboratory for structural genomic]]		[[Category: Southeast collaboratory for structural genomic]]
-		+	[[Category: Structural genomic]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Wed Feb 18 07~~:~~45:57 2009''~~	+	[[Category: Unknown function]]

OCA at 05:45, 18 February 2009

OCA — Wed, 18 Feb 2009 05:45:58 GMT

←Older revision		Revision as of 05:45, 18 February 2009
Line 23:		Line 23:

	==Reference==		==Reference==
-	Away from the edge II: in-house Se-SAS phasing with chromium radiation., Xu H, Yang C, Chen L, Kataeva IA, Tempel W, Lee D, Habel JE, Nguyen D, Pflugrath JW, Ferrara JD, Arendall WB 3rd, Richardson JS, Richardson DC, Liu ZJ, Newton MG, Rose JP, Wang BC, Acta Crystallogr D Biol Crystallogr. 2005 Jul;61(Pt 7):960-6. Epub 2005, Jun 24. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/15983419 15983419]~~	+	<ref group="xtra">PMID:15983419</ref><references group="xtra"/>
	[[Category: Clostridium thermocellum]]		[[Category: Clostridium thermocellum]]
	[[Category: Chang, J.]]		[[Category: Chang, J.]]
Line 57:		Line 57:
	[[Category: Southeast collaboratory for structural genomic]]		[[Category: Southeast collaboratory for structural genomic]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sun Nov 16 15~~:34:~~11 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 07:45:57 2009''