1xwq - Revision history

OCA at 07:58, 15 May 2024

OCA — Wed, 15 May 2024 07:58:38 GMT

←Older revision		Revision as of 07:58, 15 May 2024
Line 3:		Line 3:
	<StructureSection load='1xwq' size='340' side='right'caption='[[1xwq]], [[Resolution\|resolution]] 1.88Å' scene=''>		<StructureSection load='1xwq' size='340' side='right'caption='[[1xwq]], [[Resolution\|resolution]] 1.88Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1xwq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"alteromonas_marinopraesens"_(zobell_and_upham_1944)_baumann_et_al._1972 "alteromonas marinopraesens" (zobell and upham 1944) baumann et al. 1972~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XWQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XWQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1xwq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudoalteromonas_haloplanktis Pseudoalteromonas haloplanktis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XWQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XWQ FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=XYP:BETA~~-~~D-XYLOPYRANOSE'>XYP</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.88Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max~~-~~height: 3em;~~'>~~[[1h12\|1h12]], [[1h13\|1h13]], [[1h14\|1h14]], [[1xwt\|1xwt]]~~</~~div~~><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PRD_900117:4beta-beta-xylotriose'>PRD_900117</scene>, <scene name='pdbligand=XYP:BETA-D-XYLOPYRANOSE'>XYP</scene></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks~~'>~~[https://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xwq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xwq OCA], [https://pdbe.org/1xwq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xwq RCSB], [https://www.ebi.ac.uk/pdbsum/1xwq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xwq ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xwq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xwq OCA], [https://pdbe.org/1xwq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xwq RCSB], [https://www.ebi.ac.uk/pdbsum/1xwq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xwq ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q8RJN8_PSEHA Q8RJN8_PSEHA]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Endo-1,4-beta-xylanase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Beeumen, J J.Van~~]]	+	[[Category: Pseudoalteromonas haloplanktis]]
-	[[Category: Collins, T]]	+	[[Category: Collins T]]
-	[[Category: ~~Feller, G]]~~	+	[[Category: De Vos D]]
-	~~[[Category: Gerday, C]]~~	+	[[Category: Feller G]]
-	~~[[Category: Hoyoux, A]]~~	+	[[Category: Gerday C]]
-	~~[[Category: Savvides, S N]]~~	+	[[Category: Hoyoux A]]
-	~~[[Category:~~ Vos, D De]]	+	[[Category: Savvides SN]]
-	[[Category: ~~Cold adaptation~~]]	+	[[Category: Van Beeumen JJ]]
-	[[Category: ~~Family 8~~]]	+
-	[[Category: ~~Glycosyl hydrolase~~]]	+
-	[[Category: ~~Hydrolase~~]]	+
-	[[Category: ~~Psychrophilic]]~~	+
-	~~[[Category: Temperature]]~~	+
-	~~[[Category: Xylan degradation~~]]	+

OCA at 16:20, 3 November 2021

OCA — Wed, 03 Nov 2021 16:20:55 GMT

←Older revision		Revision as of 16:20, 3 November 2021
Line 3:		Line 3:
	<StructureSection load='1xwq' size='340' side='right'caption='[[1xwq]], [[Resolution\|resolution]] 1.88Å' scene=''>		<StructureSection load='1xwq' size='340' side='right'caption='[[1xwq]], [[Resolution\|resolution]] 1.88Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1xwq]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"alteromonas_marinopraesens"_(zobell_and_upham_1944)_baumann_et_al._1972 "alteromonas marinopraesens" (zobell and upham 1944) baumann et al. 1972]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XWQ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1XWQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1xwq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"alteromonas_marinopraesens"_(zobell_and_upham_1944)_baumann_et_al._1972 "alteromonas marinopraesens" (zobell and upham 1944) baumann et al. 1972]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XWQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XWQ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=XYP:BETA-D-XYLOPYRANOSE'>XYP</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=XYP:BETA-D-XYLOPYRANOSE'>XYP</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1h12\|1h12]], [[1h13\|1h13]], [[1h14\|1h14]], [[1xwt\|1xwt]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1h12\|1h12]], [[1h13\|1h13]], [[1h14\|1h14]], [[1xwt\|1xwt]]</div></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1xwq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xwq OCA], [~~http~~://pdbe.org/1xwq PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1xwq RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1xwq PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1xwq ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xwq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xwq OCA], [https://pdbe.org/1xwq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xwq RCSB], [https://www.ebi.ac.uk/pdbsum/1xwq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xwq ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 16:38, 29 January 2020

OCA — Wed, 29 Jan 2020 16:38:46 GMT

←Older revision		Revision as of 16:38, 29 January 2020
Line 1:		Line 1:

	==Structure Of A Cold-Adapted Family 8 Xylanase==		==Structure Of A Cold-Adapted Family 8 Xylanase==
-	<StructureSection load='1xwq' size='340' side='right' caption='[[1xwq]], [[Resolution\|resolution]] 1.88Å' scene=''>	+	<StructureSection load='1xwq' size='340' side='right'caption='[[1xwq]], [[Resolution\|resolution]] 1.88Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1xwq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"alteromonas_marinopraesens"_(zobell_and_upham_1944)_baumann_et_al._1972 "alteromonas marinopraesens" (zobell and upham 1944) baumann et al. 1972]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XWQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XWQ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1xwq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"alteromonas_marinopraesens"_(zobell_and_upham_1944)_baumann_et_al._1972 "alteromonas marinopraesens" (zobell and upham 1944) baumann et al. 1972]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XWQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XWQ FirstGlance]. <br>
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Endo-1,4-beta-xylanase]]		[[Category: Endo-1,4-beta-xylanase]]
		+	[[Category: Large Structures]]
	[[Category: Beeumen, J J.Van]]		[[Category: Beeumen, J J.Van]]
	[[Category: Collins, T]]		[[Category: Collins, T]]

OCA at 06:59, 18 April 2018

OCA — Wed, 18 Apr 2018 06:59:25 GMT

←Older revision		Revision as of 06:59, 18 April 2018
Line 1:		Line 1:
		+
	==Structure Of A Cold-Adapted Family 8 Xylanase==		==Structure Of A Cold-Adapted Family 8 Xylanase==
	<StructureSection load='1xwq' size='340' side='right' caption='[[1xwq]], [[Resolution\|resolution]] 1.88Å' scene=''>		<StructureSection load='1xwq' size='340' side='right' caption='[[1xwq]], [[Resolution\|resolution]] 1.88Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1h12\|1h12]], [[1h13\|1h13]], [[1h14\|1h14]], [[1xwt\|1xwt]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1h12\|1h12]], [[1h13\|1h13]], [[1h14\|1h14]], [[1xwt\|1xwt]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xwq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xwq OCA], [http://pdbe.org/1xwq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xwq RCSB], [http://www.ebi.ac.uk/pdbsum/1xwq PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xwq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xwq OCA], [http://pdbe.org/1xwq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xwq RCSB], [http://www.ebi.ac.uk/pdbsum/1xwq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1xwq ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
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	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xw/1xwq_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xw/1xwq_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 05:36, 9 February 2016

OCA — Tue, 09 Feb 2016 05:36:08 GMT

←Older revision		Revision as of 05:36, 9 February 2016
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xwq ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 19:08, 10 September 2015

OCA — Thu, 10 Sep 2015 19:08:20 GMT

←Older revision		Revision as of 19:08, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1xwq' size='340' side='right' caption='[[1xwq]], [[Resolution\|resolution]] 1.88Å' scene=''>		<StructureSection load='1xwq' size='340' side='right' caption='[[1xwq]], [[Resolution\|resolution]] 1.88Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1xwq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pseudoalteromonas_haloplanktis Pseudoalteromonas haloplanktis~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XWQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XWQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1xwq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"alteromonas_marinopraesens"_(zobell_and_upham_1944)_baumann_et_al._1972 "alteromonas marinopraesens" (zobell and upham 1944) baumann et al. 1972]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XWQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XWQ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=XYP:BETA-D-XYLOPYRANOSE'>XYP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=XYP:BETA-D-XYLOPYRANOSE'>XYP</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1h12\|1h12]], [[1h13\|1h13]], [[1h14\|1h14]], [[1xwt\|1xwt]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1h12\|1h12]], [[1h13\|1h13]], [[1h14\|1h14]], [[1xwt\|1xwt]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xwq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xwq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xwq RCSB], [http://www.ebi.ac.uk/pdbsum/1xwq PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xwq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xwq OCA], [http://pdbe.org/1xwq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xwq RCSB], [http://www.ebi.ac.uk/pdbsum/1xwq PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1xwq" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
Line 31:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Endo-1,4-beta-xylanase]]		[[Category: Endo-1,4-beta-xylanase]]
-	[[Category: Pseudoalteromonas haloplanktis]]
	[[Category: Beeumen, J J.Van]]		[[Category: Beeumen, J J.Van]]
	[[Category: Collins, T]]		[[Category: Collins, T]]

OCA at 08:56, 8 January 2015

OCA — Thu, 08 Jan 2015 08:56:26 GMT

←Older revision		Revision as of 08:56, 8 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1xwq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudoalteromonas_haloplanktis Pseudoalteromonas haloplanktis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XWQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XWQ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1xwq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudoalteromonas_haloplanktis Pseudoalteromonas haloplanktis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XWQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XWQ FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=XYP:BETA-D-XYLOPYRANOSE'>XYP</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=XYP:BETA-D-XYLOPYRANOSE'>XYP</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1h12\|1h12]], [[1h13\|1h13]], [[1h14\|1h14]], [[1xwt\|1xwt]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1h12\|1h12]], [[1h13\|1h13]], [[1h14\|1h14]], [[1xwt\|1xwt]]</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xwq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xwq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xwq RCSB], [http://www.ebi.ac.uk/pdbsum/1xwq PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xwq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xwq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xwq RCSB], [http://www.ebi.ac.uk/pdbsum/1xwq PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 32:
	[[Category: Endo-1,4-beta-xylanase]]		[[Category: Endo-1,4-beta-xylanase]]
	[[Category: Pseudoalteromonas haloplanktis]]		[[Category: Pseudoalteromonas haloplanktis]]
-	[[Category: Beeumen, J J.Van.]]	+	[[Category: Beeumen, J J.Van]]
-	[[Category: Collins, T.]]	+	[[Category: Collins, T]]
-	[[Category: Feller, G.]]	+	[[Category: Feller, G]]
-	[[Category: Gerday, C.]]	+	[[Category: Gerday, C]]
-	[[Category: Hoyoux, A.]]	+	[[Category: Hoyoux, A]]
-	[[Category: Savvides, S N.]]	+	[[Category: Savvides, S N]]
-	[[Category: Vos, D De.]]	+	[[Category: Vos, D De]]
	[[Category: Cold adaptation]]		[[Category: Cold adaptation]]
	[[Category: Family 8]]		[[Category: Family 8]]

OCA at 20:19, 29 September 2014

OCA — Mon, 29 Sep 2014 20:19:09 GMT

←Older revision		Revision as of 20:19, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1xwq.~~png~~\|~~left~~\|200px]]	+	==Structure Of A Cold-Adapted Family 8 Xylanase==
		+	<StructureSection load='1xwq' size='340' side='right' caption='[[1xwq]], [[Resolution\|resolution]] 1.88Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1xwq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudoalteromonas_haloplanktis Pseudoalteromonas haloplanktis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XWQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XWQ FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=XYP:BETA-D-XYLOPYRANOSE'>XYP</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1h12\|1h12]], [[1h13\|1h13]], [[1h14\|1h14]], [[1xwt\|1xwt]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xwq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xwq OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xwq RCSB], [http://www.ebi.ac.uk/pdbsum/1xwq PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xw/1xwq_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Site-directed mutagenesis and a comparative characterisation of the kinetic parameters, pH dependency of activity and thermal stability of mutant and wild-type enzymes have been used in association with crystallographic analysis to delineate the functions of several active site residues in a novel glycoside hydrolase family 8 xylanase. Each of the residues investigated plays an essential role in this enzyme: E78 as the general acid, D281 as the general base and in orientating the nucleophilic water molecule, Y203 in maintaining the position of the nucleophilic water molecule and in structural integrity and D144 in sugar ring distortion and transition state stabilization. Interestingly, although crystal structure analyses and the pH-activity profiles clearly identify the functions of E78 and D281, substitution of these residues with their amide derivatives results in only a 250-fold and 700-fold reduction in their apparent k(cat) values, respectively. This, in addition to the observation that the proposed general base is not conserved in all glycoside hydrolase family 8 enzymes, indicates that the mechanistic architecture in this family of inverting enzymes is more complex than is conventionally believed and points to a diversity in the identity of the mechanistically important residues as well as in the arrangement of the intricate microenvironment of the active site among members of this family.

-	~~{{STRUCTURE_1xwq\| PDB=1xwq \| SCENE= }}~~	+	Study of the active site residues of a glycoside hydrolase family 8 xylanase.,Collins T, De Vos D, Hoyoux A, Savvides SN, Gerday C, Van Beeumen J, Feller G J Mol Biol. 2005 Nov 25;354(2):425-35. Epub 2005 Oct 10. PMID:16246370<ref>PMID:16246370</ref>

-	~~===Structure Of A Cold-Adapted Family 8 Xylanase===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_16246370}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1xwq]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Pseudoalteromonas_haloplanktis Pseudoalteromonas haloplanktis]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1XWQ OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:016246370<~~/~~ref~~><~~ref group="xtra">PMID:016605248</ref><references group="xtra"~~/>	+
	[[Category: Endo-1,4-beta-xylanase]]		[[Category: Endo-1,4-beta-xylanase]]
	[[Category: Pseudoalteromonas haloplanktis]]		[[Category: Pseudoalteromonas haloplanktis]]

OCA: Protected "1xwq" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 10:58:04 GMT

Protected "1xwq" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:58, 5 January 2013

OCA at 10:57, 5 January 2013

OCA — Sat, 05 Jan 2013 10:57:58 GMT

←Older revision		Revision as of 10:57, 5 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1xwq.png\|left\|200px]]		[[Image:1xwq.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1xwq", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1xwq\| PDB=1xwq \| SCENE= }}		{{STRUCTURE_1xwq\| PDB=1xwq \| SCENE= }}

	===Structure Of A Cold-Adapted Family 8 Xylanase===		===Structure Of A Cold-Adapted Family 8 Xylanase===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_16246370}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 16246370 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_16246370}}		{{ABSTRACT_PUBMED_16246370}}

	==About this Structure==		==About this Structure==
-	~~1XWQ~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Pseudoalteromonas_haloplanktis Pseudoalteromonas haloplanktis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XWQ OCA].	+	[[1xwq]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudoalteromonas_haloplanktis Pseudoalteromonas haloplanktis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XWQ OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~16246370~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:016246370</ref><ref group="xtra">PMID:016605248</ref><references group="xtra"/>
	[[Category: Endo-1,4-beta-xylanase]]		[[Category: Endo-1,4-beta-xylanase]]
	[[Category: Pseudoalteromonas haloplanktis]]		[[Category: Pseudoalteromonas haloplanktis]]
Line 40:		Line 28:
	[[Category: Temperature]]		[[Category: Temperature]]
	[[Category: Xylan degradation]]		[[Category: Xylan degradation]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 06:53:20 2009''