1xo3 - Revision history

OCA at 07:56, 15 May 2024

OCA — Wed, 15 May 2024 07:56:07 GMT

←Older revision		Revision as of 07:56, 15 May 2024
Line 1:		Line 1:

	==Solution Structure of Ubiquitin like protein from Mus Musculus==		==Solution Structure of Ubiquitin like protein from Mus Musculus==
-	<StructureSection load='1xo3' size='340' side='right'caption='[[1xo3~~]], [[NMR_Ensembles_of_Models \| 20 NMR models~~]]' scene=''>	+	<StructureSection load='1xo3' size='340' side='right'caption='[[1xo3]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1xo3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Lk3_transgenic_mice Lk3 transgenic mice~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XO3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XO3 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1xo3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XO3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XO3 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xo3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xo3 OCA], [https://pdbe.org/1xo3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xo3 RCSB], [https://www.ebi.ac.uk/pdbsum/1xo3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xo3 ProSAT], [https://www.topsan.org/Proteins/CESG/1xo3 TOPSAN]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xo3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xo3 OCA], [https://pdbe.org/1xo3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xo3 RCSB], [https://www.ebi.ac.uk/pdbsum/1xo3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xo3 ProSAT], [https://www.topsan.org/Proteins/CESG/1xo3 TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/URM1_MOUSE URM1_MOUSE]] Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. May also act as an ubiquitin-like protein that is covalently conjugated to other proteins; the relevance of such function is however unclear in vivo (By similarity).	+	[https://www.uniprot.org/uniprot/URM1_MOUSE URM1_MOUSE] Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. May also act as an ubiquitin-like protein that is covalently conjugated to other proteins; the relevance of such function is however unclear in vivo (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Lk3 transgenic mice~~]]	+	[[Category: Mus musculus]]
-	[[Category: Bahrami, A]]	+	[[Category: Bahrami A]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Lee MS]]
-	[[Category: Lee~~, M S~~]]	+	[[Category: Markley JL]]
-	[[Category: Markley~~, J L~~]]	+	[[Category: Singh S]]
-	[[Category: Singh, S]]	+	[[Category: Tonelli M]]
-	[[Category: Tonelli, M]]	+	[[Category: Tyler RC]]
-	[[Category: Tyler~~, R C]]~~	+
-	~~[[Category: Cesg]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 16:40, 27 October 2021

OCA — Wed, 27 Oct 2021 16:40:29 GMT

←Older revision		Revision as of 16:40, 27 October 2021
Line 3:		Line 3:
	<StructureSection load='1xo3' size='340' side='right'caption='[[1xo3]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='1xo3' size='340' side='right'caption='[[1xo3]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1xo3]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XO3 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1XO3 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1xo3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XO3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XO3 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1xo3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xo3 OCA], [~~http~~://pdbe.org/1xo3 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1xo3 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1xo3 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1xo3 ProSAT], [~~http~~://www.topsan.org/Proteins/CESG/1xo3 TOPSAN]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xo3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xo3 OCA], [https://pdbe.org/1xo3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xo3 RCSB], [https://www.ebi.ac.uk/pdbsum/1xo3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xo3 ProSAT], [https://www.topsan.org/Proteins/CESG/1xo3 TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/URM1_MOUSE URM1_MOUSE]] Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. May also act as an ubiquitin-like protein that is covalently conjugated to other proteins; the relevance of such function is however unclear in vivo (By similarity).	+	[[https://www.uniprot.org/uniprot/URM1_MOUSE URM1_MOUSE]] Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. May also act as an ubiquitin-like protein that is covalently conjugated to other proteins; the relevance of such function is however unclear in vivo (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 17:24, 22 January 2020

OCA — Wed, 22 Jan 2020 17:24:51 GMT

←Older revision		Revision as of 17:24, 22 January 2020
Line 1:		Line 1:

	==Solution Structure of Ubiquitin like protein from Mus Musculus==		==Solution Structure of Ubiquitin like protein from Mus Musculus==
-	<StructureSection load='1xo3' size='340' side='right' caption='[[1xo3]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>	+	<StructureSection load='1xo3' size='340' side='right'caption='[[1xo3]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1xo3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XO3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XO3 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1xo3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XO3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XO3 FirstGlance]. <br>
Line 31:		Line 31:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Lk3 transgenic mice]]		[[Category: Lk3 transgenic mice]]
	[[Category: Bahrami, A]]		[[Category: Bahrami, A]]

OCA at 07:09, 18 April 2018

OCA — Wed, 18 Apr 2018 07:09:07 GMT

←Older revision		Revision as of 07:09, 18 April 2018
Line 1:		Line 1:
		+
	==Solution Structure of Ubiquitin like protein from Mus Musculus==		==Solution Structure of Ubiquitin like protein from Mus Musculus==
	<StructureSection load='1xo3' size='340' side='right' caption='[[1xo3]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='1xo3' size='340' side='right' caption='[[1xo3]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1xo3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XO3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XO3 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1xo3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XO3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XO3 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xo3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xo3 OCA], [http://pdbe.org/1xo3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xo3 RCSB], [http://www.ebi.ac.uk/pdbsum/1xo3 PDBsum], [http://www.topsan.org/Proteins/CESG/1xo3 TOPSAN]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xo3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xo3 OCA], [http://pdbe.org/1xo3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xo3 RCSB], [http://www.ebi.ac.uk/pdbsum/1xo3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1xo3 ProSAT], [http://www.topsan.org/Proteins/CESG/1xo3 TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xo/1xo3_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xo/1xo3_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xo3 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 13:40, 11 September 2015

OCA — Fri, 11 Sep 2015 13:40:50 GMT

←Older revision		Revision as of 13:40, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1xo3' size='340' side='right' caption='[[1xo3]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='1xo3' size='340' side='right' caption='[[1xo3]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1xo3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Mus_musculus Mus musculus~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XO3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XO3 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1xo3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XO3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XO3 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xo3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xo3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xo3 RCSB], [http://www.ebi.ac.uk/pdbsum/1xo3 PDBsum], [http://www.topsan.org/Proteins/CESG/1xo3 TOPSAN]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xo3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xo3 OCA], [http://pdbe.org/1xo3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xo3 RCSB], [http://www.ebi.ac.uk/pdbsum/1xo3 PDBsum], [http://www.topsan.org/Proteins/CESG/1xo3 TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1xo3" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Mus musculus~~]]	+	[[Category: Lk3 transgenic mice]]
	[[Category: Bahrami, A]]		[[Category: Bahrami, A]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

OCA at 17:12, 25 December 2014

OCA — Thu, 25 Dec 2014 17:12:46 GMT

←Older revision		Revision as of 17:12, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1xo3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XO3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XO3 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1xo3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XO3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XO3 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xo3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xo3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xo3 RCSB], [http://www.ebi.ac.uk/pdbsum/1xo3 PDBsum], [http://www.topsan.org/Proteins/CESG/1xo3 TOPSAN]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xo3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xo3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xo3 RCSB], [http://www.ebi.ac.uk/pdbsum/1xo3 PDBsum], [http://www.topsan.org/Proteins/CESG/1xo3 TOPSAN]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/URM1_MOUSE URM1_MOUSE]] Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by thiocarboxylated (-COSH) at its C-terminus by MOCS3. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. May also act as an ubiquitin-like protein that is covalently conjugated to other proteins; the relevance of such function is however unclear in vivo (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 28:		Line 30:
	</StructureSection>		</StructureSection>
	[[Category: Mus musculus]]		[[Category: Mus musculus]]
-	[[Category: Bahrami, A~~.]]~~	+	[[Category: Bahrami, A]]
-	~~[[Category: CESG, Center for Eukaryotic Structural Genomics.]]~~	+
-	~~[[Category: Lee, M S.]]~~	+
-	~~[[Category: Markley, J L.]]~~	+
-	~~[[Category: Singh, S.]]~~	+
-	~~[[Category: Tonelli, M.]]~~	+
-	~~[[Category: Tyler, R C.]]~~	+
-	~~[[Category: Center for eukaryotic structural genomic]]~~	+
-	~~[[Category: Cesg]]~~	+
-	~~[[Category: Protein structure initiative]]~~	+
-	~~[[Category: Psi~~]]	+
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
		+	[[Category: Lee, M S]]
		+	[[Category: Markley, J L]]
		+	[[Category: Singh, S]]
		+	[[Category: Tonelli, M]]
		+	[[Category: Tyler, R C]]
		+	[[Category: Cesg]]
		+	[[Category: PSI, Protein structure initiative]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 20:25, 29 September 2014

OCA — Mon, 29 Sep 2014 20:25:02 GMT

←Older revision		Revision as of 20:25, 29 September 2014
Line 1:		Line 1:
-	[[~~Image~~:1xo3.~~png\|left~~\|200px]]	+	==Solution Structure of Ubiquitin like protein from Mus Musculus==
		+	<StructureSection load='1xo3' size='340' side='right' caption='[[1xo3]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1xo3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XO3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XO3 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xo3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xo3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xo3 RCSB], [http://www.ebi.ac.uk/pdbsum/1xo3 PDBsum], [http://www.topsan.org/Proteins/CESG/1xo3 TOPSAN]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xo/1xo3_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	We have used NMR spectroscopy to determine the solution structure of protein AAH26994.1 from Mus musculus and propose that it represents the first three-dimensional structure of a ubiquitin-related modifier 1 (Urm1) protein. Amino acid sequence comparisons indicate that AAH26994.1 belongs to the Urm1 family of ubiquitin-like modifier proteins. The best characterized member of this family has been shown to be involved in nutrient sensing, invasive growth, and budding in yeast. Proteins in this family have only a weak sequence similarity to ubiquitin, and the structure of AAH26994.1 showed a much closer resemblance to MoaD subunits of molybdopterin synthases (known structures are of three bacterial MoaD proteins with 14%-26% sequence identity to AAH26994.1). The structures of AAH26994.1 and the MoaD proteins each contain the signature ubiquitin secondary structure fold, but all differ from ubiquitin largely in regions outside of this fold. This structural similarity bolsters the hypothesis that ubiquitin and ubiquitin-related proteins evolved from a protein-based sulfide donor system of the molybdopterin synthase type.

-	~~{{STRUCTURE_1xo3\| PDB=1xo3 \| SCENE= }}~~	+	Three-dimensional structure of the AAH26994.1 protein from Mus musculus, a putative eukaryotic Urm1.,Singh S, Tonelli M, Tyler RC, Bahrami A, Lee MS, Markley JL Protein Sci. 2005 Aug;14(8):2095-102. PMID:16046629<ref>PMID:16046629</ref>

-	~~===Solution Structure~~ of ~~Ubiquitin like protein from Mus Musculus===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_16046629}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1xo3]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Mus_musculus Mus musculus]~~. ~~Full experimental information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1XO3 OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:016046629<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Mus musculus]]		[[Category: Mus musculus]]
	[[Category: Bahrami, A.]]		[[Category: Bahrami, A.]]

OCA: Protected "1xo3" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 11:06:40 GMT

Protected "1xo3" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:06, 5 January 2013

OCA at 11:06, 5 January 2013

OCA — Sat, 05 Jan 2013 11:06:37 GMT

←Older revision		Revision as of 11:06, 5 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1xo3.png\|left\|200px]]		[[Image:1xo3.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1xo3", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1xo3\| PDB=1xo3 \| SCENE= }}		{{STRUCTURE_1xo3\| PDB=1xo3 \| SCENE= }}

	===Solution Structure of Ubiquitin like protein from Mus Musculus===		===Solution Structure of Ubiquitin like protein from Mus Musculus===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_16046629}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 16046629 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_16046629}}		{{ABSTRACT_PUBMED_16046629}}

	==About this Structure==		==About this Structure==
-	~~1XO3~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XO3 OCA].	+	[[1xo3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XO3 OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~16046629~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:016046629</ref><references group="xtra"/>
	[[Category: Mus musculus]]		[[Category: Mus musculus]]
	[[Category: Bahrami, A.]]		[[Category: Bahrami, A.]]
Line 38:		Line 26:
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Unknown function]]		[[Category: Unknown function]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 23:51:18 2009''

OCA at 21:51, 17 February 2009

OCA — Tue, 17 Feb 2009 21:51:20 GMT

←Older revision		Revision as of 21:51, 17 February 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	1XO3 is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XO3 OCA].	+	1XO3 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XO3 OCA].

	==Reference==		==Reference==
-	~~Three-dimensional structure of the AAH26994.1 protein from Mus musculus, a putative eukaryotic Urm1., Singh S, Tonelli M, Tyler RC, Bahrami A, Lee MS, Markley JL, Protein Sci. 2005 Aug;14(8):2095-102.~~ PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/16046629 16046629]~~	+	<ref group="xtra">PMID:16046629</ref><references group="xtra"/>
	[[Category: Mus musculus]]		[[Category: Mus musculus]]
-	[[Category: Single protein]]
	[[Category: Bahrami, A.]]		[[Category: Bahrami, A.]]
	[[Category: CESG, Center for Eukaryotic Structural Genomics.]]		[[Category: CESG, Center for Eukaryotic Structural Genomics.]]
Line 40:		Line 39:
	[[Category: Unknown function]]		[[Category: Unknown function]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue ~~Jul 29 07~~:07:~~36 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 23:51:18 2009''