1xsv - Revision history

OCA at 07:57, 15 May 2024

OCA — Wed, 15 May 2024 07:57:53 GMT

←Older revision		Revision as of 07:57, 15 May 2024
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	<StructureSection load='1xsv' size='340' side='right'caption='[[1xsv]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='1xsv' size='340' side='right'caption='[[1xsv]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1xsv]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Staphylococcus_aureus_aureus~~ Staphylococcus ~~aureus~~ aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSV OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1XSV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1xsv]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XSV FirstGlance]. <br>
-	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=MSE:SELENOMETHIONINE'>MSE</scene~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.7Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~SAV1236 ([http~~:/~~/www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=46170 Staphylococcus aureus aureus])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1xsv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsv OCA], [~~http~~://pdbe.org/1xsv PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1xsv RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1xsv PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1xsv ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xsv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsv OCA], [https://pdbe.org/1xsv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xsv RCSB], [https://www.ebi.ac.uk/pdbsum/1xsv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xsv ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/Y1236_STAAM Y1236_STAAM]] Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein (By similarity).	+	[https://www.uniprot.org/uniprot/Y1236_STAAM Y1236_STAAM] Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Staphylococcus ~~aureus~~ aureus]]	+	[[Category: Staphylococcus aureus]]
-	[[Category: Buzadzija, K]]	+	[[Category: Buzadzija K]]
-	[[Category: Dharamsi, A]]	+	[[Category: Dharamsi A]]
-	[[Category: Fiebig~~, K M~~]]	+	[[Category: Fiebig KM]]
-	[[Category: Houston, S]]	+	[[Category: Houston S]]
-	[[Category: McDonald, M L]]	+	[[Category: McDonald M-L]]
-	[[Category: Savchenko, A]]	+	[[Category: Savchenko A]]
-	[[Category: Vedadi, M]]	+	[[Category: Vedadi M]]
-	[[Category: Virag, C]]	+	[[Category: Virag C]]
-	[[Category: Walker~~, J R~~]]	+	[[Category: Walker JR]]
-	[[Category: Xu, X]]	+	[[Category: Xu X]]
-	~~[[Category: Helix-turn-helix]]~~	+
-	~~[[Category: Putative dna-binding protein]]~~	+
-	~~[[Category: Signal recognition particle]]~~	+
-	~~[[Category: Unknown function]]~~	+
-	~~[[Category: Upf0122~~]]	+

OCA at 10:19, 6 January 2021

OCA — Wed, 06 Jan 2021 10:19:00 GMT

←Older revision		Revision as of 10:19, 6 January 2021
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	==X-ray crystal structure of conserved hypothetical UPF0122 protein SAV1236 from Staphylococcus aureus subsp. aureus Mu50==		==X-ray crystal structure of conserved hypothetical UPF0122 protein SAV1236 from Staphylococcus aureus subsp. aureus Mu50==
-	<StructureSection load='1xsv' size='340' side='right' caption='[[1xsv]], [[Resolution\|resolution]] 1.70Å' scene=''>	+	<StructureSection load='1xsv' size='340' side='right'caption='[[1xsv]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1xsv]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus_aureus Staphylococcus aureus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSV OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1XSV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1xsv]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus_aureus Staphylococcus aureus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSV OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1XSV FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SAV1236 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=46170 Staphylococcus aureus aureus])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SAV1236 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=46170 Staphylococcus aureus aureus])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1xsv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsv OCA], [http://pdbe.org/1xsv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xsv RCSB], [http://www.ebi.ac.uk/pdbsum/1xsv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1xsv ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1xsv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsv OCA], [http://pdbe.org/1xsv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xsv RCSB], [http://www.ebi.ac.uk/pdbsum/1xsv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1xsv ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Staphylococcus aureus aureus]]		[[Category: Staphylococcus aureus aureus]]
	[[Category: Buzadzija, K]]		[[Category: Buzadzija, K]]

OCA at 07:06, 18 April 2018

OCA — Wed, 18 Apr 2018 07:06:24 GMT

←Older revision		Revision as of 07:06, 18 April 2018
Line 1:		Line 1:
		+
	==X-ray crystal structure of conserved hypothetical UPF0122 protein SAV1236 from Staphylococcus aureus subsp. aureus Mu50==		==X-ray crystal structure of conserved hypothetical UPF0122 protein SAV1236 from Staphylococcus aureus subsp. aureus Mu50==
	<StructureSection load='1xsv' size='340' side='right' caption='[[1xsv]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='1xsv' size='340' side='right' caption='[[1xsv]], [[Resolution\|resolution]] 1.70Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SAV1236 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=46170 Staphylococcus aureus aureus])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SAV1236 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=46170 Staphylococcus aureus aureus])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xsv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsv OCA], [http://pdbe.org/1xsv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xsv RCSB], [http://www.ebi.ac.uk/pdbsum/1xsv PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xsv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsv OCA], [http://pdbe.org/1xsv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xsv RCSB], [http://www.ebi.ac.uk/pdbsum/1xsv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1xsv ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xs/1xsv_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xs/1xsv_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xsv ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 07:35, 11 September 2015

OCA — Fri, 11 Sep 2015 07:35:31 GMT

←Older revision		Revision as of 07:35, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1xsv' size='340' side='right' caption='[[1xsv]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='1xsv' size='340' side='right' caption='[[1xsv]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1xsv]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Staphylococcus_aureus_subsp._aureus~~ Staphylococcus aureus ~~subsp.~~ aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XSV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1xsv]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus_aureus Staphylococcus aureus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XSV FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SAV1236 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=46170 Staphylococcus aureus ~~subsp.~~ aureus])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SAV1236 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=46170 Staphylococcus aureus aureus])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xsv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xsv RCSB], [http://www.ebi.ac.uk/pdbsum/1xsv PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xsv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsv OCA], [http://pdbe.org/1xsv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xsv RCSB], [http://www.ebi.ac.uk/pdbsum/1xsv PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Staphylococcus aureus ~~subsp.~~ aureus]]	+	[[Category: Staphylococcus aureus aureus]]
	[[Category: Buzadzija, K]]		[[Category: Buzadzija, K]]
	[[Category: Dharamsi, A]]		[[Category: Dharamsi, A]]

OCA at 13:18, 25 December 2014

OCA — Thu, 25 Dec 2014 13:18:34 GMT

←Older revision		Revision as of 13:18, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1xsv]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus Staphylococcus aureus subsp. aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XSV FirstGlance]. <br>		<table><tr><td colspan='2'>[[1xsv]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus Staphylococcus aureus subsp. aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XSV FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SAV1236 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=46170 Staphylococcus aureus subsp. aureus])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SAV1236 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=46170 Staphylococcus aureus subsp. aureus])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xsv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xsv RCSB], [http://www.ebi.ac.uk/pdbsum/1xsv PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xsv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xsv RCSB], [http://www.ebi.ac.uk/pdbsum/1xsv PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/Y1236_STAAM Y1236_STAAM]] Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 20:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Staphylococcus aureus subsp. aureus]]		[[Category: Staphylococcus aureus subsp. aureus]]
-	[[Category: Buzadzija, K.]]	+	[[Category: Buzadzija, K]]
-	[[Category: Dharamsi, A.]]	+	[[Category: Dharamsi, A]]
-	[[Category: Fiebig, K M.]]	+	[[Category: Fiebig, K M]]
-	[[Category: Houston, S.]]	+	[[Category: Houston, S]]
-	[[Category: McDonald, M L.]]	+	[[Category: McDonald, M L]]
-	[[Category: Savchenko, A.]]	+	[[Category: Savchenko, A]]
-	[[Category: Vedadi, M.]]	+	[[Category: Vedadi, M]]
-	[[Category: Virag, C.]]	+	[[Category: Virag, C]]
-	[[Category: Walker, J R.]]	+	[[Category: Walker, J R]]
-	[[Category: Xu, X.]]	+	[[Category: Xu, X]]
	[[Category: Helix-turn-helix]]		[[Category: Helix-turn-helix]]
	[[Category: Putative dna-binding protein]]		[[Category: Putative dna-binding protein]]

OCA at 20:23, 29 September 2014

OCA — Mon, 29 Sep 2014 20:23:28 GMT

←Older revision		Revision as of 20:23, 29 September 2014
Line 1:		Line 1:
-	~~[[Image:1xsv.png\|left\|200px]]~~	+	==X-ray crystal structure of conserved hypothetical UPF0122 protein SAV1236 from Staphylococcus aureus subsp. aureus Mu50==
-		+	<StructureSection load='1xsv' size='340' side='right' caption='[[1xsv]], [[Resolution\|resolution]] 1.70Å' scene=''>
-	~~{{STRUCTURE_1xsv\| PDB=1xsv \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[1xsv]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus Staphylococcus aureus subsp. aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XSV FirstGlance]. <br>
-	===X-ray crystal structure of conserved hypothetical UPF0122 protein SAV1236 from Staphylococcus aureus subsp. aureus Mu50===	+	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SAV1236 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=46170 Staphylococcus aureus subsp. aureus])</td></tr>
-		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xsv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xsv RCSB], [http://www.ebi.ac.uk/pdbsum/1xsv PDBsum]</span></td></tr>
-	==~~About this Structure~~==	+	<table>
-	[[1xsv]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus Staphylococcus aureus subsp. aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSV OCA].	+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xs/1xsv_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Staphylococcus aureus subsp. aureus]]		[[Category: Staphylococcus aureus subsp. aureus]]
	[[Category: Buzadzija, K.]]		[[Category: Buzadzija, K.]]

OCA: Protected "1xsv" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 11:03:46 GMT

Protected "1xsv" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:03, 5 January 2013

OCA at 11:03, 5 January 2013

OCA — Sat, 05 Jan 2013 11:03:43 GMT

←Older revision		Revision as of 11:03, 5 January 2013
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-	{{Seed}}
	[[Image:1xsv.png\|left\|200px]]		[[Image:1xsv.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1xsv", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1xsv\| PDB=1xsv \| SCENE= }}		{{STRUCTURE_1xsv\| PDB=1xsv \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~1XSV~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus Staphylococcus aureus subsp. aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSV OCA].	+	[[1xsv]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus Staphylococcus aureus subsp. aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSV OCA].
	[[Category: Staphylococcus aureus subsp. aureus]]		[[Category: Staphylococcus aureus subsp. aureus]]
	[[Category: Buzadzija, K.]]		[[Category: Buzadzija, K.]]
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	[[Category: Putative dna-binding protein]]		[[Category: Putative dna-binding protein]]
	[[Category: Signal recognition particle]]		[[Category: Signal recognition particle]]
		+	[[Category: Unknown function]]
	[[Category: Upf0122]]		[[Category: Upf0122]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 17:13:34 2009''

OCA at 15:13, 17 February 2009

OCA — Tue, 17 Feb 2009 15:13:36 GMT

←Older revision		Revision as of 15:13, 17 February 2009
Line 1:		Line 1:
-	[[Image:1xsv.~~jpg~~\|left\|200px]]	+	{{Seed}}
		+	[[Image:1xsv.png\|left\|200px]]

	<!--		<!--
Line 9:		Line 10:
	{{STRUCTURE_1xsv\| PDB=1xsv \| SCENE= }}		{{STRUCTURE_1xsv\| PDB=1xsv \| SCENE= }}

-	~~'''~~X-ray crystal structure of conserved hypothetical UPF0122 protein SAV1236 from Staphylococcus aureus subsp. aureus Mu50~~'''~~	+	===X-ray crystal structure of conserved hypothetical UPF0122 protein SAV1236 from Staphylococcus aureus subsp. aureus Mu50===


	==About this Structure==		==About this Structure==
-	1XSV is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus Staphylococcus aureus subsp. aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSV OCA].	+	1XSV is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus Staphylococcus aureus subsp. aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSV OCA].
-	~~[[Category: Single protein]]~~	+
	[[Category: Staphylococcus aureus subsp. aureus]]		[[Category: Staphylococcus aureus subsp. aureus]]
	[[Category: Buzadzija, K.]]		[[Category: Buzadzija, K.]]
Line 30:		Line 30:
	[[Category: Signal recognition particle]]		[[Category: Signal recognition particle]]
	[[Category: Upf0122]]		[[Category: Upf0122]]
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sat May 3 15~~:28:~~17 2008~~''	+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 17:13:34 2009''

OCA at 12:28, 3 May 2008

OCA — Sat, 03 May 2008 12:28:19 GMT

←Older revision		Revision as of 12:28, 3 May 2008
Line 1:		Line 1:
	[[Image:1xsv.jpg\|left\|200px]]		[[Image:1xsv.jpg\|left\|200px]]

-	~~{{Structure~~	+	<!--
-	~~\|PDB= 1xsv \|SIZE=350\|CAPTION= <scene name='initialview01'>1xsv</scene>~~, ~~resolution 1~~.~~70Å~~	+	The line below this paragraph, containing "STRUCTURE_1xsv", creates the "Structure Box" on the page.
-	~~\|SITE=~~	+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	~~\|LIGAND= <~~scene ~~name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>~~	+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	~~\|ACTIVITY=~~	+	or leave the SCENE parameter empty for the default display.
-	~~\|GENE= SAV1236 ([http://www~~.~~ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=46170 Staphylococcus aureus subsp. aureus])~~	+	-->
-	~~\|DOMAIN=~~	+	{{STRUCTURE_1xsv\| PDB=1xsv \| SCENE= }}
-	\|~~RELATEDENTRY~~=	+
-	\|~~RESOURCES~~=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xsv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsv OCA], [http://www.ebi.ac.uk/pdbsum/1xsv PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1xsv RCSB]</span>	+
-	}}	+

	'''X-ray crystal structure of conserved hypothetical UPF0122 protein SAV1236 from Staphylococcus aureus subsp. aureus Mu50'''		'''X-ray crystal structure of conserved hypothetical UPF0122 protein SAV1236 from Staphylococcus aureus subsp. aureus Mu50'''
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	[[Category: Walker, J R.]]		[[Category: Walker, J R.]]
	[[Category: Xu, X.]]		[[Category: Xu, X.]]
-	[[Category: ~~helix~~-turn-helix]]	+	[[Category: Helix-turn-helix]]
-	[[Category: ~~putative~~ dna-binding protein]]	+	[[Category: Putative dna-binding protein]]
-	[[Category: ~~signal~~ recognition particle]]	+	[[Category: Signal recognition particle]]
-	[[Category: ~~upf0122~~]]	+	[[Category: Upf0122]]
-		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 15:28:17 2008''
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Mar 31 00~~:54:12 2008''	+