1xj6 - Revision history

OCA at 06:46, 23 August 2023

OCA — Wed, 23 Aug 2023 06:46:14 GMT

←Older revision		Revision as of 06:46, 23 August 2023
Line 3:		Line 3:
	<StructureSection load='1xj6' size='340' side='right'caption='[[1xj6]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='1xj6' size='340' side='right'caption='[[1xj6]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1xj6]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"rhizobacterium_japonicum"_kirchner_1896 "rhizobacterium~~ japonicum~~" kirchner 1896~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XJ6 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1XJ6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1xj6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bradyrhizobium_japonicum Bradyrhizobium japonicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XJ6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XJ6 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>~~, ~~<scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.9Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[1xj2\|1xj2]], [[1xj3\|1xj3]], [[1xj4\|1xj4]]~~</~~div~~><~~/td~~></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	<~~tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">fixL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=375 "Rhizobacterium japonicum" Kirchner 1896])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xj6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xj6 OCA], [https://pdbe.org/1xj6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xj6 RCSB], [https://www.ebi.ac.uk/pdbsum/1xj6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xj6 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1xj6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xj6 OCA], [~~http~~://pdbe.org/1xj6 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1xj6 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1xj6 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1xj6 ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/~~FIXL_BRAJA FIXL_BRAJA~~]~~] Putative oxygen sensor; modulates the activity of FixJ, a transcriptional activator of nitrogen fixation fixK gene. FixL probably acts as a kinase that phosphorylates FixJ.~~	+	[https://www.uniprot.org/uniprot/FIXL_BRADU FIXL_BRADU]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Rhizobacterium~~ japonicum ~~kirchner 1896~~]]	+	[[Category: Bradyrhizobium japonicum]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Key, J]]	+	[[Category: Key J]]
-	[[Category: Moffat, K]]	+	[[Category: Moffat K]]
-	~~[[Category: Heme]]~~	+
-	~~[[Category: Oxygen sensor]]~~	+
-	~~[[Category: Pas domain]]~~	+
-	~~[[Category: Signaling protein]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 10:01, 6 January 2021

OCA — Wed, 06 Jan 2021 10:01:53 GMT

←Older revision		Revision as of 10:01, 6 January 2021
Line 1:		Line 1:

	==Structure of bjFixLH in the unliganded ferrous form==		==Structure of bjFixLH in the unliganded ferrous form==
-	<StructureSection load='1xj6' size='340' side='right' caption='[[1xj6]], [[Resolution\|resolution]] 1.90Å' scene=''>	+	<StructureSection load='1xj6' size='340' side='right'caption='[[1xj6]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1xj6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"rhizobacterium_japonicum"_kirchner_1896 "rhizobacterium japonicum" kirchner 1896]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XJ6 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1XJ6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1xj6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"rhizobacterium_japonicum"_kirchner_1896 "rhizobacterium japonicum" kirchner 1896]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XJ6 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1XJ6 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1xj2\|1xj2]], [[1xj3\|1xj3]], [[1xj4\|1xj4]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1xj2\|1xj2]], [[1xj3\|1xj3]], [[1xj4\|1xj4]]</div></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">fixL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=375 "Rhizobacterium japonicum" Kirchner 1896])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">fixL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=375 "Rhizobacterium japonicum" Kirchner 1896])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1xj6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xj6 OCA], [http://pdbe.org/1xj6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xj6 RCSB], [http://www.ebi.ac.uk/pdbsum/1xj6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1xj6 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1xj6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xj6 OCA], [http://pdbe.org/1xj6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xj6 RCSB], [http://www.ebi.ac.uk/pdbsum/1xj6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1xj6 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 35:		Line 35:
	</StructureSection>		</StructureSection>
	[[Category: Rhizobacterium japonicum kirchner 1896]]		[[Category: Rhizobacterium japonicum kirchner 1896]]
		+	[[Category: Large Structures]]
	[[Category: Key, J]]		[[Category: Key, J]]
	[[Category: Moffat, K]]		[[Category: Moffat, K]]

OCA at 07:09, 18 April 2018

OCA — Wed, 18 Apr 2018 07:09:13 GMT

←Older revision		Revision as of 07:09, 18 April 2018
Line 1:		Line 1:
		+
	==Structure of bjFixLH in the unliganded ferrous form==		==Structure of bjFixLH in the unliganded ferrous form==
	<StructureSection load='1xj6' size='340' side='right' caption='[[1xj6]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='1xj6' size='340' side='right' caption='[[1xj6]], [[Resolution\|resolution]] 1.90Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1xj2\|1xj2]], [[1xj3\|1xj3]], [[1xj4\|1xj4]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1xj2\|1xj2]], [[1xj3\|1xj3]], [[1xj4\|1xj4]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">fixL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=375 "Rhizobacterium japonicum" Kirchner 1896])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">fixL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=375 "Rhizobacterium japonicum" Kirchner 1896])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xj6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xj6 OCA], [http://pdbe.org/1xj6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xj6 RCSB], [http://www.ebi.ac.uk/pdbsum/1xj6 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xj6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xj6 OCA], [http://pdbe.org/1xj6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xj6 RCSB], [http://www.ebi.ac.uk/pdbsum/1xj6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1xj6 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 14:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xj/1xj6_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xj/1xj6_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xj6 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 07:38, 11 September 2015

OCA — Fri, 11 Sep 2015 07:38:26 GMT

←Older revision		Revision as of 07:38, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1xj6' size='340' side='right' caption='[[1xj6]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='1xj6' size='340' side='right' caption='[[1xj6]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1xj6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Bradyrhizobium_japonicum Bradyrhizobium~~ japonicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XJ6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XJ6 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1xj6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"rhizobacterium_japonicum"_kirchner_1896 "rhizobacterium japonicum" kirchner 1896]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XJ6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XJ6 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1xj2\|1xj2]], [[1xj3\|1xj3]], [[1xj4\|1xj4]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1xj2\|1xj2]], [[1xj3\|1xj3]], [[1xj4\|1xj4]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">fixL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=375 ~~Bradyrhizobium~~ japonicum])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">fixL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=375 "Rhizobacterium japonicum" Kirchner 1896])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xj6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xj6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xj6 RCSB], [http://www.ebi.ac.uk/pdbsum/1xj6 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xj6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xj6 OCA], [http://pdbe.org/1xj6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xj6 RCSB], [http://www.ebi.ac.uk/pdbsum/1xj6 PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 28:		Line 28:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1xj6" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bradyrhizobium~~ japonicum]]	+	[[Category: Rhizobacterium japonicum kirchner 1896]]
	[[Category: Key, J]]		[[Category: Key, J]]
	[[Category: Moffat, K]]		[[Category: Moffat, K]]

OCA at 13:20, 25 December 2014

OCA — Thu, 25 Dec 2014 13:20:43 GMT

←Older revision		Revision as of 13:20, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1xj6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bradyrhizobium_japonicum Bradyrhizobium japonicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XJ6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XJ6 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1xj6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bradyrhizobium_japonicum Bradyrhizobium japonicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XJ6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XJ6 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1xj2\|1xj2]], [[1xj3\|1xj3]], [[1xj4\|1xj4]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1xj2\|1xj2]], [[1xj3\|1xj3]], [[1xj4\|1xj4]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">fixL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=375 Bradyrhizobium japonicum])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">fixL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=375 Bradyrhizobium japonicum])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xj6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xj6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xj6 RCSB], [http://www.ebi.ac.uk/pdbsum/1xj6 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xj6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xj6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xj6 RCSB], [http://www.ebi.ac.uk/pdbsum/1xj6 PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/FIXL_BRAJA FIXL_BRAJA]] Putative oxygen sensor; modulates the activity of FixJ, a transcriptional activator of nitrogen fixation fixK gene. FixL probably acts as a kinase that phosphorylates FixJ.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Bradyrhizobium japonicum]]		[[Category: Bradyrhizobium japonicum]]
-	[[Category: Key, J.]]	+	[[Category: Key, J]]
-	[[Category: Moffat, K.]]	+	[[Category: Moffat, K]]
	[[Category: Heme]]		[[Category: Heme]]
	[[Category: Oxygen sensor]]		[[Category: Oxygen sensor]]

OCA at 10:17, 3 October 2014

OCA — Fri, 03 Oct 2014 10:17:55 GMT

←Older revision		Revision as of 10:17, 3 October 2014
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-	~~{{STRUCTURE_1xj6~~\| ~~PDB~~=1xj6 \| ~~SCENE~~= }}	+	==Structure of bjFixLH in the unliganded ferrous form==
-	===~~Structure~~ of ~~bjFixLH in~~ the ~~unliganded ferrous form~~===	+	<StructureSection load='1xj6' size='340' side='right' caption='[[1xj6]], [[Resolution\|resolution]] 1.90Å' scene=''>
-	~~{{ABSTRACT_PUBMED_15779889}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1xj6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bradyrhizobium_japonicum Bradyrhizobium japonicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XJ6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XJ6 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1xj2\|1xj2]], [[1xj3\|1xj3]], [[1xj4\|1xj4]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">fixL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=375 Bradyrhizobium japonicum])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xj6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xj6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xj6 RCSB], [http://www.ebi.ac.uk/pdbsum/1xj6 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xj/1xj6_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Rhizobia directly regulate the expression of genes required for symbiotic nitrogen fixation in response to oxygen concentration via the sensor protein FixL. The N-terminal PAS domain of FixL contains a histidine-coordinated heme and regulates the activity of its effector domain, a C-terminal histidine kinase, in response to binding of oxygen and other ligands at the heme. To further investigate ligand-induced inhibition of FixL, we have determined the crystal structures of the heme domain in both the deoxy state and bound to carbon monoxide, a weak inhibitor of FixL kinase activity. Structures collected at room temperature are presented in each state from two crystallographic space groups at 1.8 and 2 A resolution. These structures reveal displacement of the residues of the H(beta) and I(beta) strands by Leu236 upon CO binding, and this structural change propagates more than 15 A to a region of the structure implicated in signal transduction in PAS proteins. Displacement of residues Ile215, Ile216, and Gly217 in the FG loop is also evident, accompanied by the movement of heme propionate 6 upon change in iron ligation. CO binding increases the temperature factors in the FG loop of the protein and disorders the side chain of Arg206, a conserved residue involved in the FG loop switch mechanism. We relate these results to structural changes in other PAS sensor domains and their involvement in catalytic control.

-	~~==Function==~~	+	Crystal structures of deoxy and CO-bound bjFixLH reveal details of ligand recognition and signaling.,Key J, Moffat K Biochemistry. 2005 Mar 29;44(12):4627-35. PMID:15779889<ref>PMID:15779889</ref>
-	~~[[http://www~~.~~uniprot~~.~~org/uniprot/FIXL_BRAJA FIXL_BRAJA]] Putative oxygen sensor~~; ~~modulates the activity of FixJ, a transcriptional activator of nitrogen fixation fixK gene. FixL probably acts as a kinase that phosphorylates FixJ~~.	+

-	~~==About this Structure==~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[1xj6]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Bradyrhizobium_japonicum Bradyrhizobium japonicum]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1XJ6 OCA].~~	+	</div>
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	~~<ref group="xtra">PMID:015779889</ref>~~<references ~~group="xtra"~~/><~~references~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Bradyrhizobium japonicum]]		[[Category: Bradyrhizobium japonicum]]
	[[Category: Key, J.]]		[[Category: Key, J.]]

OCA at 08:38, 23 April 2014

OCA — Wed, 23 Apr 2014 08:38:50 GMT

←Older revision		Revision as of 08:38, 23 April 2014
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-	[[Image:1xj6.png\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_1xj6", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1xj6\| PDB=1xj6 \| SCENE= }}		{{STRUCTURE_1xj6\| PDB=1xj6 \| SCENE= }}
-
	===Structure of bjFixLH in the unliganded ferrous form===		===Structure of bjFixLH in the unliganded ferrous form===
		+	{{ABSTRACT_PUBMED_15779889}}

-		+	==Function==
-	~~<!--~~	+	[[http://www.uniprot.org/uniprot/FIXL_BRAJA FIXL_BRAJA]] Putative oxygen sensor; modulates the activity of FixJ, a transcriptional activator of nitrogen fixation fixK gene. FixL probably acts as a kinase that phosphorylates FixJ.
-	~~The line below this paragraph, {{ABSTRACT_PUBMED_15779889}}, adds the Publication Abstract to the page~~	+
-	~~(as it appears on PubMed at~~ http://www.~~pubmed~~.~~gov)~~, ~~where 15779889 is the PubMed ID number~~.	+
-	~~-->~~	+
-	~~{{ABSTRACT_PUBMED_15779889}}~~	+

	==About this Structure==		==About this Structure==
Line 22:		Line 10:

	==Reference==		==Reference==
-	<ref group="xtra">PMID:015779889</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015779889</ref><references group="xtra"/><references/>
	[[Category: Bradyrhizobium japonicum]]		[[Category: Bradyrhizobium japonicum]]
	[[Category: Key, J.]]		[[Category: Key, J.]]

OCA: Protected "1xj6" [edit=sysop:move=sysop]

OCA — Wed, 16 Nov 2011 10:10:41 GMT

Protected "1xj6" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:10, 16 November 2011

OCA at 10:10, 16 November 2011

OCA — Wed, 16 Nov 2011 10:10:39 GMT

←Older revision		Revision as of 10:10, 16 November 2011
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-	{{Seed}}
	[[Image:1xj6.png\|left\|200px]]		[[Image:1xj6.png\|left\|200px]]

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	==About this Structure==		==About this Structure==
-	~~1XJ6~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Bradyrhizobium_japonicum Bradyrhizobium japonicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XJ6 OCA].	+	[[1xj6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bradyrhizobium_japonicum Bradyrhizobium japonicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XJ6 OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15779889~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015779889</ref><references group="xtra"/>
	[[Category: Bradyrhizobium japonicum]]		[[Category: Bradyrhizobium japonicum]]
	[[Category: Key, J.]]		[[Category: Key, J.]]
Line 30:		Line 29:
	[[Category: Oxygen sensor]]		[[Category: Oxygen sensor]]
	[[Category: Pas domain]]		[[Category: Pas domain]]
-		+	[[Category: Signaling protein]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Tue Feb 17 17~~:~~15:42 2009''~~	+	[[Category: Transferase]]

OCA at 15:15, 17 February 2009

OCA — Tue, 17 Feb 2009 15:15:43 GMT

←Older revision		Revision as of 15:15, 17 February 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	1XJ6 is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Bradyrhizobium_japonicum Bradyrhizobium japonicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XJ6 OCA].	+	1XJ6 is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Bradyrhizobium_japonicum Bradyrhizobium japonicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XJ6 OCA].

	==Reference==		==Reference==
-	~~Crystal structures of deoxy and CO-bound bjFixLH reveal details of ligand recognition and signaling., Key J, Moffat K, Biochemistry. 2005 Mar 29;44(12):4627-35.~~ PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/15779889 15779889]~~	+	<ref group="xtra">PMID:15779889</ref><references group="xtra"/>
	[[Category: Bradyrhizobium japonicum]]		[[Category: Bradyrhizobium japonicum]]
-	[[Category: Single protein]]
	[[Category: Key, J.]]		[[Category: Key, J.]]
	[[Category: Moffat, K.]]		[[Category: Moffat, K.]]
Line 32:		Line 31:
	[[Category: Pas domain]]		[[Category: Pas domain]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue ~~Jul 29 00~~:08:~~10 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 17:15:42 2009''