1ygw - Revision history

OCA at 08:03, 15 May 2024

OCA — Wed, 15 May 2024 08:03:13 GMT

←Older revision		Revision as of 08:03, 15 May 2024
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	==NMR STRUCTURE OF RIBONUCLEASE T1, 34 STRUCTURES==		==NMR STRUCTURE OF RIBONUCLEASE T1, 34 STRUCTURES==
-	<StructureSection load='1ygw' size='340' side='right'caption='[[1ygw~~]], [[NMR_Ensembles_of_Models \| 34 NMR models~~]]' scene=''>	+	<StructureSection load='1ygw' size='340' side='right'caption='[[1ygw]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1ygw]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Aspoz Aspoz~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YGW OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1YGW FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1ygw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aspergillus_oryzae Aspergillus oryzae]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YGW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YGW FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>RIBONUCLEASE T1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id~~=5062 ASPOZ])</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-	~~<tr id='activity'><td class~~="~~sblockLbl~~"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribonuclease_T(1) Ribonuclease T(1)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.27.3 3.1.27.3] </span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ygw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ygw OCA], [https://pdbe.org/1ygw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ygw RCSB], [https://www.ebi.ac.uk/pdbsum/1ygw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ygw ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1ygw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ygw OCA], [~~http~~://pdbe.org/1ygw PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1ygw RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1ygw PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1ygw ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/RNT1_ASPOR RNT1_ASPOR]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 31:
	==See Also==		==See Also==
	*[[Ribonuclease 3D structures\|Ribonuclease 3D structures]]		*[[Ribonuclease 3D structures\|Ribonuclease 3D structures]]
-	*[[Temp\|Temp]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Aspoz~~]]	+	[[Category: Aspergillus oryzae]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Karimi-Nejad, Y]]	+	[[Category: Karimi-Nejad Y]]
-	[[Category: Pfeiffer, S]]	+	[[Category: Pfeiffer S]]
-	[[Category: Ruterjans, H]]	+	[[Category: Ruterjans H]]
-	~~[[Category: Endonuclease]]~~	+
-	~~[[Category: Endoribonuclease]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Ribonuclease]]~~	+
-	~~[[Category: Ribonuclease t1 precursor~~]]	+

OCA at 08:45, 20 January 2021

OCA — Wed, 20 Jan 2021 08:45:29 GMT

←Older revision		Revision as of 08:45, 20 January 2021
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	==NMR STRUCTURE OF RIBONUCLEASE T1, 34 STRUCTURES==		==NMR STRUCTURE OF RIBONUCLEASE T1, 34 STRUCTURES==
-	<StructureSection load='1ygw' size='340' side='right' caption='[[1ygw]], [[NMR_Ensembles_of_Models \| 34 NMR models]]' scene=''>	+	<StructureSection load='1ygw' size='340' side='right'caption='[[1ygw]], [[NMR_Ensembles_of_Models \| 34 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1ygw]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aspoz Aspoz]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YGW OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1YGW FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1ygw]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aspoz Aspoz]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YGW OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1YGW FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RIBONUCLEASE T1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5062 ASPOZ])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RIBONUCLEASE T1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5062 ASPOZ])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribonuclease_T(1) Ribonuclease T(1)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.27.3 3.1.27.3] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribonuclease_T(1) Ribonuclease T(1)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.27.3 3.1.27.3] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1ygw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ygw OCA], [http://pdbe.org/1ygw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ygw RCSB], [http://www.ebi.ac.uk/pdbsum/1ygw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1ygw ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1ygw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ygw OCA], [http://pdbe.org/1ygw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ygw RCSB], [http://www.ebi.ac.uk/pdbsum/1ygw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1ygw ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 12:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yg/1ygw_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yg/1ygw_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 29:		Line 29:

	==See Also==		==See Also==
		+	*[[Ribonuclease 3D structures\|Ribonuclease 3D structures]]
	*[[Temp\|Temp]]		*[[Temp\|Temp]]
	== References ==		== References ==
Line 35:		Line 36:
	</StructureSection>		</StructureSection>
	[[Category: Aspoz]]		[[Category: Aspoz]]
		+	[[Category: Large Structures]]
	[[Category: Karimi-Nejad, Y]]		[[Category: Karimi-Nejad, Y]]
	[[Category: Pfeiffer, S]]		[[Category: Pfeiffer, S]]

OCA at 07:02, 29 November 2017

OCA — Wed, 29 Nov 2017 07:02:34 GMT

←Older revision		Revision as of 07:02, 29 November 2017
Line 1:		Line 1:
		+
	==NMR STRUCTURE OF RIBONUCLEASE T1, 34 STRUCTURES==		==NMR STRUCTURE OF RIBONUCLEASE T1, 34 STRUCTURES==
	<StructureSection load='1ygw' size='340' side='right' caption='[[1ygw]], [[NMR_Ensembles_of_Models \| 34 NMR models]]' scene=''>		<StructureSection load='1ygw' size='340' side='right' caption='[[1ygw]], [[NMR_Ensembles_of_Models \| 34 NMR models]]' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RIBONUCLEASE T1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5062 ASPOZ])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RIBONUCLEASE T1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5062 ASPOZ])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribonuclease_T(1) Ribonuclease T(1)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.27.3 3.1.27.3] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribonuclease_T(1) Ribonuclease T(1)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.27.3 3.1.27.3] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ygw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ygw OCA], [http://pdbe.org/1ygw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ygw RCSB], [http://www.ebi.ac.uk/pdbsum/1ygw PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ygw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ygw OCA], [http://pdbe.org/1ygw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ygw RCSB], [http://www.ebi.ac.uk/pdbsum/1ygw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1ygw ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 28:		Line 29:

	==See Also==		==See Also==
-	*[[Ribonuclease\|Ribonuclease]]
	*[[Temp\|Temp]]		*[[Temp\|Temp]]
	== References ==		== References ==

OCA at 09:38, 9 February 2016

OCA — Tue, 09 Feb 2016 09:38:28 GMT

←Older revision		Revision as of 09:38, 9 February 2016
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ygw ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 20:57, 10 September 2015

OCA — Thu, 10 Sep 2015 20:57:45 GMT

←Older revision		Revision as of 20:57, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1ygw' size='340' side='right' caption='[[1ygw]], [[NMR_Ensembles_of_Models \| 34 NMR models]]' scene=''>		<StructureSection load='1ygw' size='340' side='right' caption='[[1ygw]], [[NMR_Ensembles_of_Models \| 34 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1ygw]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Aspergillus_oryzae Aspergillus oryzae~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YGW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YGW FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1ygw]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aspoz Aspoz]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YGW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YGW FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RIBONUCLEASE T1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5062 ~~Aspergillus oryzae~~])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RIBONUCLEASE T1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5062 ASPOZ])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribonuclease_T(1) Ribonuclease T(1)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.27.3 3.1.27.3] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribonuclease_T(1) Ribonuclease T(1)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.27.3 3.1.27.3] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ygw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ygw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ygw RCSB], [http://www.ebi.ac.uk/pdbsum/1ygw PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ygw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ygw OCA], [http://pdbe.org/1ygw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ygw RCSB], [http://www.ebi.ac.uk/pdbsum/1ygw PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1ygw" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
	*[[Ribonuclease\|Ribonuclease]]		*[[Ribonuclease\|Ribonuclease]]
	*[[Temp\|Temp]]		*[[Temp\|Temp]]
-	*[[User:Jaime.Prilusky/Test/tree\|User:Jaime.Prilusky/Test/tree]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Aspergillus oryzae~~]]	+	[[Category: Aspoz]]
	[[Category: Karimi-Nejad, Y]]		[[Category: Karimi-Nejad, Y]]
	[[Category: Pfeiffer, S]]		[[Category: Pfeiffer, S]]

OCA at 09:21, 8 January 2015

OCA — Thu, 08 Jan 2015 09:21:00 GMT

←Older revision		Revision as of 09:21, 8 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1ygw]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aspergillus_oryzae Aspergillus oryzae]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YGW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YGW FirstGlance]. <br>		<table><tr><td colspan='2'>[[1ygw]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aspergillus_oryzae Aspergillus oryzae]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YGW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YGW FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RIBONUCLEASE T1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5062 Aspergillus oryzae])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RIBONUCLEASE T1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5062 Aspergillus oryzae])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribonuclease_T(1) Ribonuclease T(1)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.27.3 3.1.27.3] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribonuclease_T(1) Ribonuclease T(1)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.27.3 3.1.27.3] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ygw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ygw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ygw RCSB], [http://www.ebi.ac.uk/pdbsum/1ygw PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ygw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ygw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ygw RCSB], [http://www.ebi.ac.uk/pdbsum/1ygw PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 28:		Line 28:
	==See Also==		==See Also==
	*[[Ribonuclease\|Ribonuclease]]		*[[Ribonuclease\|Ribonuclease]]
		+	*[[Temp\|Temp]]
		+	*[[User:Jaime.Prilusky/Test/tree\|User:Jaime.Prilusky/Test/tree]]
	== References ==		== References ==
	<references/>		<references/>
Line 33:		Line 35:
	</StructureSection>		</StructureSection>
	[[Category: Aspergillus oryzae]]		[[Category: Aspergillus oryzae]]
-	[[Category: Karimi-Nejad, Y.]]	+	[[Category: Karimi-Nejad, Y]]
-	[[Category: Pfeiffer, S.]]	+	[[Category: Pfeiffer, S]]
-	[[Category: Ruterjans, H.]]	+	[[Category: Ruterjans, H]]
	[[Category: Endonuclease]]		[[Category: Endonuclease]]
	[[Category: Endoribonuclease]]		[[Category: Endoribonuclease]]

OCA at 23:23, 28 September 2014

OCA — Sun, 28 Sep 2014 23:23:29 GMT

←Older revision		Revision as of 23:23, 28 September 2014
Line 1:		Line 1:
-	[[~~Image~~:1ygw.~~png\|left~~\|200px]]	+	==NMR STRUCTURE OF RIBONUCLEASE T1, 34 STRUCTURES==
		+	<StructureSection load='1ygw' size='340' side='right' caption='[[1ygw]], [[NMR_Ensembles_of_Models \| 34 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1ygw]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aspergillus_oryzae Aspergillus oryzae]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YGW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YGW FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RIBONUCLEASE T1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5062 Aspergillus oryzae])</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribonuclease_T(1) Ribonuclease T(1)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.27.3 3.1.27.3] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ygw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ygw OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1ygw RCSB], [http://www.ebi.ac.uk/pdbsum/1ygw PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yg/1ygw_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Limits of NMR structure determination using multidimensional NMR spectroscopy, variable target function calculations and relaxation matrix analysis were explored using the model protein ribonuclease T1 (RNase T1). The enzyme consists of 104 amino acid residues and has a molecular mass of approximately 11 kDa. Primary experimental data comprise 1856 assigned NOE intensities, 493 3J coupling constants and 62 values of amid proton exchange rates. From these data, 2580 distance bounds, 168 allowed ranges for torsional angles and stereospecific assignments for 75% of beta-methylene protons as well as for 80% of diastereotopic methyl groups were derived. Whenever possible, the distance restraints were refined in a relaxation matrix analysis including amid proton exchange data for improvement of lower distance limits. Description of side-chain conformations were based on various models of motional averaging of 3J coupling constants. The final structure ensemble was selected from the starting ensemble comparing the global precision of structures with order parameters derived from 15N relaxation time measurements. Significant differences between the structure of RNase T1 in solution and in the crystal became apparent from a comparison of the two highly resolved structures.

-	~~{{STRUCTURE_1ygw\| PDB=1ygw \| SCENE= }}~~	+	Limits of NMR structure determination using variable target function calculations: ribonuclease T1, a case study.,Pfeiffer S, Karimi-Nejad Y, Ruterjans H J Mol Biol. 1997 Feb 21;266(2):400-23. PMID:9047372<ref>PMID:9047372</ref>

-	~~===NMR STRUCTURE OF RIBONUCLEASE T1~~, ~~34 STRUCTURES===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_9047372}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[1ygw]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Aspergillus_oryzae Aspergillus oryzae]~~. ~~Full experimental information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1YGW OCA].~~	+

	==See Also==		==See Also==
	*[[Ribonuclease\|Ribonuclease]]		*[[Ribonuclease\|Ribonuclease]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:009047372<~~/~~ref~~><~~ref group="xtra">PMID:017154716</ref><references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Aspergillus oryzae]]		[[Category: Aspergillus oryzae]]
	[[Category: Karimi-Nejad, Y.]]		[[Category: Karimi-Nejad, Y.]]

OCA at 13:26, 20 October 2012

OCA — Sat, 20 Oct 2012 13:26:34 GMT

←Older revision		Revision as of 13:26, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[1ygw]] is a 1 chain structure ~~of [[Ribonuclease]]~~ with sequence from [http://en.wikipedia.org/wiki/Aspergillus_oryzae Aspergillus oryzae]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YGW OCA].	+	[[1ygw]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Aspergillus_oryzae Aspergillus oryzae]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YGW OCA].

	==See Also==		==See Also==

OCA: Protected "1ygw" [edit=sysop:move=sysop]

OCA — Thu, 26 Jul 2012 11:58:33 GMT

Protected "1ygw" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:58, 26 July 2012

OCA at 11:58, 26 July 2012

OCA — Thu, 26 Jul 2012 11:58:32 GMT

←Older revision		Revision as of 11:58, 26 July 2012
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1ygw.png\|left\|200px]]		[[Image:1ygw.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1ygw", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1ygw\| PDB=1ygw \| SCENE= }}		{{STRUCTURE_1ygw\| PDB=1ygw \| SCENE= }}

	===NMR STRUCTURE OF RIBONUCLEASE T1, 34 STRUCTURES===		===NMR STRUCTURE OF RIBONUCLEASE T1, 34 STRUCTURES===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_9047372}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 9047372 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_9047372}}		{{ABSTRACT_PUBMED_9047372}}

	==About this Structure==		==About this Structure==
-	~~1YGW~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Aspergillus_oryzae Aspergillus oryzae]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YGW OCA].	+	[[1ygw]] is a 1 chain structure of [[Ribonuclease]] with sequence from [http://en.wikipedia.org/wiki/Aspergillus_oryzae Aspergillus oryzae]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YGW OCA].
		+
		+	==See Also==
		+	*[[Ribonuclease\|Ribonuclease]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~9047372~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:009047372</ref><ref group="xtra">PMID:017154716</ref><references group="xtra"/>
	[[Category: Aspergillus oryzae]]		[[Category: Aspergillus oryzae]]
	[[Category: Karimi-Nejad, Y.]]		[[Category: Karimi-Nejad, Y.]]
Line 33:		Line 24:
	[[Category: Ribonuclease]]		[[Category: Ribonuclease]]
	[[Category: Ribonuclease t1 precursor]]		[[Category: Ribonuclease t1 precursor]]
-	[[Category: Signal]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 08:50:44 2009''