1xyf - Revision history

OCA at 06:50, 23 August 2023

OCA — Wed, 23 Aug 2023 06:50:41 GMT

←Older revision		Revision as of 06:50, 23 August 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1xyf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_olivaceoviridis Streptomyces olivaceoviridis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XYF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XYF FirstGlance]. <br>		<table><tr><td colspan='2'>[[1xyf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_olivaceoviridis Streptomyces olivaceoviridis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XYF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XYF FirstGlance]. <br>
-	</td></tr><tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"~~><span class~~=~~'plainlinks'~~>~~[https://en.wikipedia.org/wiki/Endo~~-1,~~4-beta-xylanase Endo-1,4-beta-xylanase~~]~~, with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.~~1.~~8 3.2.1.8] </span>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.9Å</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xyf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xyf OCA], [https://pdbe.org/1xyf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xyf RCSB], [https://www.ebi.ac.uk/pdbsum/1xyf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xyf ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xyf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xyf OCA], [https://pdbe.org/1xyf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xyf RCSB], [https://www.ebi.ac.uk/pdbsum/1xyf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xyf ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q7SI98_STROI Q7SI98_STROI]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Endo-1,4-beta-xylanase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Streptomyces olivaceoviridis]]		[[Category: Streptomyces olivaceoviridis]]
-	[[Category: Fujimoto, Z]]	+	[[Category: Fujimoto Z]]
-	[[Category: Kuno, A]]	+	[[Category: Kuno A]]
-	[[Category: Kusakabe, I]]	+	[[Category: Kusakabe I]]
-	[[Category: Mizuno, H]]	+	[[Category: Mizuno H]]
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Xylan degradation~~]]	+

OCA at 16:21, 3 November 2021

OCA — Wed, 03 Nov 2021 16:21:33 GMT

←Older revision		Revision as of 16:21, 3 November 2021
Line 3:		Line 3:
	<StructureSection load='1xyf' size='340' side='right'caption='[[1xyf]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='1xyf' size='340' side='right'caption='[[1xyf]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1xyf]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Streptomyces_olivaceoviridis Streptomyces olivaceoviridis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XYF OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1XYF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1xyf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_olivaceoviridis Streptomyces olivaceoviridis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XYF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XYF FirstGlance]. <br>
-	</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>	+	</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1xyf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xyf OCA], [~~http~~://pdbe.org/1xyf PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1xyf RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1xyf PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1xyf ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xyf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xyf OCA], [https://pdbe.org/1xyf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xyf RCSB], [https://www.ebi.ac.uk/pdbsum/1xyf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xyf ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 17:27, 29 January 2020

OCA — Wed, 29 Jan 2020 17:27:46 GMT

←Older revision		Revision as of 17:27, 29 January 2020
Line 1:		Line 1:

	==ENDO-1,4-BETA-XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS==		==ENDO-1,4-BETA-XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS==
-	<StructureSection load='1xyf' size='340' side='right' caption='[[1xyf]], [[Resolution\|resolution]] 1.90Å' scene=''>	+	<StructureSection load='1xyf' size='340' side='right'caption='[[1xyf]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1xyf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_olivaceoviridis Streptomyces olivaceoviridis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XYF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XYF FirstGlance]. <br>		<table><tr><td colspan='2'>[[1xyf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_olivaceoviridis Streptomyces olivaceoviridis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XYF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XYF FirstGlance]. <br>
Line 31:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Endo-1,4-beta-xylanase]]		[[Category: Endo-1,4-beta-xylanase]]
		+	[[Category: Large Structures]]
	[[Category: Streptomyces olivaceoviridis]]		[[Category: Streptomyces olivaceoviridis]]
	[[Category: Fujimoto, Z]]		[[Category: Fujimoto, Z]]

OCA at 07:39, 18 April 2018

OCA — Wed, 18 Apr 2018 07:39:33 GMT

←Older revision		Revision as of 07:39, 18 April 2018
Line 1:		Line 1:
		+
	==ENDO-1,4-BETA-XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS==		==ENDO-1,4-BETA-XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS==
	<StructureSection load='1xyf' size='340' side='right' caption='[[1xyf]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='1xyf' size='340' side='right' caption='[[1xyf]], [[Resolution\|resolution]] 1.90Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[1xyf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_olivaceoviridis Streptomyces olivaceoviridis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XYF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XYF FirstGlance]. <br>		<table><tr><td colspan='2'>[[1xyf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_olivaceoviridis Streptomyces olivaceoviridis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XYF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XYF FirstGlance]. <br>
	</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>		</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xyf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xyf OCA], [http://pdbe.org/1xyf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xyf RCSB], [http://www.ebi.ac.uk/pdbsum/1xyf PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xyf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xyf OCA], [http://pdbe.org/1xyf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xyf RCSB], [http://www.ebi.ac.uk/pdbsum/1xyf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1xyf ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 10:		Line 11:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xy/1xyf_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xy/1xyf_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 05:13, 8 February 2016

OCA — Mon, 08 Feb 2016 05:13:13 GMT

←Older revision		Revision as of 05:13, 8 February 2016
Line 14:		Line 14:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1xyf ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 08:14, 10 September 2015

OCA — Thu, 10 Sep 2015 08:14:11 GMT

←Older revision		Revision as of 08:14, 10 September 2015
Line 4:		Line 4:
	<table><tr><td colspan='2'>[[1xyf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_olivaceoviridis Streptomyces olivaceoviridis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XYF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XYF FirstGlance]. <br>		<table><tr><td colspan='2'>[[1xyf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_olivaceoviridis Streptomyces olivaceoviridis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XYF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XYF FirstGlance]. <br>
	</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>		</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xyf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xyf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xyf RCSB], [http://www.ebi.ac.uk/pdbsum/1xyf PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xyf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xyf OCA], [http://pdbe.org/1xyf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xyf RCSB], [http://www.ebi.ac.uk/pdbsum/1xyf PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 24:		Line 24:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1xyf" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 10:45, 8 January 2015

OCA — Thu, 08 Jan 2015 10:45:11 GMT

←Older revision		Revision as of 10:45, 8 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1xyf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_olivaceoviridis Streptomyces olivaceoviridis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XYF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XYF FirstGlance]. <br>		<table><tr><td colspan='2'>[[1xyf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_olivaceoviridis Streptomyces olivaceoviridis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XYF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XYF FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>	+	</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xyf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xyf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xyf RCSB], [http://www.ebi.ac.uk/pdbsum/1xyf PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xyf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xyf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xyf RCSB], [http://www.ebi.ac.uk/pdbsum/1xyf PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 30:
	[[Category: Endo-1,4-beta-xylanase]]		[[Category: Endo-1,4-beta-xylanase]]
	[[Category: Streptomyces olivaceoviridis]]		[[Category: Streptomyces olivaceoviridis]]
-	[[Category: Fujimoto, Z.]]	+	[[Category: Fujimoto, Z]]
-	[[Category: Kuno, A.]]	+	[[Category: Kuno, A]]
-	[[Category: Kusakabe, I.]]	+	[[Category: Kusakabe, I]]
-	[[Category: Mizuno, H.]]	+	[[Category: Mizuno, H]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
	[[Category: Xylan degradation]]		[[Category: Xylan degradation]]

OCA at 21:12, 29 September 2014

OCA — Mon, 29 Sep 2014 21:12:45 GMT

←Older revision		Revision as of 21:12, 29 September 2014
Line 1:		Line 1:
-	[[~~Image~~:1xyf.~~png\|left~~\|200px]]	+	==ENDO-1,4-BETA-XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS==
		+	<StructureSection load='1xyf' size='340' side='right' caption='[[1xyf]], [[Resolution\|resolution]] 1.90Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1xyf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_olivaceoviridis Streptomyces olivaceoviridis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XYF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XYF FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xyf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xyf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xyf RCSB], [http://www.ebi.ac.uk/pdbsum/1xyf PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/xy/1xyf_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Xylanases hydrolyse the beta-1,4-glycosidic bonds within the xylan backbone and belong to either family 10 or 11 of the glycoside hydrolases, on the basis of the amino acid sequence similarities of their catalytic domains. Generally, xylanases have a core catalytic domain, an N and/or C-terminal substrate-binding domain and a linker region. Until now, X-ray structural analyses of family 10 xylanases have been reported only for their catalytic domains and do not contain substrate-binding domains. We have determined the crystal structure of a family 10 xylanase containing the xylan-binding domain (XBD) from Streptomyces olivaceoviridis E-86 at 1.9 A resolution. The catalytic domain comprises a (beta/alpha)(8)-barrel topologically identical to other family 10 xylanases. XBD has three similar subdomains, as suggested from a triple-repeat sequence, which are assembled against one another around a pseudo-3-fold axis, forming a galactose-binding lectin fold similar to ricin B-chain. The Gly/Pro-rich linker region connecting the catalytic domain and XBD is not visible in the electron density map, probably because of its flexibility. The interface of the two domains in the crystal is hydrophilic, where five direct hydrogen bonds and water-mediated hydrogen bonds exist. The sugar-binding residues seen in ricin/lactose complex are spatially conserved among the three subdomains in XBD, suggesting that all of the subdomains in XBD have the capacity to bind sugars. The flexible linker region enables the two domains to move independently and may provide a triple chance of substrate capturing and catalysis. The structure reported here represents an example where the metabolic enzyme uses a ricin-type lectin motif for capturing the insoluble substrate and promoting catalysis.

-	~~{{STRUCTURE_1xyf\| PDB=1xyf \| SCENE= }}~~	+	Crystal structure of Streptomyces olivaceoviridis E-86 beta-xylanase containing xylan-binding domain.,Fujimoto Z, Kuno A, Kaneko S, Yoshida S, Kobayashi H, Kusakabe I, Mizuno H J Mol Biol. 2000 Jul 14;300(3):575-85. PMID:10884353<ref>PMID:10884353</ref>

-	~~===ENDO-1~~,~~4-BETA-XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_10884353}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1xyf]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Streptomyces_olivaceoviridis Streptomyces olivaceoviridis]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1XYF OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:010884353<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Endo-1,4-beta-xylanase]]		[[Category: Endo-1,4-beta-xylanase]]
	[[Category: Streptomyces olivaceoviridis]]		[[Category: Streptomyces olivaceoviridis]]

OCA: Protected "1xyf" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 12:18:16 GMT

Protected "1xyf" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:18, 5 January 2013

OCA at 12:18, 5 January 2013

OCA — Sat, 05 Jan 2013 12:18:13 GMT

←Older revision		Revision as of 12:18, 5 January 2013
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-	{{Seed}}
	[[Image:1xyf.png\|left\|200px]]		[[Image:1xyf.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1xyf", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
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	{{STRUCTURE_1xyf\| PDB=1xyf \| SCENE= }}		{{STRUCTURE_1xyf\| PDB=1xyf \| SCENE= }}

	===ENDO-1,4-BETA-XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS===		===ENDO-1,4-BETA-XYLANASE FROM STREPTOMYCES OLIVACEOVIRIDIS===

-		+	{{ABSTRACT_PUBMED_10884353}}
-	~~<!--~~	+
-	~~The line below this paragraph,~~ {{~~ABSTRACT_PUBMED_10571062}}, adds the Publication Abstract to the page~~	+
-	~~(as it appears on PubMed at http://www.pubmed.gov), where 10571062 is the PubMed ID number.~~	+
-	~~-->~~	+
-	~~{{ABSTRACT_PUBMED_10571062~~}}	+

	==About this Structure==		==About this Structure==
-	~~1XYF~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Streptomyces_olivaceoviridis Streptomyces olivaceoviridis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XYF OCA].	+	[[1xyf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_olivaceoviridis Streptomyces olivaceoviridis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XYF OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~10571062~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:010884353</ref><references group="xtra"/>
	[[Category: Endo-1,4-beta-xylanase]]		[[Category: Endo-1,4-beta-xylanase]]
	[[Category: Streptomyces olivaceoviridis]]		[[Category: Streptomyces olivaceoviridis]]
Line 30:		Line 18:
	[[Category: Kusakabe, I.]]		[[Category: Kusakabe, I.]]
	[[Category: Mizuno, H.]]		[[Category: Mizuno, H.]]
		+	[[Category: Hydrolase]]
	[[Category: Xylan degradation]]		[[Category: Xylan degradation]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 19:03:57 2009''