1y1o - Revision history

OCA at 07:59, 15 May 2024

OCA — Wed, 15 May 2024 07:59:54 GMT

←Older revision		Revision as of 07:59, 15 May 2024
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	<StructureSection load='1y1o' size='340' side='right'caption='[[1y1o]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1y1o' size='340' side='right'caption='[[1y1o]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1y1o]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Atcc_12980 Atcc 12980~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y1O OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1Y1O FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1y1o]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y1O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y1O FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>~~, ~~<scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.2Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	~~<tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related~~:~~]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;~~'>~~[[1rzn\|1rzn]]~~</~~div~~><~~/td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y1o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y1o OCA], [https://pdbe.org/1y1o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y1o RCSB], [https://www.ebi.ac.uk/pdbsum/1y1o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y1o ProSAT], [https://www.topsan.org/Proteins/MCSG/1y1o TOPSAN]</span></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">RBSTP1992 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1422 ATCC 12980])~~</td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1y1o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y1o OCA], [~~http~~://pdbe.org/1y1o PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1y1o RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1y1o PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1y1o ProSAT], [~~http~~://www.topsan.org/Proteins/MCSG/1y1o TOPSAN]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/RECU_GEOKA RECU_GEOKA] Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation.[HAMAP-Rule:MF_00130]<ref>PMID:12237459</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1y1o ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1y1o ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Atcc 12980~~]]	+	[[Category: Geobacillus stearothermophilus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Collart, F]]	+	[[Category: Collart F]]
-	[[Category: Joachimiak, A]]	+	[[Category: Joachimiak A]]
-	[[Category: Li, H]]	+	[[Category: Li H]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Moy S]]
-	[[Category: Moy, S]]	+	[[Category: Osipiuk J]]
-	[[Category: Osipiuk, J]]	+
-	~~[[Category: Mcsg]]~~	+
-	~~[[Category: Penicillin-binding protein]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Recombination~~]]	+

OCA at 10:29, 6 January 2021

OCA — Wed, 06 Jan 2021 10:29:37 GMT

←Older revision		Revision as of 10:29, 6 January 2021
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	==X-ray crystal Structure of Penicillin-binding protein-related factor A from Bacillus stearothermophilus==		==X-ray crystal Structure of Penicillin-binding protein-related factor A from Bacillus stearothermophilus==
-	<StructureSection load='1y1o' size='340' side='right' caption='[[1y1o]], [[Resolution\|resolution]] 2.20Å' scene=''>	+	<StructureSection load='1y1o' size='340' side='right'caption='[[1y1o]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1y1o]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_12980 Atcc 12980]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y1O OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1Y1O FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1y1o]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_12980 Atcc 12980]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y1O OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1Y1O FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1rzn\|1rzn]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1rzn\|1rzn]]</div></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RBSTP1992 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1422 ATCC 12980])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RBSTP1992 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1422 ATCC 12980])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1y1o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y1o OCA], [http://pdbe.org/1y1o PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1y1o RCSB], [http://www.ebi.ac.uk/pdbsum/1y1o PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1y1o ProSAT], [http://www.topsan.org/Proteins/MCSG/1y1o TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1y1o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y1o OCA], [http://pdbe.org/1y1o PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1y1o RCSB], [http://www.ebi.ac.uk/pdbsum/1y1o PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1y1o ProSAT], [http://www.topsan.org/Proteins/MCSG/1y1o TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 23:		Line 23:
	</StructureSection>		</StructureSection>
	[[Category: Atcc 12980]]		[[Category: Atcc 12980]]
		+	[[Category: Large Structures]]
	[[Category: Collart, F]]		[[Category: Collart, F]]
	[[Category: Joachimiak, A]]		[[Category: Joachimiak, A]]

OCA at 07:25, 18 April 2018

OCA — Wed, 18 Apr 2018 07:25:50 GMT

←Older revision		Revision as of 07:25, 18 April 2018
Line 1:		Line 1:
		+
	==X-ray crystal Structure of Penicillin-binding protein-related factor A from Bacillus stearothermophilus==		==X-ray crystal Structure of Penicillin-binding protein-related factor A from Bacillus stearothermophilus==
	<StructureSection load='1y1o' size='340' side='right' caption='[[1y1o]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1y1o' size='340' side='right' caption='[[1y1o]], [[Resolution\|resolution]] 2.20Å' scene=''>
Line 7:		Line 8:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1rzn\|1rzn]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1rzn\|1rzn]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RBSTP1992 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1422 ATCC 12980])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RBSTP1992 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1422 ATCC 12980])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1y1o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y1o OCA], [http://pdbe.org/1y1o PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1y1o RCSB], [http://www.ebi.ac.uk/pdbsum/1y1o PDBsum], [http://www.topsan.org/Proteins/MCSG/1y1o TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1y1o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y1o OCA], [http://pdbe.org/1y1o PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1y1o RCSB], [http://www.ebi.ac.uk/pdbsum/1y1o PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1y1o ProSAT], [http://www.topsan.org/Proteins/MCSG/1y1o TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/y1/1y1o_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/y1/1y1o_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1y1o ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 00:53, 12 September 2015

OCA — Sat, 12 Sep 2015 00:53:44 GMT

←Older revision		Revision as of 00:53, 12 September 2015
Line 2:		Line 2:
	<StructureSection load='1y1o' size='340' side='right' caption='[[1y1o]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='1y1o' size='340' side='right' caption='[[1y1o]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1y1o]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Geobacillus_stearothermophilus Geobacillus stearothermophilus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y1O OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Y1O FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1y1o]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_12980 Atcc 12980]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y1O OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Y1O FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1rzn\|1rzn]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1rzn\|1rzn]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RBSTP1992 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1422 ~~Geobacillus stearothermophilus~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RBSTP1992 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1422 ATCC 12980])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1y1o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y1o OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1y1o RCSB], [http://www.ebi.ac.uk/pdbsum/1y1o PDBsum], [http://www.topsan.org/Proteins/MCSG/1y1o TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1y1o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y1o OCA], [http://pdbe.org/1y1o PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1y1o RCSB], [http://www.ebi.ac.uk/pdbsum/1y1o PDBsum], [http://www.topsan.org/Proteins/MCSG/1y1o TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Geobacillus stearothermophilus~~]]	+	[[Category: Atcc 12980]]
	[[Category: Collart, F]]		[[Category: Collart, F]]
	[[Category: Joachimiak, A]]		[[Category: Joachimiak, A]]

OCA at 10:29, 8 January 2015

OCA — Thu, 08 Jan 2015 10:29:08 GMT

←Older revision		Revision as of 10:29, 8 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1y1o]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y1O OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Y1O FirstGlance]. <br>		<table><tr><td colspan='2'>[[1y1o]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y1O OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Y1O FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1rzn\|1rzn]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1rzn\|1rzn]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RBSTP1992 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1422 Geobacillus stearothermophilus])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RBSTP1992 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1422 Geobacillus stearothermophilus])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1y1o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y1o OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1y1o RCSB], [http://www.ebi.ac.uk/pdbsum/1y1o PDBsum], [http://www.topsan.org/Proteins/MCSG/1y1o TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1y1o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y1o OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1y1o RCSB], [http://www.ebi.ac.uk/pdbsum/1y1o PDBsum], [http://www.topsan.org/Proteins/MCSG/1y1o TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 22:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Geobacillus stearothermophilus]]		[[Category: Geobacillus stearothermophilus]]
-	[[Category: Collart, F.]]	+	[[Category: Collart, F]]
-	[[Category: Joachimiak, A.]]	+	[[Category: Joachimiak, A]]
-	[[Category: Li, H.]]	+	[[Category: Li, H]]
-	[[Category: ~~MCSG, Midwest Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Moy, S.]]	+	[[Category: Moy, S]]
-	[[Category: Osipiuk, J.]]	+	[[Category: Osipiuk, J]]
	[[Category: Mcsg]]		[[Category: Mcsg]]
-	[[Category: Midwest center for structural genomic]]
	[[Category: Penicillin-binding protein]]		[[Category: Penicillin-binding protein]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi~~]]	+
	[[Category: Recombination]]		[[Category: Recombination]]
-	[[Category: Structural genomic]]

OCA at 21:04, 29 September 2014

OCA — Mon, 29 Sep 2014 21:04:08 GMT

←Older revision		Revision as of 21:04, 29 September 2014
Line 1:		Line 1:
-	~~[[Image:1y1o.png\|left\|200px]]~~	+	==X-ray crystal Structure of Penicillin-binding protein-related factor A from Bacillus stearothermophilus==
-		+	<StructureSection load='1y1o' size='340' side='right' caption='[[1y1o]], [[Resolution\|resolution]] 2.20Å' scene=''>
-	~~{{STRUCTURE_1y1o\| PDB=1y1o \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[1y1o]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y1O OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Y1O FirstGlance]. <br>
-	===X-ray crystal Structure of Penicillin-binding protein-related factor A from Bacillus stearothermophilus===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1rzn\|1rzn]]</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RBSTP1992 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1422 Geobacillus stearothermophilus])</td></tr>
-	[[1y1o]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y1O OCA].	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1y1o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y1o OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1y1o RCSB], [http://www.ebi.ac.uk/pdbsum/1y1o PDBsum], [http://www.topsan.org/Proteins/MCSG/1y1o TOPSAN]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/y1/1y1o_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Geobacillus stearothermophilus]]		[[Category: Geobacillus stearothermophilus]]
	[[Category: Collart, F.]]		[[Category: Collart, F.]]

OCA: Protected "1y1o" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 12:04:21 GMT

Protected "1y1o" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:04, 5 January 2013

OCA at 12:04, 5 January 2013

OCA — Sat, 05 Jan 2013 12:04:18 GMT

←Older revision		Revision as of 12:04, 5 January 2013
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-	{{Seed}}
	[[Image:1y1o.png\|left\|200px]]		[[Image:1y1o.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1y1o", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1y1o\| PDB=1y1o \| SCENE= }}		{{STRUCTURE_1y1o\| PDB=1y1o \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~1Y1O~~ is a 4 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y1O OCA].	+	[[1y1o]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y1O OCA].
	[[Category: Geobacillus stearothermophilus]]		[[Category: Geobacillus stearothermophilus]]
	[[Category: Collart, F.]]		[[Category: Collart, F.]]
Line 27:		Line 20:
	[[Category: Protein structure initiative]]		[[Category: Protein structure initiative]]
	[[Category: Psi]]		[[Category: Psi]]
		+	[[Category: Recombination]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 16:31:45 2008''

OCA at 14:31, 16 November 2008

OCA — Sun, 16 Nov 2008 14:31:47 GMT

←Older revision		Revision as of 14:31, 16 November 2008
Line 14:		Line 14:

	==About this Structure==		==About this Structure==
-	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y1O OCA].	+	1Y1O is a 4 chains structure of sequences from [http://en.wikipedia.org/wiki/Geobacillus_stearothermophilus Geobacillus stearothermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y1O OCA].
		+	[[Category: Geobacillus stearothermophilus]]
	[[Category: Collart, F.]]		[[Category: Collart, F.]]
	[[Category: Joachimiak, A.]]		[[Category: Joachimiak, A.]]
Line 28:		Line 29:
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Sep 29 03~~:15:16 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 16:31:45 2008''

OCA at 00:15, 29 September 2008

OCA — Mon, 29 Sep 2008 00:15:17 GMT

←Older revision		Revision as of 00:15, 29 September 2008
Line 1:		Line 1:
-	[[Image:1y1o.~~gif~~\|left\|200px]]	+	{{Seed}}
		+	[[Image:1y1o.png\|left\|200px]]

	<!--		<!--
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	{{STRUCTURE_1y1o\| PDB=1y1o \| SCENE= }}		{{STRUCTURE_1y1o\| PDB=1y1o \| SCENE= }}

-	~~'''~~X-ray crystal Structure of Penicillin-binding protein-related factor A from Bacillus stearothermophilus~~'''~~	+	===X-ray crystal Structure of Penicillin-binding protein-related factor A from Bacillus stearothermophilus===


Line 26:		Line 27:
	[[Category: Psi]]		[[Category: Psi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sat May 3 15~~:46:38 2008''	+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Sep 29 03:15:16 2008''