1y81 - Revision history

OCA at 08:01, 15 May 2024

OCA — Wed, 15 May 2024 08:01:15 GMT

←Older revision		Revision as of 08:01, 15 May 2024
Line 3:		Line 3:
	<StructureSection load='1y81' size='340' side='right'caption='[[1y81]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='1y81' size='340' side='right'caption='[[1y81]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1y81]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_43587 Atcc 43587~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y81 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y81 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1y81]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y81 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y81 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=COA:COENZYME+A'>COA</scene>, <scene name='pdbligand=~~SCN~~:~~THIOCYANATE+ION~~'>~~SCN~~</scene>, <scene name='pdbligand=~~UNX~~:~~UNKNOWN+ATOM+OR~~+ION'>~~UNX~~</scene>~~</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.701Å</td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=COA:COENZYME+A'>COA</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y81 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y81 OCA], [https://pdbe.org/1y81 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y81 RCSB], [https://www.ebi.ac.uk/pdbsum/1y81 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y81 ProSAT], [https://www.topsan.org/Proteins/SECSG/1y81 TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y81 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y81 OCA], [https://pdbe.org/1y81 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y81 RCSB], [https://www.ebi.ac.uk/pdbsum/1y81 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y81 ProSAT], [https://www.topsan.org/Proteins/SECSG/1y81 TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q8U2V3_PYRFU Q8U2V3_PYRFU]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 20:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 43587]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Adams, M W.W]]
-	[[Category: Chang, J]]
-	[[Category: Chang, S H]]
-	[[Category: Chen, L]]
-	[[Category: Florence, Q]]
-	[[Category: Habel, J]]
-	[[Category: Horanyi, P]]
-	[[Category: Jenney, F E]]
-	[[Category: Lee, D]]
-	[[Category: Lin, D]]
-	[[Category: Liu, Z J]]
-	[[Category: Nguyen, D]]
-	[[Category: Praissman, J]]
-	[[Category: Rose, J P]]
-	[[Category: Structural genomic]]
-	[[Category: Tempel, W]]
-	[[Category: Wang, B C]]
-	[[Category: Xu, H]]
-	[[Category: Zhang, H]]
-	[[Category: Zhao, M]]
-	[[Category: Zhou, W]]
-	[[Category: Conserved hypothetical protein]]
-	[[Category: Hyperthermophile]]
-	[[Category: PSI, Protein structure initiative]]
	[[Category: Pyrococcus furiosus]]		[[Category: Pyrococcus furiosus]]
-	[[Category: ~~Secsg~~]]	+	[[Category: Adams MWW]]
-	[[Category: ~~Unknown function~~]]	+	[[Category: Chang J]]
		+	[[Category: Chang S-H]]
		+	[[Category: Chen L]]
		+	[[Category: Florence Q]]
		+	[[Category: Habel J]]
		+	[[Category: Horanyi P]]
		+	[[Category: Jenney Jr FE]]
		+	[[Category: Lee D]]
		+	[[Category: Lin D]]
		+	[[Category: Liu Z-J]]
		+	[[Category: Nguyen D]]
		+	[[Category: Praissman J]]
		+	[[Category: Rose JP]]
		+	[[Category: Tempel W]]
		+	[[Category: Wang B-C]]
		+	[[Category: Xu H]]
		+	[[Category: Zhang H]]
		+	[[Category: Zhao M]]
		+	[[Category: Zhou W]]

OCA at 09:07, 21 April 2021

OCA — Wed, 21 Apr 2021 09:07:10 GMT

←Older revision		Revision as of 09:07, 21 April 2021
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	<StructureSection load='1y81' size='340' side='right'caption='[[1y81]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='1y81' size='340' side='right'caption='[[1y81]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1y81]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_43587 Atcc 43587]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y81 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1Y81 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1y81]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_43587 Atcc 43587]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y81 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Y81 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=COA:COENZYME+A'>COA</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=COA:COENZYME+A'>COA</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1y81 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y81 OCA], [~~http~~://pdbe.org/1y81 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1y81 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1y81 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1y81 ProSAT], [~~http~~://www.topsan.org/Proteins/SECSG/1y81 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1y81 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y81 OCA], [https://pdbe.org/1y81 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1y81 RCSB], [https://www.ebi.ac.uk/pdbsum/1y81 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1y81 ProSAT], [https://www.topsan.org/Proteins/SECSG/1y81 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 13:15, 17 July 2019

OCA — Wed, 17 Jul 2019 13:15:36 GMT

←Older revision		Revision as of 13:15, 17 July 2019
Line 1:		Line 1:

	==Conserved hypothetical protein Pfu-723267-001 from Pyrococcus furiosus==		==Conserved hypothetical protein Pfu-723267-001 from Pyrococcus furiosus==
-	<StructureSection load='1y81' size='340' side='right' caption='[[1y81]], [[Resolution\|resolution]] 1.70Å' scene=''>	+	<StructureSection load='1y81' size='340' side='right'caption='[[1y81]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1y81]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43587 Atcc 43587]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y81 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Y81 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1y81]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43587 Atcc 43587]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y81 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Y81 FirstGlance]. <br>
Line 12:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/y8/1y81_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/y8/1y81_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Atcc 43587]]		[[Category: Atcc 43587]]
		+	[[Category: Large Structures]]
	[[Category: Adams, M W.W]]		[[Category: Adams, M W.W]]
	[[Category: Chang, J]]		[[Category: Chang, J]]

OCA at 13:28, 12 October 2017

OCA — Thu, 12 Oct 2017 13:28:25 GMT

←Older revision		Revision as of 13:28, 12 October 2017
Line 1:		Line 1:
		+
	==Conserved hypothetical protein Pfu-723267-001 from Pyrococcus furiosus==		==Conserved hypothetical protein Pfu-723267-001 from Pyrococcus furiosus==
	<StructureSection load='1y81' size='340' side='right' caption='[[1y81]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='1y81' size='340' side='right' caption='[[1y81]], [[Resolution\|resolution]] 1.70Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=COA:COENZYME+A'>COA</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=COA:COENZYME+A'>COA</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1y81 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y81 OCA], [http://pdbe.org/1y81 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1y81 RCSB], [http://www.ebi.ac.uk/pdbsum/1y81 PDBsum], [http://www.topsan.org/Proteins/SECSG/1y81 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1y81 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y81 OCA], [http://pdbe.org/1y81 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1y81 RCSB], [http://www.ebi.ac.uk/pdbsum/1y81 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1y81 ProSAT], [http://www.topsan.org/Proteins/SECSG/1y81 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 15:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1y81 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 15:16, 11 September 2015

OCA — Fri, 11 Sep 2015 15:16:03 GMT

←Older revision		Revision as of 15:16, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1y81' size='340' side='right' caption='[[1y81]], [[Resolution\|resolution]] 1.70Å' scene=''>		<StructureSection load='1y81' size='340' side='right' caption='[[1y81]], [[Resolution\|resolution]] 1.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1y81]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pyrococcus_furiosus Pyrococcus furiosus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y81 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Y81 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1y81]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43587 Atcc 43587]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y81 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Y81 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=COA:COENZYME+A'>COA</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=COA:COENZYME+A'>COA</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1y81 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y81 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1y81 RCSB], [http://www.ebi.ac.uk/pdbsum/1y81 PDBsum], [http://www.topsan.org/Proteins/SECSG/1y81 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1y81 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y81 OCA], [http://pdbe.org/1y81 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1y81 RCSB], [http://www.ebi.ac.uk/pdbsum/1y81 PDBsum], [http://www.topsan.org/Proteins/SECSG/1y81 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 19:		Line 19:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Pyrococcus furiosus~~]]	+	[[Category: Atcc 43587]]
	[[Category: Adams, M W.W]]		[[Category: Adams, M W.W]]
	[[Category: Chang, J]]		[[Category: Chang, J]]
Line 44:		Line 44:
	[[Category: Hyperthermophile]]		[[Category: Hyperthermophile]]
	[[Category: PSI, Protein structure initiative]]		[[Category: PSI, Protein structure initiative]]
		+	[[Category: Pyrococcus furiosus]]
	[[Category: Secsg]]		[[Category: Secsg]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 09:17, 8 January 2015

OCA — Thu, 08 Jan 2015 09:17:24 GMT

←Older revision		Revision as of 09:17, 8 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1y81]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y81 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Y81 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1y81]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y81 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Y81 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=COA:COENZYME+A'>COA</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=COA:COENZYME+A'>COA</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1y81 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y81 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1y81 RCSB], [http://www.ebi.ac.uk/pdbsum/1y81 PDBsum], [http://www.topsan.org/Proteins/SECSG/1y81 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1y81 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y81 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1y81 RCSB], [http://www.ebi.ac.uk/pdbsum/1y81 PDBsum], [http://www.topsan.org/Proteins/SECSG/1y81 TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 20:		Line 20:
	</StructureSection>		</StructureSection>
	[[Category: Pyrococcus furiosus]]		[[Category: Pyrococcus furiosus]]
-	[[Category: Adams, M W.W.]]	+	[[Category: Adams, M W.W]]
-	[[Category: Chang, J.]]	+	[[Category: Chang, J]]
-	[[Category: Chang, S H.]]	+	[[Category: Chang, S H]]
-	[[Category: Chen, L.]]	+	[[Category: Chen, L]]
-	[[Category: Florence, Q.]]	+	[[Category: Florence, Q]]
-	[[Category: Habel, J.]]	+	[[Category: Habel, J]]
-	[[Category: Horanyi, P.]]	+	[[Category: Horanyi, P]]
-	[[Category: Jenney, F E.]]	+	[[Category: Jenney, F E]]
-	[[Category: Lee, D.]]	+	[[Category: Lee, D]]
-	[[Category: Lin, D.]]	+	[[Category: Lin, D]]
-	[[Category: Liu, Z J.]]	+	[[Category: Liu, Z J]]
-	[[Category: Nguyen, D.]]	+	[[Category: Nguyen, D]]
-	[[Category: Praissman, J.]]	+	[[Category: Praissman, J]]
-	[[Category: Rose, J P.]]	+	[[Category: Rose, J P]]
-	[[Category: ~~SECSG, Southeast Collaboratory for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Tempel, W.]]	+	[[Category: Tempel, W]]
-	[[Category: Wang, B C.]]	+	[[Category: Wang, B C]]
-	[[Category: Xu, H.]]	+	[[Category: Xu, H]]
-	[[Category: Zhang, H.]]	+	[[Category: Zhang, H]]
-	[[Category: Zhao, M.]]	+	[[Category: Zhao, M]]
-	[[Category: Zhou, W.]]	+	[[Category: Zhou, W]]
	[[Category: Conserved hypothetical protein]]		[[Category: Conserved hypothetical protein]]
	[[Category: Hyperthermophile]]		[[Category: Hyperthermophile]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi]]~~	+
-	~~[[Category: Pyrococcus furiosus~~]]	+
	[[Category: Secsg]]		[[Category: Secsg]]
-	[[Category: Southeast collaboratory for structural genomic]]
-	[[Category: Structural genomic]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 21:25, 29 September 2014

OCA — Mon, 29 Sep 2014 21:25:54 GMT

←Older revision		Revision as of 21:25, 29 September 2014
Line 1:		Line 1:
-	~~[[Image:1y81.png\|left\|200px]]~~	+	==Conserved hypothetical protein Pfu-723267-001 from Pyrococcus furiosus==
-		+	<StructureSection load='1y81' size='340' side='right' caption='[[1y81]], [[Resolution\|resolution]] 1.70Å' scene=''>
-	~~{{STRUCTURE_1y81\| PDB=1y81 \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[1y81]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y81 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Y81 FirstGlance]. <br>
-	===Conserved hypothetical protein Pfu-723267-001 from Pyrococcus furiosus===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=COA:COENZYME+A'>COA</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	~~{{ABSTRACT_PUBMED_017342453}}~~	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1y81 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1y81 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1y81 RCSB], [http://www.ebi.ac.uk/pdbsum/1y81 PDBsum], [http://www.topsan.org/Proteins/SECSG/1y81 TOPSAN]</span></td></tr>
-		+	<table>
-	==~~About this Structure~~==	+	== Evolutionary Conservation ==
-	[[1y81]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y81 OCA].	+	[[Image:Consurf_key_small.gif\|200px\|right]]
-		+	Check<jmol>
-	==~~Reference~~==	+	<jmolCheckbox>
-	<~~ref group~~="~~xtra~~">~~PMID~~:~~017342453~~</~~ref~~><~~references group~~="~~xtra~~"/>	+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/y8/1y81_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Pyrococcus furiosus]]		[[Category: Pyrococcus furiosus]]
	[[Category: Adams, M W.W.]]		[[Category: Adams, M W.W.]]

OCA: Protected "1y81" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 17:18:47 GMT

Protected "1y81" [edit=sysop:move=sysop]

←Older revision

Revision as of 17:18, 5 January 2013

OCA at 17:18, 5 January 2013

OCA — Sat, 05 Jan 2013 17:18:44 GMT

←Older revision		Revision as of 17:18, 5 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1y81.png\|left\|200px]]		[[Image:1y81.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1y81", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1y81\| PDB=1y81 \| SCENE= }}		{{STRUCTURE_1y81\| PDB=1y81 \| SCENE= }}

	===Conserved hypothetical protein Pfu-723267-001 from Pyrococcus furiosus===		===Conserved hypothetical protein Pfu-723267-001 from Pyrococcus furiosus===

		+	{{ABSTRACT_PUBMED_017342453}}

	==About this Structure==		==About this Structure==
-	~~1Y81~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y81 OCA].	+	[[1y81]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y81 OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:017342453</ref><references group="xtra"/>
	[[Category: Pyrococcus furiosus]]		[[Category: Pyrococcus furiosus]]
	[[Category: Adams, M W.W.]]		[[Category: Adams, M W.W.]]
Line 23:		Line 20:
	[[Category: Habel, J.]]		[[Category: Habel, J.]]
	[[Category: Horanyi, P.]]		[[Category: Horanyi, P.]]
-	[[Category: ~~Jr.~~, F E~~.Jenney~~.]]	+	[[Category: Jenney, F E.]]
	[[Category: Lee, D.]]		[[Category: Lee, D.]]
	[[Category: Lin, D.]]		[[Category: Lin, D.]]
Line 45:		Line 42:
	[[Category: Southeast collaboratory for structural genomic]]		[[Category: Southeast collaboratory for structural genomic]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-		+	[[Category: Unknown function]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Sun Nov 16 17:10:39 2008''~~	+

OCA at 15:10, 16 November 2008

OCA — Sun, 16 Nov 2008 15:10:42 GMT

←Older revision		Revision as of 15:10, 16 November 2008
Line 14:		Line 14:

	==About this Structure==		==About this Structure==
-	1Y81 is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y81 OCA].	+	1Y81 is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Y81 OCA].
	[[Category: Pyrococcus furiosus]]		[[Category: Pyrococcus furiosus]]
-	[[Category: Single protein]]
	[[Category: Adams, M W.W.]]		[[Category: Adams, M W.W.]]
	[[Category: Chang, J.]]		[[Category: Chang, J.]]
Line 47:		Line 46:
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Sep 29 04~~:39:59 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 17:10:39 2008''