1y0g - Revision history

OCA at 06:51, 23 August 2023

OCA — Wed, 23 Aug 2023 06:51:18 GMT

←Older revision		Revision as of 06:51, 23 August 2023
Line 3:		Line 3:
	<StructureSection load='1y0g' size='340' side='right'caption='[[1y0g]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1y0g' size='340' side='right'caption='[[1y0g]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1y0g]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacillus_coli"_migula_1895 "bacillus~~ coli~~" migula 1895~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y0G OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1Y0G FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1y0g]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y0G OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y0G FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8PP:2-[(2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAENYL]PHENOL'>8PP</scene>~~</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.2Å</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yceI ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8PP:2-[(2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAENYL]PHENOL'>8PP</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1y0g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y0g OCA], [~~http~~://pdbe.org/1y0g PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1y0g RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1y0g PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1y0g ProSAT], [~~http~~://www.topsan.org/Proteins/NYSGXRC/1y0g TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y0g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y0g OCA], [https://pdbe.org/1y0g PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y0g RCSB], [https://www.ebi.ac.uk/pdbsum/1y0g PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y0g ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1y0g TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/YCEI_ECOLI YCEI_ECOLI]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 20:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacillus~~ coli ~~migula 1895~~]]	+	[[Category: Escherichia coli]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Almo~~, S C~~]]	+	[[Category: Almo SC]]
-	[[Category: Burley~~, S K]]~~	+	[[Category: Burley SK]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Patskovsky YV]]
-	[[Category: Patskovsky~~, Y V~~]]	+	[[Category: Ramagopal U]]
-	[[Category: Ramagopal, U]]	+	[[Category: Strokopytov B]]
-	[[Category: Strokopytov, B]]	+
-	~~[[Category: Coenzyme]]~~	+
-	~~[[Category: Cofactor]]~~	+
-	~~[[Category: Dehydrogenase]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Lipid binding protein]]~~	+
-	~~[[Category: Lipocalin]]~~	+
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]~~	+
-	~~[[Category: Predicted]]~~	+
-	~~[[Category: PSI, Protein structure initiative~~]]	+

OCA at 10:28, 6 January 2021

OCA — Wed, 06 Jan 2021 10:28:02 GMT

←Older revision		Revision as of 10:28, 6 January 2021
Line 1:		Line 1:

	==CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI YCEI PROTEIN, STRUCTURAL GENOMICS==		==CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI YCEI PROTEIN, STRUCTURAL GENOMICS==
-	<StructureSection load='1y0g' size='340' side='right' caption='[[1y0g]], [[Resolution\|resolution]] 2.20Å' scene=''>	+	<StructureSection load='1y0g' size='340' side='right'caption='[[1y0g]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1y0g]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y0G OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1Y0G FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1y0g]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y0G OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1Y0G FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8PP:2-[(2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAENYL]PHENOL'>8PP</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8PP:2-[(2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAENYL]PHENOL'>8PP</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yceI ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yceI ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1y0g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y0g OCA], [http://pdbe.org/1y0g PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1y0g RCSB], [http://www.ebi.ac.uk/pdbsum/1y0g PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1y0g ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/1y0g TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1y0g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y0g OCA], [http://pdbe.org/1y0g PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1y0g RCSB], [http://www.ebi.ac.uk/pdbsum/1y0g PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1y0g ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/1y0g TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 12:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/y0/1y0g_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/y0/1y0g_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Bacillus coli migula 1895]]		[[Category: Bacillus coli migula 1895]]
		+	[[Category: Large Structures]]
	[[Category: Almo, S C]]		[[Category: Almo, S C]]
	[[Category: Burley, S K]]		[[Category: Burley, S K]]

OCA at 15:18, 12 October 2017

OCA — Thu, 12 Oct 2017 15:18:50 GMT

←Older revision		Revision as of 15:18, 12 October 2017
Line 1:		Line 1:
		+
	==CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI YCEI PROTEIN, STRUCTURAL GENOMICS==		==CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI YCEI PROTEIN, STRUCTURAL GENOMICS==
	<StructureSection load='1y0g' size='340' side='right' caption='[[1y0g]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1y0g' size='340' side='right' caption='[[1y0g]], [[Resolution\|resolution]] 2.20Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8PP:2-[(2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAENYL]PHENOL'>8PP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8PP:2-[(2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAENYL]PHENOL'>8PP</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yceI ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yceI ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1y0g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y0g OCA], [http://pdbe.org/1y0g PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1y0g RCSB], [http://www.ebi.ac.uk/pdbsum/1y0g PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1y0g TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1y0g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y0g OCA], [http://pdbe.org/1y0g PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1y0g RCSB], [http://www.ebi.ac.uk/pdbsum/1y0g PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1y0g ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/1y0g TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 15:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1y0g ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 09:49, 11 September 2015

OCA — Fri, 11 Sep 2015 09:49:52 GMT

←Older revision		Revision as of 09:49, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1y0g' size='340' side='right' caption='[[1y0g]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1y0g' size='340' side='right' caption='[[1y0g]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1y0g]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Escherichia_coli Escherichia~~ coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y0G OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Y0G FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1y0g]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y0G OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Y0G FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8PP:2-[(2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAENYL]PHENOL'>8PP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8PP:2-[(2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAENYL]PHENOL'>8PP</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yceI ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 ~~Escherichia~~ coli])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yceI ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1y0g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y0g OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1y0g RCSB], [http://www.ebi.ac.uk/pdbsum/1y0g PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1y0g TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1y0g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y0g OCA], [http://pdbe.org/1y0g PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1y0g RCSB], [http://www.ebi.ac.uk/pdbsum/1y0g PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1y0g TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 19:		Line 19:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Escherichia~~ coli]]	+	[[Category: Bacillus coli migula 1895]]
	[[Category: Almo, S C]]		[[Category: Almo, S C]]
	[[Category: Burley, S K]]		[[Category: Burley, S K]]

OCA at 13:20, 6 November 2014

OCA — Thu, 06 Nov 2014 13:20:07 GMT

←Older revision		Revision as of 13:20, 6 November 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1y0g]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y0G OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Y0G FirstGlance]. <br>		<table><tr><td colspan='2'>[[1y0g]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y0G OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Y0G FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8PP:2-[(2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAENYL]PHENOL'>8PP</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8PP:2-[(2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAENYL]PHENOL'>8PP</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yceI ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yceI ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1y0g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y0g OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1y0g RCSB], [http://www.ebi.ac.uk/pdbsum/1y0g PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1y0g TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1y0g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y0g OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1y0g RCSB], [http://www.ebi.ac.uk/pdbsum/1y0g PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1y0g TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 20:		Line 20:
	</StructureSection>		</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
-	[[Category: Almo, S C.]]	+	[[Category: Almo, S C]]
-	[[Category: Burley, S K.]]	+	[[Category: Burley, S K]]
-	[[Category: ~~NYSGXRC, New York SGX Research Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Patskovsky, Y V.]]	+	[[Category: Patskovsky, Y V]]
-	[[Category: Ramagopal, U.]]	+	[[Category: Ramagopal, U]]
-	[[Category: Strokopytov, B.]]	+	[[Category: Strokopytov, B]]
	[[Category: Coenzyme]]		[[Category: Coenzyme]]
	[[Category: Cofactor]]		[[Category: Cofactor]]
Line 32:		Line 32:
	[[Category: Lipid binding protein]]		[[Category: Lipid binding protein]]
	[[Category: Lipocalin]]		[[Category: Lipocalin]]
-	[[Category: New ~~york sgx research center~~ for ~~structural genomic]]~~	+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
-	~~[[Category: Nysgxrc~~]]	+
	[[Category: Predicted]]		[[Category: Predicted]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi]]~~	+
-	~~[[Category: Structural genomic~~]]	+

OCA at 21:49, 29 September 2014

OCA — Mon, 29 Sep 2014 21:49:00 GMT

←Older revision		Revision as of 21:49, 29 September 2014
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-	~~[[Image:1y0g.png\|left\|200px]]~~	+	==CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI YCEI PROTEIN, STRUCTURAL GENOMICS==
-		+	<StructureSection load='1y0g' size='340' side='right' caption='[[1y0g]], [[Resolution\|resolution]] 2.20Å' scene=''>
-	~~{{STRUCTURE_1y0g\| PDB=1y0g \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[1y0g]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y0G OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Y0G FirstGlance]. <br>
-	===CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI YCEI PROTEIN, STRUCTURAL GENOMICS===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=8PP:2-[(2E,6E,10E,14E,18E,22E,26E)-3,7,11,15,19,23,27,31-OCTAMETHYLDOTRIACONTA-2,6,10,14,18,22,26,30-OCTAENYL]PHENOL'>8PP</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">yceI ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])</td></tr>
-		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1y0g FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y0g OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1y0g RCSB], [http://www.ebi.ac.uk/pdbsum/1y0g PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1y0g TOPSAN]</span></td></tr>
-	==~~About this Structure~~==	+	<table>
-	[[1y0g]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y0G OCA].	+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/y0/1y0g_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Almo, S C.]]		[[Category: Almo, S C.]]

OCA: Protected "1y0g" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 13:19:28 GMT

Protected "1y0g" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:19, 5 January 2013

OCA at 13:19, 5 January 2013

OCA — Sat, 05 Jan 2013 13:19:25 GMT

←Older revision		Revision as of 13:19, 5 January 2013
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-	{{Seed}}
	[[Image:1y0g.png\|left\|200px]]		[[Image:1y0g.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1y0g", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1y0g\| PDB=1y0g \| SCENE= }}		{{STRUCTURE_1y0g\| PDB=1y0g \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~1Y0G~~ is a 4 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y0G OCA].	+	[[1y0g]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y0G OCA].
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
	[[Category: Almo, S C.]]		[[Category: Almo, S C.]]
	[[Category: Burley, S K.]]		[[Category: Burley, S K.]]
-	[[Category: NYSGXRC, New York ~~Structural GenomiX~~ Research ~~Consortium~~.]]	+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
	[[Category: Patskovsky, Y V.]]		[[Category: Patskovsky, Y V.]]
	[[Category: Ramagopal, U.]]		[[Category: Ramagopal, U.]]
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	[[Category: Lipid binding protein]]		[[Category: Lipid binding protein]]
	[[Category: Lipocalin]]		[[Category: Lipocalin]]
-	[[Category: New york ~~structural genomix~~ research ~~consortium~~]]	+	[[Category: New york sgx research center for structural genomic]]
	[[Category: Nysgxrc]]		[[Category: Nysgxrc]]
	[[Category: Predicted]]		[[Category: Predicted]]
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	[[Category: Psi]]		[[Category: Psi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 18:06:15 2008''

OCA at 16:06, 16 November 2008

OCA — Sun, 16 Nov 2008 16:06:20 GMT

←Older revision		Revision as of 16:06, 16 November 2008
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	==About this Structure==		==About this Structure==
-	1Y0G is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y0G OCA].	+	1Y0G is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y0G OCA].
	[[Category: Escherichia coli]]		[[Category: Escherichia coli]]
-	[[Category: Single protein]]
	[[Category: Almo, S C.]]		[[Category: Almo, S C.]]
	[[Category: Burley, S K.]]		[[Category: Burley, S K.]]
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	[[Category: Structural genomic]]		[[Category: Structural genomic]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Sep 29 06~~:32:59 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 18:06:15 2008''

OCA at 03:33, 29 September 2008

OCA — Mon, 29 Sep 2008 03:33:01 GMT

←Older revision		Revision as of 03:33, 29 September 2008
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-	[[Image:1y0g.~~gif~~\|left\|200px]]	+	{{Seed}}
		+	[[Image:1y0g.png\|left\|200px]]

	<!--		<!--
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	{{STRUCTURE_1y0g\| PDB=1y0g \| SCENE= }}		{{STRUCTURE_1y0g\| PDB=1y0g \| SCENE= }}

-	~~'''~~CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI YCEI PROTEIN, STRUCTURAL GENOMICS~~'''~~	+	===CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI YCEI PROTEIN, STRUCTURAL GENOMICS===


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	[[Category: Psi]]		[[Category: Psi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sat May 3 15~~:43:55 2008''	+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 29 06:32:59 2008''