1xyi - Revision history

OCA at 10:30, 16 August 2023

OCA — Wed, 16 Aug 2023 10:30:10 GMT

←Older revision		Revision as of 10:30, 16 August 2023
Line 3:		Line 3:
	<StructureSection load='1xyi' size='340' side='right'caption='[[1xyi]], [[Resolution\|resolution]] 1.45Å' scene=''>		<StructureSection load='1xyi' size='340' side='right'caption='[[1xyi]], [[Resolution\|resolution]] 1.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1xyi]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_33909 Atcc 33909~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XYI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XYI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1xyi]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfolobus_acidocaldarius Sulfolobus acidocaldarius]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XYI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XYI FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style='overflow: auto; max-height: 3em;'>[[1azp\|1azp]]</div></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.45Å</td></tr>
-	~~<tr~~ id~~='gene'><td class~~="~~sblockLbl~~">~~<b>~~[[~~Gene~~\|~~Gene:~~]]~~</b></td><td class="sblockDat">sac7d ([https://www~~.~~ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info~~&~~srchmode=5&id=2285 ATCC 33909])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xyi OCA], [https://pdbe.org/1xyi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xyi RCSB], [https://www.ebi.ac.uk/pdbsum/1xyi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xyi ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xyi OCA], [https://pdbe.org/1xyi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xyi RCSB], [https://www.ebi.ac.uk/pdbsum/1xyi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xyi ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/~~DN71_SULAC DN71_SULAC~~]~~] Constrain~~ negative DNA supercoils~~; may~~ be involved in maintaining the integrity of ~~their~~ genome at high temperature.	+	[https://www.uniprot.org/uniprot/DN7D_SULAC DN7D_SULAC] Can constrain negative DNA supercoils. May be involved in maintaining the integrity of the genome at high temperature.[UniProtKB:P61990]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 23:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 33909]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Chen, C J]]	+	[[Category: Sulfolobus acidocaldarius]]
-	[[Category: Chen, C Y]]	+	[[Category: Chen C-J]]
-	[[Category: Chou, C C]]	+	[[Category: Chen C-Y]]
-	[[Category: Ko, T P]]	+	[[Category: Chou C-C]]
-	[[Category: Lin, T W]]	+	[[Category: Ko T-P]]
-	[[Category: Wang~~, A H.~~J]]	+	[[Category: Lin T-W]]
-	~~[[Category: Oligonucleotide binding fold]]~~	+	[[Category: Wang AH-J]]
-	~~[[Category: Protein-dna complex]]~~	+
-	~~[[Category: Structural protein-dna complex~~]]	+

OCA at 06:40, 10 November 2021

OCA — Wed, 10 Nov 2021 06:40:41 GMT

←Older revision		Revision as of 06:40, 10 November 2021
Line 3:		Line 3:
	<StructureSection load='1xyi' size='340' side='right'caption='[[1xyi]], [[Resolution\|resolution]] 1.45Å' scene=''>		<StructureSection load='1xyi' size='340' side='right'caption='[[1xyi]], [[Resolution\|resolution]] 1.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1xyi]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_33909 Atcc 33909]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XYI OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1XYI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1xyi]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_33909 Atcc 33909]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XYI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XYI FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1azp\|1azp]]</div></td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1azp\|1azp]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">sac7d ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2285 ATCC 33909])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">sac7d ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2285 ATCC 33909])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1xyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xyi OCA], [~~http~~://pdbe.org/1xyi PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1xyi RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1xyi PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1xyi ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xyi OCA], [https://pdbe.org/1xyi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xyi RCSB], [https://www.ebi.ac.uk/pdbsum/1xyi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xyi ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/DN71_SULAC DN71_SULAC]] Constrain negative DNA supercoils; may be involved in maintaining the integrity of their genome at high temperature.	+	[[https://www.uniprot.org/uniprot/DN71_SULAC DN71_SULAC]] Constrain negative DNA supercoils; may be involved in maintaining the integrity of their genome at high temperature.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 10:26, 6 January 2021

OCA — Wed, 06 Jan 2021 10:26:13 GMT

←Older revision		Revision as of 10:26, 6 January 2021
Line 1:		Line 1:

	==Hyperthermophile chromosomal protein Sac7d double mutant Val26Ala/Met29Ala in complex with DNA GCGATCGC==		==Hyperthermophile chromosomal protein Sac7d double mutant Val26Ala/Met29Ala in complex with DNA GCGATCGC==
-	<StructureSection load='1xyi' size='340' side='right' caption='[[1xyi]], [[Resolution\|resolution]] 1.45Å' scene=''>	+	<StructureSection load='1xyi' size='340' side='right'caption='[[1xyi]], [[Resolution\|resolution]] 1.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1xyi]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_33909 Atcc 33909]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XYI OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1XYI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1xyi]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_33909 Atcc 33909]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XYI OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1XYI FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1azp\|1azp]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1azp\|1azp]]</div></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">sac7d ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2285 ATCC 33909])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">sac7d ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2285 ATCC 33909])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1xyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xyi OCA], [http://pdbe.org/1xyi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xyi RCSB], [http://www.ebi.ac.uk/pdbsum/1xyi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1xyi ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1xyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xyi OCA], [http://pdbe.org/1xyi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xyi RCSB], [http://www.ebi.ac.uk/pdbsum/1xyi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1xyi ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 24:		Line 24:
	</StructureSection>		</StructureSection>
	[[Category: Atcc 33909]]		[[Category: Atcc 33909]]
		+	[[Category: Large Structures]]
	[[Category: Chen, C J]]		[[Category: Chen, C J]]
	[[Category: Chen, C Y]]		[[Category: Chen, C Y]]

OCA at 07:32, 18 April 2018

OCA — Wed, 18 Apr 2018 07:32:03 GMT

←Older revision		Revision as of 07:32, 18 April 2018
Line 1:		Line 1:
		+
	==Hyperthermophile chromosomal protein Sac7d double mutant Val26Ala/Met29Ala in complex with DNA GCGATCGC==		==Hyperthermophile chromosomal protein Sac7d double mutant Val26Ala/Met29Ala in complex with DNA GCGATCGC==
	<StructureSection load='1xyi' size='340' side='right' caption='[[1xyi]], [[Resolution\|resolution]] 1.45Å' scene=''>		<StructureSection load='1xyi' size='340' side='right' caption='[[1xyi]], [[Resolution\|resolution]] 1.45Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1azp\|1azp]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1azp\|1azp]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">sac7d ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2285 ATCC 33909])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">sac7d ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2285 ATCC 33909])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xyi OCA], [http://pdbe.org/1xyi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xyi RCSB], [http://www.ebi.ac.uk/pdbsum/1xyi PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xyi OCA], [http://pdbe.org/1xyi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xyi RCSB], [http://www.ebi.ac.uk/pdbsum/1xyi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1xyi ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 02:03, 11 September 2015

OCA — Fri, 11 Sep 2015 02:03:23 GMT

←Older revision		Revision as of 02:03, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1xyi' size='340' side='right' caption='[[1xyi]], [[Resolution\|resolution]] 1.45Å' scene=''>		<StructureSection load='1xyi' size='340' side='right' caption='[[1xyi]], [[Resolution\|resolution]] 1.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1xyi]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Sulfolobus_acidocaldarius Sulfolobus acidocaldarius~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XYI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XYI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1xyi]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_33909 Atcc 33909]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XYI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XYI FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1azp\|1azp]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1azp\|1azp]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">sac7d ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2285 ~~Sulfolobus acidocaldarius~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">sac7d ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2285 ATCC 33909])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xyi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xyi RCSB], [http://www.ebi.ac.uk/pdbsum/1xyi PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xyi OCA], [http://pdbe.org/1xyi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xyi RCSB], [http://www.ebi.ac.uk/pdbsum/1xyi PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 17:		Line 17:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1xyi" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Sulfolobus acidocaldarius~~]]	+	[[Category: Atcc 33909]]
	[[Category: Chen, C J]]		[[Category: Chen, C J]]
	[[Category: Chen, C Y]]		[[Category: Chen, C Y]]

OCA at 09:33, 25 December 2014

OCA — Thu, 25 Dec 2014 09:33:18 GMT

←Older revision		Revision as of 09:33, 25 December 2014
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xyi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xyi RCSB], [http://www.ebi.ac.uk/pdbsum/1xyi PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xyi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xyi RCSB], [http://www.ebi.ac.uk/pdbsum/1xyi PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/DN71_SULAC DN71_SULAC]] Constrain negative DNA supercoils; may be involved in maintaining the integrity of their genome at high temperature.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 05:59, 22 December 2014

OCA — Mon, 22 Dec 2014 05:59:38 GMT

←Older revision		Revision as of 05:59, 22 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1xyi]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulfolobus_acidocaldarius Sulfolobus acidocaldarius]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XYI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XYI FirstGlance]. <br>		<table><tr><td colspan='2'>[[1xyi]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulfolobus_acidocaldarius Sulfolobus acidocaldarius]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XYI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XYI FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1azp\|1azp]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1azp\|1azp]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">sac7d ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2285 Sulfolobus acidocaldarius])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">sac7d ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2285 Sulfolobus acidocaldarius])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xyi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xyi RCSB], [http://www.ebi.ac.uk/pdbsum/1xyi PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xyi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xyi RCSB], [http://www.ebi.ac.uk/pdbsum/1xyi PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 20:		Line 20:
	</StructureSection>		</StructureSection>
	[[Category: Sulfolobus acidocaldarius]]		[[Category: Sulfolobus acidocaldarius]]
-	[[Category: Chen, C J.]]	+	[[Category: Chen, C J]]
-	[[Category: Chen, C Y.]]	+	[[Category: Chen, C Y]]
-	[[Category: Chou, C C.]]	+	[[Category: Chou, C C]]
-	[[Category: Ko, T P.]]	+	[[Category: Ko, T P]]
-	[[Category: Lin, T W.]]	+	[[Category: Lin, T W]]
-	[[Category: Wang, A H.J.]]	+	[[Category: Wang, A H.J]]
	[[Category: Oligonucleotide binding fold]]		[[Category: Oligonucleotide binding fold]]
	[[Category: Protein-dna complex]]		[[Category: Protein-dna complex]]
	[[Category: Structural protein-dna complex]]		[[Category: Structural protein-dna complex]]

OCA at 07:08, 9 June 2014

OCA — Mon, 09 Jun 2014 07:08:47 GMT

←Older revision		Revision as of 07:08, 9 June 2014
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-	[[~~Image:~~1xyi.~~png~~\|~~left~~\|~~200px~~]]	+	==Hyperthermophile chromosomal protein Sac7d double mutant Val26Ala/Met29Ala in complex with DNA GCGATCGC==
		+	<StructureSection load='1xyi' size='340' side='right' caption='[[1xyi]], [[Resolution\|resolution]] 1.45Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1xyi]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulfolobus_acidocaldarius Sulfolobus acidocaldarius]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XYI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XYI FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1azp\|1azp]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">sac7d ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2285 Sulfolobus acidocaldarius])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xyi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xyi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1xyi RCSB], [http://www.ebi.ac.uk/pdbsum/1xyi PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Sac7d, a small, abundant, sequence-general DNA-binding protein from the hyperthermophilic archaeon Sulfolobus acidocaldarius, causes a single-step sharp kink in DNA (approximately 60 degrees) via the intercalation of both Val26 and Met29. These two amino acids were systematically changed in size to probe their effects on DNA kinking. Eight crystal structures of five Sac7d mutant-DNA complexes have been analyzed. The DNA-binding pattern of the V26A and M29A single mutants is similar to that of the wild-type, whereas the V26A/M29A protein binds DNA without side chain intercalation, resulting in a smaller overall bending (approximately 50 degrees). The M29F mutant inserts the Phe29 side chain orthogonally to the C2pG3 step without stacking with base pairs, inducing a sharp kink (approximately 80 degrees). In the V26F/M29F-GCGATCGC complex, Phe26 intercalates deeply into DNA bases by stacking with the G3 base, whereas Phe29 is stacked on the G15 deoxyribose, in a way similar to those used by the TATA box-binding proteins. All mutants have reduced DNA-stabilizing ability, as indicated by their lower T m values. The DNA kink patterns caused by different combinations of hydrophobic side chains may be relevant in understanding the manner by which other minor groove-binding proteins interact with DNA.

-	~~{{STRUCTURE_1xyi\| PDB=1xyi \| SCENE= }}~~	+	Probing the DNA kink structure induced by the hyperthermophilic chromosomal protein Sac7d.,Chen CY, Ko TP, Lin TW, Chou CC, Chen CJ, Wang AH Nucleic Acids Res. 2005 Jan 14;33(1):430-8. Print 2005. PMID:15653643<ref>PMID:15653643</ref>

-	~~===Hyperthermophile chromosomal protein Sac7d double mutant Val26Ala~~/~~Met29Ala in complex with DNA GCGATCGC===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_15653643}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1xyi]] is~~ a ~~3 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Sulfolobus_acidocaldarius Sulfolobus acidocaldarius]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1XYI OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:015653643<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Sulfolobus acidocaldarius]]		[[Category: Sulfolobus acidocaldarius]]
	[[Category: Chen, C J.]]		[[Category: Chen, C J.]]

OCA: Protected "1xyi" [edit=sysop:move=sysop]

OCA — Tue, 14 Aug 2012 16:30:53 GMT

Protected "1xyi" [edit=sysop:move=sysop]

←Older revision

Revision as of 16:30, 14 August 2012

OCA at 16:30, 14 August 2012

OCA — Tue, 14 Aug 2012 16:30:52 GMT

←Older revision		Revision as of 16:30, 14 August 2012
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-	{{Seed}}
	[[Image:1xyi.png\|left\|200px]]		[[Image:1xyi.png\|left\|200px]]

-	<!--
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	{{STRUCTURE_1xyi\| PDB=1xyi \| SCENE= }}		{{STRUCTURE_1xyi\| PDB=1xyi \| SCENE= }}

	===Hyperthermophile chromosomal protein Sac7d double mutant Val26Ala/Met29Ala in complex with DNA GCGATCGC===		===Hyperthermophile chromosomal protein Sac7d double mutant Val26Ala/Met29Ala in complex with DNA GCGATCGC===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_15653643}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 15653643 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_15653643}}		{{ABSTRACT_PUBMED_15653643}}

	==About this Structure==		==About this Structure==
-	~~1XYI is a~~ [[~~Single protein~~]] structure of sequence from [http://en.wikipedia.org/wiki/Sulfolobus_acidocaldarius Sulfolobus acidocaldarius]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XYI OCA].	+	[[1xyi]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Sulfolobus_acidocaldarius Sulfolobus acidocaldarius]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XYI OCA].

	==Reference==		==Reference==
-	~~Probing the DNA kink structure induced by the hyperthermophilic chromosomal protein Sac7d., Chen CY, Ko TP, Lin TW, Chou CC, Chen CJ, Wang AH, Nucleic Acids Res. 2005 Jan 14;33(1):430-8. Print 2005.~~ PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/15653643 15653643]~~	+	<ref group="xtra">PMID:015653643</ref><references group="xtra"/>
-	~~[[Category: Single protein]]~~	+
	[[Category: Sulfolobus acidocaldarius]]		[[Category: Sulfolobus acidocaldarius]]
	[[Category: Chen, C J.]]		[[Category: Chen, C J.]]
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	[[Category: Oligonucleotide binding fold]]		[[Category: Oligonucleotide binding fold]]
	[[Category: Protein-dna complex]]		[[Category: Protein-dna complex]]
-		+	[[Category: Structural protein-dna complex]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Mon Jul 28 17:10:24 2008''~~	+