1yl3 - Revision history

OCA: Redirecting to 4v4p

OCA — Wed, 10 Dec 2014 15:07:55 GMT

Redirecting to 4v4p

←Older revision		Revision as of 15:07, 10 December 2014
Line 1:		Line 1:
-	~~==Crystal structure of 70S ribosome with thrS operator and tRNAs. Large subunit. The coordinates for the small subunit are in the pdb entry 1YL4.==~~	+	#REDIRECT [[4v4p]] This PDB entry is obsolete and replaced by 4v4p
-	~~<StructureSection load='1yl3' size='340' side='right' caption='~~[[~~1yl3]], [[Resolution\|resolution]] 5.50Å' scene=''>~~	+
-	~~== Structural highlights ==~~	+
-	~~<table><tr><td colspan='2'>[[1yl3~~]] is a 33 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YL3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YL3 FirstGlance]. <br>	+
-	~~</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yl4\|1yl4]], [[1giy\|1giy]], [[1nkw\|1nkw]]</td></tr>~~	+
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yl3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yl3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1yl3 RCSB], [http://www.ebi.ac.uk/pdbsum/1yl3 PDBsum]</span></td></tr>	+
-	~~<table>~~	+
-	~~== Evolutionary Conservation ==~~	+
-	~~[[Image:Consurf_key_small.gif\|200px\|right]]~~	+
-	~~Check<jmol>~~	+
-	~~<jmolCheckbox>~~	+
-	~~<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yl/1yl3_consurf.spt"</scriptWhenChecked>~~	+
-	~~<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>~~	+
-	~~<text>to colour the structure by Evolutionary Conservation</text>~~	+
-	~~</jmolCheckbox>~~	+
-	~~</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method~~ and ~~the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].~~	+
-	~~<div style="clear:both"></div>~~	+
-	~~<div style="background-color:#fffaf0;">~~	+
-	~~== Publication Abstract from PubMed ==~~	+
-	The ribosome of Thermus thermophilus was cocrystallized with initiator transfer RNA (tRNA) and a structured messenger RNA (mRNA) carrying a translational operator. The path of the mRNA was defined at 5.5 angstroms resolution by comparing it with either the crystal structure of the same ribosomal complex lacking mRNA or with an unstructured mRNA. A precise ribosomal environment positions the operator stem-loop structure perpendicular to the surface of the ribosome on the platform of the 30S subunit. The binding of the operator and of the initiator tRNA occurs on the ribosome with an unoccupied tRNA exit site, which is expected for an initiation complex. The positioning of the regulatory domain of the operator relative to the ribosome elucidates the molecular mechanism by which the bound repressor switches off translation. Our data suggest a general way in which mRNA control elements must be placed on the ribosome to perform their regulatory task.	+
-		+
-	Translational operator of mRNA on the ribosome: how repressor proteins exclude ribosome binding.,Jenner L, Romby P, Rees B, Schulze-Briese C, Springer M, Ehresmann C, Ehresmann B, Moras D, Yusupova G, Yusupov M Science. 2005 Apr 1;308(5718):120-3. PMID:15802605<ref>PMID:15802605</ref>	+
-		+
-	~~From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>~~	+
-	~~</div>~~	+
-		+
-	~~==See Also==~~	+
-	*[[Ribosome 3D structures\|Ribosome 3D structures]]	+
-	~~== References ==~~	+
-	~~<references/>~~	+
-	~~__TOC__~~	+
-	~~</StructureSection>~~	+
-	~~[[Category: Thermus thermophilus]]~~	+
-	~~[[Category: Ehresmann, B.]]~~	+
-	~~[[Category: Ehresmann, C.]]~~	+
-	~~[[Category: Jenner, L.]]~~	+
-	~~[[Category: Moras, D.]]~~	+
-	~~[[Category: Rees, B.]]~~	+
-	~~[[Category: Romby, P.]]~~	+
-	~~[[Category: Schulze-Briese, C.]]~~	+
-	~~[[Category: Springer, M.]]~~	+
-	~~[[Category: Yusupov, M.]]~~	+
-	~~[[Category: Yusupova, G.]]~~	+
-	~~[[Category: Mrna]]~~	+
-	~~[[Category: Ribosome]]~~	+
-	~~[[Category: Translational operator]]~~	+

OCA at 20:33, 29 September 2014

OCA — Mon, 29 Sep 2014 20:33:27 GMT

←Older revision		Revision as of 20:33, 29 September 2014
Line 1:		Line 1:
-	~~{{Large structure}}~~	+	==Crystal structure of 70S ribosome with thrS operator and tRNAs. Large subunit. The coordinates for the small subunit are in the pdb entry 1YL4.==
-	~~{{STRUCTURE_1yl3\| PDB=1yl3 \| SCENE= }}~~	+	<StructureSection load='1yl3' size='340' side='right' caption='[[1yl3]], [[Resolution\|resolution]] 5.50Å' scene=''>
-	===Crystal structure of 70S ribosome with thrS operator and tRNAs. Large subunit. The coordinates for the small subunit are in the pdb entry 1YL4.===	+	== Structural highlights ==
-	~~{{ABSTRACT_PUBMED_15802605}}~~	+	<table><tr><td colspan='2'>[[1yl3]] is a 33 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YL3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YL3 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yl4\|1yl4]], [[1giy\|1giy]], [[1nkw\|1nkw]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yl3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yl3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1yl3 RCSB], [http://www.ebi.ac.uk/pdbsum/1yl3 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yl/1yl3_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The ribosome of Thermus thermophilus was cocrystallized with initiator transfer RNA (tRNA) and a structured messenger RNA (mRNA) carrying a translational operator. The path of the mRNA was defined at 5.5 angstroms resolution by comparing it with either the crystal structure of the same ribosomal complex lacking mRNA or with an unstructured mRNA. A precise ribosomal environment positions the operator stem-loop structure perpendicular to the surface of the ribosome on the platform of the 30S subunit. The binding of the operator and of the initiator tRNA occurs on the ribosome with an unoccupied tRNA exit site, which is expected for an initiation complex. The positioning of the regulatory domain of the operator relative to the ribosome elucidates the molecular mechanism by which the bound repressor switches off translation. Our data suggest a general way in which mRNA control elements must be placed on the ribosome to perform their regulatory task.

-	~~==About this Structure==~~	+	Translational operator of mRNA on the ribosome: how repressor proteins exclude ribosome binding.,Jenner L, Romby P, Rees B, Schulze-Briese C, Springer M, Ehresmann C, Ehresmann B, Moras D, Yusupova G, Yusupov M Science. 2005 Apr 1;308(5718):120-3. PMID:15802605<ref>PMID:15802605</ref>
-	~~[[1yl3]] is a 33 chain structure with sequence from [http~~:~~//en~~.~~wikipedia~~.~~org/wiki/Thermus_thermophilus Thermus thermophilus]~~. ~~Full crystallographic information is available from [http~~:/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1YL3 OCA].~~	+

-	~~==See Also==~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	*[[Ribosomal protein L1\|Ribosomal protein L1]]	+	</div>
-	*[[Ribosomal protein L11\|Ribosomal protein L11]]	+
-	*[[Ribosomal protein L13\|Ribosomal protein L13]]	+
-	*[[Ribosomal protein L14\|Ribosomal protein L14]]	+
-	*[[Ribosomal protein L15\|Ribosomal protein L15]]	+
-	*[[Ribosomal protein L16\|Ribosomal protein L16]]	+
-	*[[Ribosomal protein L17\|Ribosomal protein L17]]	+
-	*[[Ribosomal protein L18\|Ribosomal protein L18]]	+
-	*[[Ribosomal protein L19\|Ribosomal protein L19]]	+
-	*[[Ribosomal protein L2\|Ribosomal protein L2]]	+
-	*[[Ribosomal protein L20\|Ribosomal protein L20]]	+
-	*[[Ribosomal protein L21\|Ribosomal protein L21]]	+
-	*[[Ribosomal protein L22\|Ribosomal protein L22]]	+
-	*[[Ribosomal protein L23\|Ribosomal protein L23]]	+
-	*[[Ribosomal protein L24\|Ribosomal protein L24]]	+
-	*[[Ribosomal protein L25\|Ribosomal protein L25]]	+
-	*[[Ribosomal protein L27\|Ribosomal protein L27]]	+
-	*[[Ribosomal protein L29\|Ribosomal protein L29]]	+
-	*[[Ribosomal protein L3\|Ribosomal protein L3]]	+
-	*[[Ribosomal protein L30\|Ribosomal protein L30]]	+
-	*[[Ribosomal protein L31\|Ribosomal protein L31]]	+
-	*[[Ribosomal protein L32\|Ribosomal protein L32]]	+
-	*[[Ribosomal protein L33\|Ribosomal protein L33]]	+
-	*[[Ribosomal protein L34\|Ribosomal protein L34]]	+
-	*[[Ribosomal protein L35\|Ribosomal protein L35]]	+
-	*[[Ribosomal protein L36\|Ribosomal protein L36]]	+
-	*[[Ribosomal protein L4\|Ribosomal protein L4]]	+
-	*[[Ribosomal protein L5\|Ribosomal protein L5]]	+
-	*[[Ribosomal protein L6\|Ribosomal protein L6]]	+
-	*[[Ribosomal protein L7\|Ribosomal protein L7]]	+
-	*[[Ribosomal protein L9\|Ribosomal protein L9]]	+

-	==~~Reference~~==	+	==See Also==
-	~~<ref group~~=~~"xtra">PMID:015802605~~</~~ref~~><~~references group="xtra"~~/>	+	*[[Ribosome 3D structures\|Ribosome 3D structures]]
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
	[[Category: Ehresmann, B.]]		[[Category: Ehresmann, B.]]

OCA at 08:15, 11 March 2013

OCA — Mon, 11 Mar 2013 08:15:26 GMT

←Older revision		Revision as of 08:15, 11 March 2013
Line 1:		Line 1:
-	~~[[Image:1yl3.png\|left\|200px]]~~	+	{{Large structure}}
-		+
	{{STRUCTURE_1yl3\| PDB=1yl3 \| SCENE= }}		{{STRUCTURE_1yl3\| PDB=1yl3 \| SCENE= }}
-
	===Crystal structure of 70S ribosome with thrS operator and tRNAs. Large subunit. The coordinates for the small subunit are in the pdb entry 1YL4.===		===Crystal structure of 70S ribosome with thrS operator and tRNAs. Large subunit. The coordinates for the small subunit are in the pdb entry 1YL4.===
-
	{{ABSTRACT_PUBMED_15802605}}		{{ABSTRACT_PUBMED_15802605}}

OCA at 15:04, 20 October 2012

OCA — Sat, 20 Oct 2012 15:04:43 GMT

←Older revision		Revision as of 15:04, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[1yl3]] is a 33 chain structure of [[Ribosomal protein L1]], [[Ribosomal protein L11]], [[Ribosomal protein L13]], [[Ribosomal protein L14]], [[Ribosomal protein L15]], [[Ribosomal protein L16]], [[Ribosomal protein L17]], [[Ribosomal protein L18]], [[Ribosomal protein L19]], [[Ribosomal protein L2]], [[Ribosomal protein L20]], [[Ribosomal protein L21]], [[Ribosomal protein L22]], [[Ribosomal protein L23]], [[Ribosomal protein L24]], [[Ribosomal protein L25]], [[Ribosomal protein L27]], [[Ribosomal protein L29]], [[Ribosomal protein L3]], [[Ribosomal protein L30]], [[Ribosomal protein L31]], [[Ribosomal protein L32]], [[Ribosomal protein L33]], [[Ribosomal protein L34]], [[Ribosomal protein L35]], [[Ribosomal protein L36]], [[Ribosomal protein L4]], [[Ribosomal protein L5]], [[Ribosomal protein L6]], [[Ribosomal protein L7]] and [[Ribosomal protein L9]] with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YL3 OCA].	+	[[1yl3]] is a 33 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YL3 OCA].

	==See Also==		==See Also==

OCA at 17:13, 26 July 2012

OCA — Thu, 26 Jul 2012 17:13:59 GMT

←Older revision		Revision as of 17:13, 26 July 2012
Line 1:		Line 1:
	[[Image:1yl3.png\|left\|200px]]		[[Image:1yl3.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1yl3", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1yl3\| PDB=1yl3 \| SCENE= }}		{{STRUCTURE_1yl3\| PDB=1yl3 \| SCENE= }}

	===Crystal structure of 70S ribosome with thrS operator and tRNAs. Large subunit. The coordinates for the small subunit are in the pdb entry 1YL4.===		===Crystal structure of 70S ribosome with thrS operator and tRNAs. Large subunit. The coordinates for the small subunit are in the pdb entry 1YL4.===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_15802605}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 15802605 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_15802605}}		{{ABSTRACT_PUBMED_15802605}}

	==About this Structure==		==About this Structure==
-	[[1yl3]] is a 33 chain structure of [[Ribosomal protein L1]], [[Ribosomal protein L2]], [[Ribosomal protein L3]], [[Ribosomal protein L4]], [[Ribosomal protein L5]], [[Ribosomal protein L6]] ~~and~~ [[Ribosomal protein L7]] with sequence from [http://en.wikipedia.org/wiki/~~Thermus_thermophilus_hb8~~ Thermus thermophilus ~~hb8~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YL3 OCA].	+	[[1yl3]] is a 33 chain structure of [[Ribosomal protein L1]], [[Ribosomal protein L11]], [[Ribosomal protein L13]], [[Ribosomal protein L14]], [[Ribosomal protein L15]], [[Ribosomal protein L16]], [[Ribosomal protein L17]], [[Ribosomal protein L18]], [[Ribosomal protein L19]], [[Ribosomal protein L2]], [[Ribosomal protein L20]], [[Ribosomal protein L21]], [[Ribosomal protein L22]], [[Ribosomal protein L23]], [[Ribosomal protein L24]], [[Ribosomal protein L25]], [[Ribosomal protein L27]], [[Ribosomal protein L29]], [[Ribosomal protein L3]], [[Ribosomal protein L30]], [[Ribosomal protein L31]], [[Ribosomal protein L32]], [[Ribosomal protein L33]], [[Ribosomal protein L34]], [[Ribosomal protein L35]], [[Ribosomal protein L36]], [[Ribosomal protein L4]], [[Ribosomal protein L5]], [[Ribosomal protein L6]], [[Ribosomal protein L7]] and [[Ribosomal protein L9]] with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YL3 OCA].

	==See Also==		==See Also==
-	*[[Ribosomal protein L1]]	+	*[[Ribosomal protein L1\|Ribosomal protein L1]]
-	*[[Ribosomal protein L2]]	+	*[[Ribosomal protein L11\|Ribosomal protein L11]]
-	*[[Ribosomal protein L3]]	+	*[[Ribosomal protein L13\|Ribosomal protein L13]]
-	*[[Ribosomal protein L4]]	+	*[[Ribosomal protein L14\|Ribosomal protein L14]]
-	*[[Ribosomal protein L5]]	+	*[[Ribosomal protein L15\|Ribosomal protein L15]]
-	*[[Ribosomal protein L6]]	+	*[[Ribosomal protein L16\|Ribosomal protein L16]]
-	*[[Ribosomal protein L7]]	+	*[[Ribosomal protein L17\|Ribosomal protein L17]]
		+	*[[Ribosomal protein L18\|Ribosomal protein L18]]
		+	*[[Ribosomal protein L19\|Ribosomal protein L19]]
		+	*[[Ribosomal protein L2\|Ribosomal protein L2]]
		+	*[[Ribosomal protein L20\|Ribosomal protein L20]]
		+	*[[Ribosomal protein L21\|Ribosomal protein L21]]
		+	*[[Ribosomal protein L22\|Ribosomal protein L22]]
		+	*[[Ribosomal protein L23\|Ribosomal protein L23]]
		+	*[[Ribosomal protein L24\|Ribosomal protein L24]]
		+	*[[Ribosomal protein L25\|Ribosomal protein L25]]
		+	*[[Ribosomal protein L27\|Ribosomal protein L27]]
		+	*[[Ribosomal protein L29\|Ribosomal protein L29]]
		+	*[[Ribosomal protein L3\|Ribosomal protein L3]]
		+	*[[Ribosomal protein L30\|Ribosomal protein L30]]
		+	*[[Ribosomal protein L31\|Ribosomal protein L31]]
		+	*[[Ribosomal protein L32\|Ribosomal protein L32]]
		+	*[[Ribosomal protein L33\|Ribosomal protein L33]]
		+	*[[Ribosomal protein L34\|Ribosomal protein L34]]
		+	*[[Ribosomal protein L35\|Ribosomal protein L35]]
		+	*[[Ribosomal protein L36\|Ribosomal protein L36]]
		+	*[[Ribosomal protein L4\|Ribosomal protein L4]]
		+	*[[Ribosomal protein L5\|Ribosomal protein L5]]
		+	*[[Ribosomal protein L6\|Ribosomal protein L6]]
		+	*[[Ribosomal protein L7\|Ribosomal protein L7]]
		+	*[[Ribosomal protein L9\|Ribosomal protein L9]]

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15802605~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015802605</ref><references group="xtra"/>
-	[[Category: Thermus thermophilus ~~hb8~~]]	+	[[Category: Thermus thermophilus]]
	[[Category: Ehresmann, B.]]		[[Category: Ehresmann, B.]]
	[[Category: Ehresmann, C.]]		[[Category: Ehresmann, C.]]

OCA: Protected "1yl3" [edit=sysop:move=sysop]

OCA — Mon, 27 Dec 2010 00:15:10 GMT

Protected "1yl3" [edit=sysop:move=sysop]

←Older revision

Revision as of 00:15, 27 December 2010

OCA at 00:15, 27 December 2010

OCA — Mon, 27 Dec 2010 00:15:09 GMT

←Older revision		Revision as of 00:15, 27 December 2010
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1yl3.png\|left\|200px]]		[[Image:1yl3.png\|left\|200px]]

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	==About this Structure==		==About this Structure==
-	~~1YL3~~ is a 33 ~~chains~~ structure of ~~sequences~~ from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YL3 OCA].	+	[[1yl3]] is a 33 chain structure of [[Ribosomal protein L1]], [[Ribosomal protein L2]], [[Ribosomal protein L3]], [[Ribosomal protein L4]], [[Ribosomal protein L5]], [[Ribosomal protein L6]] and [[Ribosomal protein L7]] with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YL3 OCA].
		+
		+	==See Also==
		+	*[[Ribosomal protein L1]]
		+	*[[Ribosomal protein L2]]
		+	*[[Ribosomal protein L3]]
		+	*[[Ribosomal protein L4]]
		+	*[[Ribosomal protein L5]]
		+	*[[Ribosomal protein L6]]
		+	*[[Ribosomal protein L7]]

	==Reference==		==Reference==
Line 38:		Line 46:
	[[Category: Ribosome]]		[[Category: Ribosome]]
	[[Category: Translational operator]]		[[Category: Translational operator]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 22 10:40:47 2009''

OCA at 07:40, 22 April 2009

OCA — Wed, 22 Apr 2009 07:40:48 GMT

←Older revision		Revision as of 07:40, 22 April 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	1YL3 is a 34 chains structure of sequences from [http://en.wikipedia.org/wiki/~~Thermus_thermophilus~~ Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YL3 OCA].	+	1YL3 is a 33 chains structure of sequences from [http://en.wikipedia.org/wiki/Thermus_thermophilus_hb8 Thermus thermophilus hb8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YL3 OCA].

	==Reference==		==Reference==
	<ref group="xtra">PMID:15802605</ref><references group="xtra"/>		<ref group="xtra">PMID:15802605</ref><references group="xtra"/>
-	[[Category: Thermus thermophilus]]	+	[[Category: Thermus thermophilus hb8]]
	[[Category: Ehresmann, B.]]		[[Category: Ehresmann, B.]]
	[[Category: Ehresmann, C.]]		[[Category: Ehresmann, C.]]
Line 39:		Line 39:
	[[Category: Translational operator]]		[[Category: Translational operator]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Tue Feb 17 12~~:36:41 2009''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 22 10:40:47 2009''

OCA at 10:36, 17 February 2009

OCA — Tue, 17 Feb 2009 10:36:42 GMT

←Older revision		Revision as of 10:36, 17 February 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	1YL3 is a ~~[[Protein complex]]~~ structure of sequences from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YL3 OCA].	+	1YL3 is a 34 chains structure of sequences from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YL3 OCA].

	==Reference==		==Reference==
-	Translational operator of mRNA on the ribosome: how repressor proteins exclude ribosome binding., Jenner L, Romby P, Rees B, Schulze-Briese C, Springer M, Ehresmann C, Ehresmann B, Moras D, Yusupova G, Yusupov M, Science. 2005 Apr 1;308(5718):120-3. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/15802605 15802605]~~	+	<ref group="xtra">PMID:15802605</ref><references group="xtra"/>
-	~~[[Category: Protein complex]]~~	+
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
	[[Category: Ehresmann, B.]]		[[Category: Ehresmann, B.]]
Line 40:		Line 39:
	[[Category: Translational operator]]		[[Category: Translational operator]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Jul 28 16~~:58:~~53 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 12:36:41 2009''

OCA at 13:58, 28 July 2008

OCA — Mon, 28 Jul 2008 13:58:54 GMT

←Older revision		Revision as of 13:58, 28 July 2008
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-	[[Image:1yl3.~~gif~~\|left\|200px]]	+	{{Seed}}
		+	[[Image:1yl3.png\|left\|200px]]

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	{{STRUCTURE_1yl3\| PDB=1yl3 \| SCENE= }}		{{STRUCTURE_1yl3\| PDB=1yl3 \| SCENE= }}

-	~~'''~~Crystal structure of 70S ribosome with thrS operator and tRNAs. Large subunit. The coordinates for the small subunit are in the pdb entry 1YL4.~~'''~~	+	===Crystal structure of 70S ribosome with thrS operator and tRNAs. Large subunit. The coordinates for the small subunit are in the pdb entry 1YL4.===


-	~~==Overview==~~	+	<!--
-	The ~~ribosome of Thermus thermophilus was cocrystallized with initiator transfer RNA (tRNA) and a structured messenger RNA (mRNA) carrying a translational operator. The path of~~ the mRNA was defined at 5.5 angstroms resolution by comparing it with either the crystal structure of the same ribosomal complex lacking mRNA or with an unstructured mRNA. A precise ribosomal environment positions the operator stem-loop structure perpendicular to the ~~surface of the ribosome~~ on ~~the platform of the 30S subunit~~. ~~The binding of the operator and of the initiator tRNA occurs on the ribosome with an unoccupied tRNA exit site~~, ~~which~~ is ~~expected for an initiation complex. The positioning of~~ the regulatory domain of the operator relative to the ribosome elucidates the molecular mechanism by which the bound repressor switches off translation. Our data suggest a general way in which mRNA control elements must be placed on the ribosome to perform their regulatory task.	+	The line below this paragraph, {{ABSTRACT_PUBMED_15802605}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 15802605 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_15802605}}

	==About this Structure==		==About this Structure==
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	[[Category: Ribosome]]		[[Category: Ribosome]]
	[[Category: Translational operator]]		[[Category: Translational operator]]
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sat May 3~~ 16:27:22 2008''	+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 16:58:53 2008''