1yfi - Revision history

OCA at 06:56, 23 August 2023

OCA — Wed, 23 Aug 2023 06:56:38 GMT

←Older revision		Revision as of 06:56, 23 August 2023
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1yfi]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Moraxella_sp. Moraxella sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YFI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YFI FirstGlance]. <br>		<table><tr><td colspan='2'>[[1yfi]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Moraxella_sp. Moraxella sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YFI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YFI FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yfi OCA], [https://pdbe.org/1yfi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yfi RCSB], [https://www.ebi.ac.uk/pdbsum/1yfi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yfi ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.7Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yfi OCA], [https://pdbe.org/1yfi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yfi RCSB], [https://www.ebi.ac.uk/pdbsum/1yfi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yfi ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 06:38, 26 October 2022

OCA — Wed, 26 Oct 2022 06:38:35 GMT

←Older revision		Revision as of 06:38, 26 October 2022
Line 3:		Line 3:
	<StructureSection load='1yfi' size='340' side='right'caption='[[1yfi]], [[Resolution\|resolution]] 2.70Å' scene=''>		<StructureSection load='1yfi' size='340' side='right'caption='[[1yfi]], [[Resolution\|resolution]] 2.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1yfi]] is a 6 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Morsp Morsp~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YFI OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1YFI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1yfi]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Moraxella_sp. Moraxella sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YFI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YFI FirstGlance]. <br>
-	</td></tr>~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1sa3\|1sa3]]</div></td></tr>~~	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yfi OCA], [https://pdbe.org/1yfi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yfi RCSB], [https://www.ebi.ac.uk/pdbsum/1yfi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yfi ProSAT]</span></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mspIR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=479 MORSP])</td></tr>~~	+
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Type_II_site-specific_deoxyribonuclease Type II site-specific deoxyribonuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.21.4 3.1.21.4] </span></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1yfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yfi OCA], [~~http~~://pdbe.org/1yfi PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1yfi RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1yfi PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1yfi ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/T2M1_MORSP T2M1_MORSP]] Recognizes the double-stranded sequence CCGG and cleaves after C-1.	+	[https://www.uniprot.org/uniprot/T2M1_MORSP T2M1_MORSP] Recognizes the double-stranded sequence CCGG and cleaves after C-1.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Morsp]]~~	+	[[Category: Moraxella sp]]
-	~~[[Category: Type II site-specific deoxyribonuclease~~]]	+	[[Category: Guo H-C]]
-	[[Category: Guo, H C]]	+	[[Category: Kucera RB]]
-	[[Category: Kucera~~, R B~~]]	+	[[Category: Roberts RJ]]
-	[[Category: Roberts~~, R J~~]]	+	[[Category: Xu QS]]
-	[[Category: Xu~~, Q S]]~~	+
-	~~[[Category: Hydrolase-dna complex]]~~	+
-	~~[[Category: Protein-dna complex~~]]	+

OCA at 08:44, 20 January 2021

OCA — Wed, 20 Jan 2021 08:44:49 GMT

←Older revision		Revision as of 08:44, 20 January 2021
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	==Crystal Structure of restriction endonuclease MspI in complex with its cognate DNA in P212121 space group==		==Crystal Structure of restriction endonuclease MspI in complex with its cognate DNA in P212121 space group==
-	<StructureSection load='1yfi' size='340' side='right' caption='[[1yfi]], [[Resolution\|resolution]] 2.70Å' scene=''>	+	<StructureSection load='1yfi' size='340' side='right'caption='[[1yfi]], [[Resolution\|resolution]] 2.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1yfi]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Morsp Morsp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YFI OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1YFI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1yfi]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Morsp Morsp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YFI OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1YFI FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1sa3\|1sa3]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1sa3\|1sa3]]</div></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mspIR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=479 MORSP])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mspIR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=479 MORSP])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Type_II_site-specific_deoxyribonuclease Type II site-specific deoxyribonuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.21.4 3.1.21.4] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Type_II_site-specific_deoxyribonuclease Type II site-specific deoxyribonuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.21.4 3.1.21.4] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1yfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yfi OCA], [http://pdbe.org/1yfi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yfi RCSB], [http://www.ebi.ac.uk/pdbsum/1yfi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1yfi ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1yfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yfi OCA], [http://pdbe.org/1yfi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yfi RCSB], [http://www.ebi.ac.uk/pdbsum/1yfi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1yfi ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 22:		Line 22:

	==See Also==		==See Also==
-	*[[Endonuclease\|Endonuclease]]	+	*[[Endonuclease 3D structures\|Endonuclease 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Morsp]]		[[Category: Morsp]]
	[[Category: Type II site-specific deoxyribonuclease]]		[[Category: Type II site-specific deoxyribonuclease]]

OCA at 07:03, 25 April 2018

OCA — Wed, 25 Apr 2018 07:03:32 GMT

←Older revision		Revision as of 07:03, 25 April 2018
Line 1:		Line 1:
		+
	==Crystal Structure of restriction endonuclease MspI in complex with its cognate DNA in P212121 space group==		==Crystal Structure of restriction endonuclease MspI in complex with its cognate DNA in P212121 space group==
	<StructureSection load='1yfi' size='340' side='right' caption='[[1yfi]], [[Resolution\|resolution]] 2.70Å' scene=''>		<StructureSection load='1yfi' size='340' side='right' caption='[[1yfi]], [[Resolution\|resolution]] 2.70Å' scene=''>
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	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mspIR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=479 MORSP])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mspIR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=479 MORSP])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Type_II_site-specific_deoxyribonuclease Type II site-specific deoxyribonuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.21.4 3.1.21.4] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Type_II_site-specific_deoxyribonuclease Type II site-specific deoxyribonuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.21.4 3.1.21.4] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yfi OCA], [http://pdbe.org/1yfi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yfi RCSB], [http://www.ebi.ac.uk/pdbsum/1yfi PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yfi OCA], [http://pdbe.org/1yfi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yfi RCSB], [http://www.ebi.ac.uk/pdbsum/1yfi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1yfi ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 10:35, 10 September 2015

OCA — Thu, 10 Sep 2015 10:35:17 GMT

←Older revision		Revision as of 10:35, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1yfi' size='340' side='right' caption='[[1yfi]], [[Resolution\|resolution]] 2.70Å' scene=''>		<StructureSection load='1yfi' size='340' side='right' caption='[[1yfi]], [[Resolution\|resolution]] 2.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1yfi]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Moraxella_sp. Moraxella sp.~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YFI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YFI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1yfi]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Morsp Morsp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YFI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YFI FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1sa3\|1sa3]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1sa3\|1sa3]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mspIR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=479 ~~Moraxella sp.~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mspIR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=479 MORSP])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Type_II_site-specific_deoxyribonuclease Type II site-specific deoxyribonuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.21.4 3.1.21.4] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Type_II_site-specific_deoxyribonuclease Type II site-specific deoxyribonuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.21.4 3.1.21.4] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yfi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1yfi RCSB], [http://www.ebi.ac.uk/pdbsum/1yfi PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yfi OCA], [http://pdbe.org/1yfi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yfi RCSB], [http://www.ebi.ac.uk/pdbsum/1yfi PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 18:		Line 18:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1yfi" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 25:		Line 26:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Moraxella sp~~]]	+	[[Category: Morsp]]
	[[Category: Type II site-specific deoxyribonuclease]]		[[Category: Type II site-specific deoxyribonuclease]]
	[[Category: Guo, H C]]		[[Category: Guo, H C]]

OCA at 22:37, 24 December 2014

OCA — Wed, 24 Dec 2014 22:37:28 GMT

←Older revision		Revision as of 22:37, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1yfi]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Moraxella_sp. Moraxella sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YFI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YFI FirstGlance]. <br>		<table><tr><td colspan='2'>[[1yfi]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Moraxella_sp. Moraxella sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YFI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YFI FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1sa3\|1sa3]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1sa3\|1sa3]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mspIR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=479 Moraxella sp.])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mspIR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=479 Moraxella sp.])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Type_II_site-specific_deoxyribonuclease Type II site-specific deoxyribonuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.21.4 3.1.21.4] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Type_II_site-specific_deoxyribonuclease Type II site-specific deoxyribonuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.21.4 3.1.21.4] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yfi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1yfi RCSB], [http://www.ebi.ac.uk/pdbsum/1yfi PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yfi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1yfi RCSB], [http://www.ebi.ac.uk/pdbsum/1yfi PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/T2M1_MORSP T2M1_MORSP]] Recognizes the double-stranded sequence CCGG and cleaves after C-1.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 23:		Line 25:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Moraxella sp.]]	+	[[Category: Moraxella sp]]
	[[Category: Type II site-specific deoxyribonuclease]]		[[Category: Type II site-specific deoxyribonuclease]]
-	[[Category: Guo, H C.]]	+	[[Category: Guo, H C]]
-	[[Category: Kucera, R B.]]	+	[[Category: Kucera, R B]]
-	[[Category: Roberts, R J.]]	+	[[Category: Roberts, R J]]
-	[[Category: Xu, Q S.]]	+	[[Category: Xu, Q S]]
	[[Category: Hydrolase-dna complex]]		[[Category: Hydrolase-dna complex]]
	[[Category: Protein-dna complex]]		[[Category: Protein-dna complex]]

OCA at 19:55, 28 September 2014

OCA — Sun, 28 Sep 2014 19:55:28 GMT

←Older revision		Revision as of 19:55, 28 September 2014
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-	[[~~Image:~~1yfi.~~png~~\|~~left~~\|~~200px~~]]	+	==Crystal Structure of restriction endonuclease MspI in complex with its cognate DNA in P212121 space group==
		+	<StructureSection load='1yfi' size='340' side='right' caption='[[1yfi]], [[Resolution\|resolution]] 2.70Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1yfi]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Moraxella_sp. Moraxella sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YFI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YFI FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1sa3\|1sa3]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">mspIR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=479 Moraxella sp.])</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Type_II_site-specific_deoxyribonuclease Type II site-specific deoxyribonuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.21.4 3.1.21.4] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yfi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yfi OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1yfi RCSB], [http://www.ebi.ac.uk/pdbsum/1yfi PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The crystal structure of the Type IIP restriction endonuclease MspI bound to DNA containing its cognate recognition sequence has been determined in both monoclinic and orthorhombic space groups. Significantly, these two independent crystal forms present an identical structure of a novel monomer-DNA complex, suggesting a functional role for this novel enzyme-DNA complex. In both crystals, MspI interacts with the CCGG DNA recognition sequence as a monomer, using an asymmetric mode of recognition by two different structural motifs in a single polypeptide. In the crystallographic asymmetric unit, the two DNA molecules in the two MspI-DNA complexes appear to stack with each other forming an end-to-end pseudo-continuous 19-mer duplex. They are primarily B-form and no major bends or kinks are observed. For DNA recognition, most of the specific contacts between the enzyme and the DNA are preserved in the orthorhombic structure compared with the monoclinic structure. A cation is observed near the catalytic center in the monoclinic structure at a position homologous to the 74/45 metal site of EcoRV, and the orthorhombic structure also shows signs of this same cation. However, the coordination ligands of the metal are somewhat different from those of the 74/45 metal site of EcoRV. Combined with structural information from other solved structures of Type II restriction enzymes, the possible relationship between the structures of the enzymes and their cleavage behaviors is discussed.

-	~~{{STRUCTURE_1yfi\| PDB=1yfi \| SCENE= }}~~	+	Two crystal forms of the restriction enzyme MspI-DNA complex show the same novel structure.,Xu QS, Roberts RJ, Guo HC Protein Sci. 2005 Oct;14(10):2590-600. PMID:16195548<ref>PMID:16195548</ref>

-	~~===Crystal Structure~~ of ~~restriction endonuclease MspI in complex with its cognate DNA in P212121 space group===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_16195548}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1yfi]] is a 6 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Moraxella_sp~~. ~~Moraxella sp.]. Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1YFI OCA].~~	+

	==See Also==		==See Also==
	*[[Endonuclease\|Endonuclease]]		*[[Endonuclease\|Endonuclease]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:016195548<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Moraxella sp.]]		[[Category: Moraxella sp.]]
	[[Category: Type II site-specific deoxyribonuclease]]		[[Category: Type II site-specific deoxyribonuclease]]

OCA at 09:49, 20 October 2012

OCA — Sat, 20 Oct 2012 09:49:54 GMT

←Older revision		Revision as of 09:49, 20 October 2012
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	==About this Structure==		==About this Structure==
-	[[1yfi]] is a 6 chain structure ~~of [[Endonuclease]]~~ with sequence from [http://en.wikipedia.org/wiki/Moraxella_sp. Moraxella sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YFI OCA].	+	[[1yfi]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Moraxella_sp. Moraxella sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YFI OCA].

	==See Also==		==See Also==

OCA at 00:05, 26 July 2012

OCA — Thu, 26 Jul 2012 00:05:14 GMT

←Older revision		Revision as of 00:05, 26 July 2012
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	[[Image:1yfi.png\|left\|200px]]		[[Image:1yfi.png\|left\|200px]]

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	===Crystal Structure of restriction endonuclease MspI in complex with its cognate DNA in P212121 space group===		===Crystal Structure of restriction endonuclease MspI in complex with its cognate DNA in P212121 space group===

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OCA: Protected "1yfi" [edit=sysop:move=sysop]

OCA — Sat, 02 Jun 2012 09:30:44 GMT

Protected "1yfi" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:30, 2 June 2012