1xsx - Revision history

OCA at 07:57, 15 May 2024

OCA — Wed, 15 May 2024 07:57:55 GMT

←Older revision		Revision as of 07:57, 15 May 2024
Line 1:		Line 1:

	==NMR Structure of Sso10a, a Hyperthermophile DNA-binding Protein with an Extended Anti-parallel Coiled Coil==		==NMR Structure of Sso10a, a Hyperthermophile DNA-binding Protein with an Extended Anti-parallel Coiled Coil==
-	<StructureSection load='1xsx' size='340' side='right'caption='[[1xsx~~]], [[NMR_Ensembles_of_Models \| 11 NMR models~~]]' scene=''>	+	<StructureSection load='1xsx' size='340' side='right'caption='[[1xsx]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1xsx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_35091 Atcc 35091~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XSX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1xsx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharolobus_solfataricus Saccharolobus solfataricus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XSX FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>sso10a ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~2287 ATCC 35091])~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsx OCA], [https://pdbe.org/1xsx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xsx RCSB], [https://www.ebi.ac.uk/pdbsum/1xsx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xsx ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsx OCA], [https://pdbe.org/1xsx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xsx RCSB], [https://www.ebi.ac.uk/pdbsum/1xsx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xsx ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q5W1E8_SACSO Q5W1E8_SACSO]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 32:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 35091]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Clark, A T~~]]	+	[[Category: Saccharolobus solfataricus]]
-	[[Category: ~~Edmondson, S P~~]]	+	[[Category: Clark AT]]
-	[[Category: ~~Kahsai, M A~~]]	+	[[Category: Edmondson SP]]
-	[[Category: ~~Shriver, J W~~]]	+	[[Category: Kahsai MA]]
-	[[Category: ~~Vogler, B~~]]	+	[[Category: Shriver JW]]
-	[[Category: ~~Anti-parallel coiled coil dimer]]~~	+	[[Category: Vogler B]]
-	~~[[Category: Dna binding protein]]~~	+
-	~~[[Category: Hyperthermophile dna-binding protein]]~~	+
-	~~[[Category: Winged helix-turn-helix~~]]	+

OCA at 07:09, 2 March 2022

OCA — Wed, 02 Mar 2022 07:09:37 GMT

←Older revision		Revision as of 07:09, 2 March 2022
Line 3:		Line 3:
	<StructureSection load='1xsx' size='340' side='right'caption='[[1xsx]], [[NMR_Ensembles_of_Models \| 11 NMR models]]' scene=''>		<StructureSection load='1xsx' size='340' side='right'caption='[[1xsx]], [[NMR_Ensembles_of_Models \| 11 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1xsx]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~'saccharolobus_solfataricus' 'saccharolobus solfataricus'~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSX OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1XSX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1xsx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_35091 Atcc 35091]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XSX FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">sso10a ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2287 ~~'Saccharolobus solfataricus'~~])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">sso10a ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2287 ATCC 35091])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1xsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsx OCA], [~~http~~://pdbe.org/1xsx PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1xsx RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1xsx PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1xsx ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsx OCA], [https://pdbe.org/1xsx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xsx RCSB], [https://www.ebi.ac.uk/pdbsum/1xsx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xsx ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 30:		Line 30:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Saccharolobus solfataricus~~]]	+	[[Category: Atcc 35091]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Clark, A T]]		[[Category: Clark, A T]]

OCA at 10:19, 6 January 2021

OCA — Wed, 06 Jan 2021 10:19:10 GMT

←Older revision		Revision as of 10:19, 6 January 2021
Line 1:		Line 1:

	==NMR Structure of Sso10a, a Hyperthermophile DNA-binding Protein with an Extended Anti-parallel Coiled Coil==		==NMR Structure of Sso10a, a Hyperthermophile DNA-binding Protein with an Extended Anti-parallel Coiled Coil==
-	<StructureSection load='1xsx' size='340' side='right' caption='[[1xsx]], [[NMR_Ensembles_of_Models \| 11 NMR models]]' scene=''>	+	<StructureSection load='1xsx' size='340' side='right'caption='[[1xsx]], [[NMR_Ensembles_of_Models \| 11 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1xsx]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/'saccharolobus_solfataricus' 'saccharolobus solfataricus']. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSX OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1XSX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1xsx]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/'saccharolobus_solfataricus' 'saccharolobus solfataricus']. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSX OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1XSX FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">sso10a ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2287 'Saccharolobus solfataricus'])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">sso10a ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2287 'Saccharolobus solfataricus'])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1xsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsx OCA], [http://pdbe.org/1xsx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xsx RCSB], [http://www.ebi.ac.uk/pdbsum/1xsx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1xsx ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1xsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsx OCA], [http://pdbe.org/1xsx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xsx RCSB], [http://www.ebi.ac.uk/pdbsum/1xsx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1xsx ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 31:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Saccharolobus solfataricus]]		[[Category: Saccharolobus solfataricus]]
		+	[[Category: Large Structures]]
	[[Category: Clark, A T]]		[[Category: Clark, A T]]
	[[Category: Edmondson, S P]]		[[Category: Edmondson, S P]]

OCA at 07:22, 18 April 2018

OCA — Wed, 18 Apr 2018 07:22:42 GMT

←Older revision		Revision as of 07:22, 18 April 2018
Line 1:		Line 1:
		+
	==NMR Structure of Sso10a, a Hyperthermophile DNA-binding Protein with an Extended Anti-parallel Coiled Coil==		==NMR Structure of Sso10a, a Hyperthermophile DNA-binding Protein with an Extended Anti-parallel Coiled Coil==
	<StructureSection load='1xsx' size='340' side='right' caption='[[1xsx]], [[NMR_Ensembles_of_Models \| 11 NMR models]]' scene=''>		<StructureSection load='1xsx' size='340' side='right' caption='[[1xsx]], [[NMR_Ensembles_of_Models \| 11 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1xsx]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Atcc_35091 Atcc 35091~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XSX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1xsx]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/'saccharolobus_solfataricus' 'saccharolobus solfataricus']. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XSX FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">sso10a ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2287 ~~ATCC 35091~~])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">sso10a ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2287 'Saccharolobus solfataricus'])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsx OCA], [http://pdbe.org/1xsx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xsx RCSB], [http://www.ebi.ac.uk/pdbsum/1xsx PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsx OCA], [http://pdbe.org/1xsx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xsx RCSB], [http://www.ebi.ac.uk/pdbsum/1xsx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1xsx ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 10:		Line 11:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xs/1xsx_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xs/1xsx_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 29:		Line 30:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Atcc 35091~~]]	+	[[Category: Saccharolobus solfataricus]]
	[[Category: Clark, A T]]		[[Category: Clark, A T]]
	[[Category: Edmondson, S P]]		[[Category: Edmondson, S P]]

OCA at 08:09, 9 February 2016

OCA — Tue, 09 Feb 2016 08:09:28 GMT

←Older revision		Revision as of 08:09, 9 February 2016
Line 14:		Line 14:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xsx ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 20:17, 10 September 2015

OCA — Thu, 10 Sep 2015 20:17:59 GMT

←Older revision		Revision as of 20:17, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1xsx' size='340' side='right' caption='[[1xsx]], [[NMR_Ensembles_of_Models \| 11 NMR models]]' scene=''>		<StructureSection load='1xsx' size='340' side='right' caption='[[1xsx]], [[NMR_Ensembles_of_Models \| 11 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1xsx]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Sulfolobus_solfataricus Sulfolobus solfataricus~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XSX FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1xsx]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_35091 Atcc 35091]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XSX FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">sso10a ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2287 ~~Sulfolobus solfataricus~~])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">sso10a ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2287 ATCC 35091])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xsx RCSB], [http://www.ebi.ac.uk/pdbsum/1xsx PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsx OCA], [http://pdbe.org/1xsx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xsx RCSB], [http://www.ebi.ac.uk/pdbsum/1xsx PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 24:		Line 24:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1xsx" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Sulfolobus solfataricus~~]]	+	[[Category: Atcc 35091]]
	[[Category: Clark, A T]]		[[Category: Clark, A T]]
	[[Category: Edmondson, S P]]		[[Category: Edmondson, S P]]

OCA at 10:25, 8 January 2015

OCA — Thu, 08 Jan 2015 10:25:22 GMT

←Older revision		Revision as of 10:25, 8 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1xsx]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulfolobus_solfataricus Sulfolobus solfataricus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XSX FirstGlance]. <br>		<table><tr><td colspan='2'>[[1xsx]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulfolobus_solfataricus Sulfolobus solfataricus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XSX FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">sso10a ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2287 Sulfolobus solfataricus])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">sso10a ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2287 Sulfolobus solfataricus])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xsx RCSB], [http://www.ebi.ac.uk/pdbsum/1xsx PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xsx RCSB], [http://www.ebi.ac.uk/pdbsum/1xsx PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 29:
	</StructureSection>		</StructureSection>
	[[Category: Sulfolobus solfataricus]]		[[Category: Sulfolobus solfataricus]]
-	[[Category: Clark, A T.]]	+	[[Category: Clark, A T]]
-	[[Category: Edmondson, S P.]]	+	[[Category: Edmondson, S P]]
-	[[Category: Kahsai, M A.]]	+	[[Category: Kahsai, M A]]
-	[[Category: Shriver, J W.]]	+	[[Category: Shriver, J W]]
-	[[Category: Vogler, B.]]	+	[[Category: Vogler, B]]
	[[Category: Anti-parallel coiled coil dimer]]		[[Category: Anti-parallel coiled coil dimer]]
	[[Category: Dna binding protein]]		[[Category: Dna binding protein]]
	[[Category: Hyperthermophile dna-binding protein]]		[[Category: Hyperthermophile dna-binding protein]]
	[[Category: Winged helix-turn-helix]]		[[Category: Winged helix-turn-helix]]

OCA at 21:02, 29 September 2014

OCA — Mon, 29 Sep 2014 21:02:02 GMT

←Older revision		Revision as of 21:02, 29 September 2014
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-	[[~~Image~~:1xsx.~~png\|left~~\|200px]]	+	==NMR Structure of Sso10a, a Hyperthermophile DNA-binding Protein with an Extended Anti-parallel Coiled Coil==
		+	<StructureSection load='1xsx' size='340' side='right' caption='[[1xsx]], [[NMR_Ensembles_of_Models \| 11 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1xsx]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulfolobus_solfataricus Sulfolobus solfataricus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XSX FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">sso10a ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2287 Sulfolobus solfataricus])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xsx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xsx OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xsx RCSB], [http://www.ebi.ac.uk/pdbsum/1xsx PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xs/1xsx_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Sso10a is one of a number of DNA-binding proteins from the hyperthermophile Sulfolobus solfataricus that has been associated with DNA packaging and chromatin regulation. Sequence analysis indicates that it is a member of a conserved group of archaeal transcription regulators (COG3432). We have determined the solution structure of Sso10a and show that it is a homodimer of winged-helix DNA-binding domains. The dimer interface consists of an extended antiparallel coiled coil, with the globular DNA-binding domains positioned at opposite ends of a solvent-exposed coiled-coil rod. NMR structure refinement of the elongated structure benefited not only from the inclusion of residual dipolar couplings from partially aligned samples but also the influence of anisotropic rotational diffusion on heteronuclear relaxation. An analysis of backbone mobility using (15)N relaxation rates indicated that the overall tertiary and quaternary structure is largely inflexible on the nanosecond to picosecond time scale. Amide hydrogen exchange data demonstrated that the most stable region of the protein extends from the core of the winged helices into the coiled coil. The positions of the globular heads relative to the coiled coil in solution deviate only slightly from that observed in a crystal structure. The most significant difference between the solution and crystal structures occurs in the putative DNA-binding helix-turn-helix (HTH) motif. This is the region of lowest stability in solution and a point of protein-protein contact in the crystal. Alternative conformations of the HTH motif may permit adjustment of the structure for optimal DNA binding.

-	~~{{STRUCTURE_1xsx\| PDB=1xsx \| SCENE= }}~~	+	Solution structure, stability, and flexibility of Sso10a: a hyperthermophile coiled-coil DNA-binding protein.,Kahsai MA, Vogler B, Clark AT, Edmondson SP, Shriver JW Biochemistry. 2005 Mar 1;44(8):2822-32. PMID:15723526<ref>PMID:15723526</ref>

-	~~===NMR Structure of Sso10a~~, a ~~Hyperthermophile DNA-binding Protein with an Extended Anti-parallel Coiled Coil===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_15723526}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1xsx]] is a 2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Sulfolobus_solfataricus Sulfolobus solfataricus]~~. ~~Full experimental information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1XSX OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:015723526<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Sulfolobus solfataricus]]		[[Category: Sulfolobus solfataricus]]
	[[Category: Clark, A T.]]		[[Category: Clark, A T.]]

OCA: Protected "1xsx" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 12:01:44 GMT

Protected "1xsx" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:01, 5 January 2013

OCA at 12:01, 5 January 2013

OCA — Sat, 05 Jan 2013 12:01:42 GMT

←Older revision		Revision as of 12:01, 5 January 2013
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-	{{Seed}}
	[[Image:1xsx.png\|left\|200px]]		[[Image:1xsx.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1xsx", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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	{{STRUCTURE_1xsx\| PDB=1xsx \| SCENE= }}		{{STRUCTURE_1xsx\| PDB=1xsx \| SCENE= }}

	===NMR Structure of Sso10a, a Hyperthermophile DNA-binding Protein with an Extended Anti-parallel Coiled Coil===		===NMR Structure of Sso10a, a Hyperthermophile DNA-binding Protein with an Extended Anti-parallel Coiled Coil===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_15723526}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 15723526 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_15723526}}		{{ABSTRACT_PUBMED_15723526}}

	==About this Structure==		==About this Structure==
-	~~1XSX~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Sulfolobus_solfataricus Sulfolobus solfataricus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSX OCA].	+	[[1xsx]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulfolobus_solfataricus Sulfolobus solfataricus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XSX OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15723526~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015723526</ref><references group="xtra"/>
	[[Category: Sulfolobus solfataricus]]		[[Category: Sulfolobus solfataricus]]
	[[Category: Clark, A T.]]		[[Category: Clark, A T.]]
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	[[Category: Vogler, B.]]		[[Category: Vogler, B.]]
	[[Category: Anti-parallel coiled coil dimer]]		[[Category: Anti-parallel coiled coil dimer]]
		+	[[Category: Dna binding protein]]
	[[Category: Hyperthermophile dna-binding protein]]		[[Category: Hyperthermophile dna-binding protein]]
	[[Category: Winged helix-turn-helix]]		[[Category: Winged helix-turn-helix]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 08:14:34 2009''