1yq5 - Revision history

OCA at 07:15, 9 August 2023

OCA — Wed, 09 Aug 2023 07:15:12 GMT

←Older revision		Revision as of 07:15, 9 August 2023
Line 3:		Line 3:
	<StructureSection load='1yq5' size='340' side='right'caption='[[1yq5]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1yq5' size='340' side='right'caption='[[1yq5]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1yq5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Bpprd Bpprd~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YQ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YQ5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1yq5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterobacteria_phage_PRD1 Enterobacteria phage PRD1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YQ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YQ5 FirstGlance]. <br>
-	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=MSE:SELENOMETHIONINE'>MSE</scene~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[1yq6\|1yq6]], [[1yq8\|1yq8]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yq5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yq5 OCA], [https://pdbe.org/1yq5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yq5 RCSB], [https://www.ebi.ac.uk/pdbsum/1yq5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yq5 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yq5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yq5 OCA], [https://pdbe.org/1yq5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yq5 RCSB], [https://www.ebi.ac.uk/pdbsum/1yq5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yq5 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/P5_BPPRD P5_BPPRD]] In association with P31 and P2, forms the spike complexes located at the 5-fold vertices of the capsid. Essential for viral infectivity.<ref>PMID:10956048</ref>	+	[https://www.uniprot.org/uniprot/P5_BPPRD P5_BPPRD] In association with P31 and P2, forms the spike complexes located at the 5-fold vertices of the capsid. Essential for viral infectivity.<ref>PMID:10956048</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 23:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bpprd~~]]	+	[[Category: Enterobacteria phage PRD1]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Bamford~~, D H~~]]	+	[[Category: Bamford DH]]
-	[[Category: Goldman, A]]	+	[[Category: Goldman A]]
-	[[Category: Huiskonen~~, J T~~]]	+	[[Category: Huiskonen JT]]
-	[[Category: Merckel~~, M C~~]]	+	[[Category: Merckel MC]]
-	[[Category: Tuma, R]]	+	[[Category: Tuma R]]
-	~~[[Category: Beta-jelly-roll]]~~	+
-	~~[[Category: Beta-spiral]]~~	+
-	~~[[Category: Viral protein~~]]	+

OCA at 16:31, 3 November 2021

OCA — Wed, 03 Nov 2021 16:31:34 GMT

←Older revision		Revision as of 16:31, 3 November 2021
Line 3:		Line 3:
	<StructureSection load='1yq5' size='340' side='right'caption='[[1yq5]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1yq5' size='340' side='right'caption='[[1yq5]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1yq5]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Bpprd Bpprd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YQ5 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1YQ5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1yq5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bpprd Bpprd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YQ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YQ5 FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yq6\|1yq6]], [[1yq8\|1yq8]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1yq6\|1yq6]], [[1yq8\|1yq8]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1yq5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yq5 OCA], [~~http~~://pdbe.org/1yq5 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1yq5 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1yq5 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1yq5 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yq5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yq5 OCA], [https://pdbe.org/1yq5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yq5 RCSB], [https://www.ebi.ac.uk/pdbsum/1yq5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yq5 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/P5_BPPRD P5_BPPRD]] In association with P31 and P2, forms the spike complexes located at the 5-fold vertices of the capsid. Essential for viral infectivity.<ref>PMID:10956048</ref>	+	[[https://www.uniprot.org/uniprot/P5_BPPRD P5_BPPRD]] In association with P31 and P2, forms the spike complexes located at the 5-fold vertices of the capsid. Essential for viral infectivity.<ref>PMID:10956048</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 17:26, 29 January 2020

OCA — Wed, 29 Jan 2020 17:26:24 GMT

←Older revision		Revision as of 17:26, 29 January 2020
Line 1:		Line 1:

	==PRD1 vertex protein P5==		==PRD1 vertex protein P5==
-	<StructureSection load='1yq5' size='340' side='right' caption='[[1yq5]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='1yq5' size='340' side='right'caption='[[1yq5]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1yq5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpprd Bpprd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YQ5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YQ5 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1yq5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpprd Bpprd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YQ5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YQ5 FirstGlance]. <br>
Line 24:		Line 24:
	</StructureSection>		</StructureSection>
	[[Category: Bpprd]]		[[Category: Bpprd]]
		+	[[Category: Large Structures]]
	[[Category: Bamford, D H]]		[[Category: Bamford, D H]]
	[[Category: Goldman, A]]		[[Category: Goldman, A]]

OCA at 07:06, 25 April 2018

OCA — Wed, 25 Apr 2018 07:06:30 GMT

←Older revision		Revision as of 07:06, 25 April 2018
Line 1:		Line 1:
		+
	==PRD1 vertex protein P5==		==PRD1 vertex protein P5==
	<StructureSection load='1yq5' size='340' side='right' caption='[[1yq5]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1yq5' size='340' side='right' caption='[[1yq5]], [[Resolution\|resolution]] 2.00Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yq6\|1yq6]], [[1yq8\|1yq8]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yq6\|1yq6]], [[1yq8\|1yq8]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yq5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yq5 OCA], [http://pdbe.org/1yq5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yq5 RCSB], [http://www.ebi.ac.uk/pdbsum/1yq5 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yq5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yq5 OCA], [http://pdbe.org/1yq5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yq5 RCSB], [http://www.ebi.ac.uk/pdbsum/1yq5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1yq5 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 05:08, 11 September 2015

OCA — Fri, 11 Sep 2015 05:08:04 GMT

←Older revision		Revision as of 05:08, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1yq5' size='340' side='right' caption='[[1yq5]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1yq5' size='340' side='right' caption='[[1yq5]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1yq5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Enterobacteria_phage_prd1 Enterobacteria phage prd1~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YQ5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YQ5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1yq5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpprd Bpprd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YQ5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YQ5 FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yq6\|1yq6]], [[1yq8\|1yq8]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yq6\|1yq6]], [[1yq8\|1yq8]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yq5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yq5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1yq5 RCSB], [http://www.ebi.ac.uk/pdbsum/1yq5 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yq5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yq5 OCA], [http://pdbe.org/1yq5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yq5 RCSB], [http://www.ebi.ac.uk/pdbsum/1yq5 PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/P5_BPPRD P5_BPPRD]] In association with P31 and P2, forms the spike complexes located at the 5-fold vertices of the capsid. Essential for viral infectivity.<ref>PMID:10956048</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 15:		Line 17:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1yq5" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Enterobacteria phage prd1~~]]	+	[[Category: Bpprd]]
	[[Category: Bamford, D H]]		[[Category: Bamford, D H]]
	[[Category: Goldman, A]]		[[Category: Goldman, A]]

OCA at 22:20, 3 January 2015

OCA — Sat, 03 Jan 2015 22:20:14 GMT

←Older revision		Revision as of 22:20, 3 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1yq5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_prd1 Enterobacteria phage prd1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YQ5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YQ5 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1yq5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_prd1 Enterobacteria phage prd1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YQ5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YQ5 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yq6\|1yq6]], [[1yq8\|1yq8]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yq6\|1yq6]], [[1yq8\|1yq8]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yq5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yq5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1yq5 RCSB], [http://www.ebi.ac.uk/pdbsum/1yq5 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yq5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yq5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1yq5 RCSB], [http://www.ebi.ac.uk/pdbsum/1yq5 PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 20:		Line 20:
	</StructureSection>		</StructureSection>
	[[Category: Enterobacteria phage prd1]]		[[Category: Enterobacteria phage prd1]]
-	[[Category: Bamford, D H.]]	+	[[Category: Bamford, D H]]
-	[[Category: Goldman, A.]]	+	[[Category: Goldman, A]]
-	[[Category: Huiskonen, J T.]]	+	[[Category: Huiskonen, J T]]
-	[[Category: Merckel, M C.]]	+	[[Category: Merckel, M C]]
-	[[Category: Tuma, R.]]	+	[[Category: Tuma, R]]
	[[Category: Beta-jelly-roll]]		[[Category: Beta-jelly-roll]]
	[[Category: Beta-spiral]]		[[Category: Beta-spiral]]
	[[Category: Viral protein]]		[[Category: Viral protein]]

OCA at 07:11, 9 June 2014

OCA — Mon, 09 Jun 2014 07:11:31 GMT

←Older revision		Revision as of 07:11, 9 June 2014
Line 1:		Line 1:
-	[[~~Image:~~1yq5.~~png~~\|~~left~~\|~~200px~~]]	+	==PRD1 vertex protein P5==
		+	<StructureSection load='1yq5' size='340' side='right' caption='[[1yq5]], [[Resolution\|resolution]] 2.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1yq5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_prd1 Enterobacteria phage prd1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YQ5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YQ5 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yq6\|1yq6]], [[1yq8\|1yq8]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yq5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yq5 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1yq5 RCSB], [http://www.ebi.ac.uk/pdbsum/1yq5 PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Comparisons of bacteriophage PRD1 and adenovirus protein structures and virion architectures have been instrumental in unraveling an evolutionary relationship and have led to a proposal of a phylogeny-based virus classification. The structure of the PRD1 spike protein P5 provides further insight into the evolution of viral proteins. The crystallized P5 fragment comprises two structural domains: a globular knob and a fibrous shaft. The head folds into a ten-stranded jelly roll beta barrel, which is structurally related to the tumor necrosis factor (TNF) and the PRD1 coat protein domains. The shaft domain is a structural counterpart to the adenovirus spike shaft. The structural relationships between PRD1, TNF, and adenovirus proteins suggest that the vertex proteins may have originated from an ancestral TNF-like jelly roll coat protein via a combination of gene duplication and deletion.

-	~~{{STRUCTURE_1yq5\| PDB=1yq5 \| SCENE= }}~~	+	The structure of the bacteriophage PRD1 spike sheds light on the evolution of viral capsid architecture.,Merckel MC, Huiskonen JT, Bamford DH, Goldman A, Tuma R Mol Cell. 2005 Apr 15;18(2):161-70. PMID:15837420<ref>PMID:15837420</ref>

-	~~===PRD1 vertex protein P5===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_15837420}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1yq5]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Enterobacteria_phage_prd1 Enterobacteria phage prd1]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1YQ5 OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:015837420<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Enterobacteria phage prd1]]		[[Category: Enterobacteria phage prd1]]
	[[Category: Bamford, D H.]]		[[Category: Bamford, D H.]]

OCA: Protected "1yq5" [edit=sysop:move=sysop]

OCA — Tue, 14 Aug 2012 16:56:33 GMT

Protected "1yq5" [edit=sysop:move=sysop]

←Older revision

Revision as of 16:56, 14 August 2012

OCA at 16:56, 14 August 2012

OCA — Tue, 14 Aug 2012 16:56:31 GMT

←Older revision		Revision as of 16:56, 14 August 2012
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1yq5.png\|left\|200px]]		[[Image:1yq5.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1yq5", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1yq5\| PDB=1yq5 \| SCENE= }}		{{STRUCTURE_1yq5\| PDB=1yq5 \| SCENE= }}

	===PRD1 vertex protein P5===		===PRD1 vertex protein P5===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_15837420}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 15837420 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_15837420}}		{{ABSTRACT_PUBMED_15837420}}

	==About this Structure==		==About this Structure==
-	~~1YQ5 is a~~ [[~~Single protein~~]] structure of sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_prd1 Enterobacteria phage prd1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YQ5 OCA].	+	[[1yq5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_prd1 Enterobacteria phage prd1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YQ5 OCA].

	==Reference==		==Reference==
-	~~The structure of the bacteriophage PRD1 spike sheds light on the evolution of viral capsid architecture., Merckel MC, Huiskonen JT, Bamford DH, Goldman A, Tuma R, Mol Cell. 2005 Apr 15;18(2):161-70.~~ PMID:~~[http://www.ncbi.nlm.nih.gov~~/~~pubmed~~/~~15837420 15837420]~~	+	<ref group="xtra">PMID:015837420</ref><references group="xtra"/>
	[[Category: Enterobacteria phage prd1]]		[[Category: Enterobacteria phage prd1]]
-	[[Category: Single protein]]
	[[Category: Bamford, D H.]]		[[Category: Bamford, D H.]]
	[[Category: Goldman, A.]]		[[Category: Goldman, A.]]
Line 33:		Line 20:
	[[Category: Beta-jelly-roll]]		[[Category: Beta-jelly-roll]]
	[[Category: Beta-spiral]]		[[Category: Beta-spiral]]
-		+	[[Category: Viral protein]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Mon Jul 28 20:49:56 2008''~~	+

OCA at 17:49, 28 July 2008

OCA — Mon, 28 Jul 2008 17:49:57 GMT

←Older revision		Revision as of 17:49, 28 July 2008
Line 1:		Line 1:
-	[[Image:1yq5.~~gif~~\|left\|200px]]	+	{{Seed}}
		+	[[Image:1yq5.png\|left\|200px]]

	<!--		<!--
Line 9:		Line 10:
	{{STRUCTURE_1yq5\| PDB=1yq5 \| SCENE= }}		{{STRUCTURE_1yq5\| PDB=1yq5 \| SCENE= }}

-	~~'''~~PRD1 vertex protein P5~~'''~~	+	===PRD1 vertex protein P5===


-	~~==Overview==~~	+	<!--
-	Comparisons of bacteriophage PRD1 and adenovirus protein structures and virion architectures have been instrumental in unraveling an evolutionary relationship and have led to a proposal of a phylogeny-based virus classification. The ~~structure of~~ the ~~PRD1 spike protein P5 provides further insight into~~ the ~~evolution of viral proteins. The crystallized P5 fragment comprises two structural domains~~: ~~a globular knob and a fibrous shaft~~. ~~The head folds into a ten-stranded jelly roll beta barrel~~, ~~which~~ is ~~structurally related to~~ the ~~tumor necrosis factor (TNF) and the PRD1 coat protein domains~~. The shaft domain is a structural counterpart to the adenovirus spike shaft. The structural relationships between PRD1, TNF, and adenovirus proteins suggest that the vertex proteins may have originated from an ancestral TNF-~~like jelly roll coat protein via a combination of gene duplication and deletion.~~	+	The line below this paragraph, {{ABSTRACT_PUBMED_15837420}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 15837420 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_15837420}}

	==About this Structure==		==About this Structure==
Line 29:		Line 33:
	[[Category: Beta-jelly-roll]]		[[Category: Beta-jelly-roll]]
	[[Category: Beta-spiral]]		[[Category: Beta-spiral]]
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sat May 3 16~~:38:16 2008''	+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 20:49:56 2008''