1yr0 - Revision history

OCA at 06:20, 3 April 2024

OCA — Wed, 03 Apr 2024 06:20:29 GMT

←Older revision		Revision as of 06:20, 3 April 2024
Line 3:		Line 3:
	<StructureSection load='1yr0' size='340' side='right'caption='[[1yr0]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1yr0' size='340' side='right'caption='[[1yr0]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1yr0]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Agrfc Agrfc~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YR0 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1YR0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1yr0]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_fabrum_str._C58 Agrobacterium fabrum str. C58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YR0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YR0 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">AGR_C_1654 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 AGRFC])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yr0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yr0 OCA], [https://pdbe.org/1yr0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yr0 RCSB], [https://www.ebi.ac.uk/pdbsum/1yr0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yr0 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1yr0 TOPSAN]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1yr0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yr0 OCA], [~~http~~://pdbe.org/1yr0 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1yr0 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1yr0 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1yr0 ProSAT], [~~http~~://www.topsan.org/Proteins/NYSGXRC/1yr0 TOPSAN]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A9CJR4_AGRFC A9CJR4_AGRFC]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Agrfc~~]]	+	[[Category: Agrobacterium fabrum str. C58]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Burley~~, S K]]~~	+	[[Category: Burley SK]]
-	~~[[Category: Structural genomic]]~~	+
-	~~[[Category: Agr_c_1654]]~~	+
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]~~	+
-	~~[[Category: Phosphinothricin acetyltransferase]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: T1682]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 08:50, 20 January 2021

OCA — Wed, 20 Jan 2021 08:50:44 GMT

←Older revision		Revision as of 08:50, 20 January 2021
Line 1:		Line 1:

	==Crystal structure of phosphinothricin acetyltransferase from agrobacterium tumefaciens==		==Crystal structure of phosphinothricin acetyltransferase from agrobacterium tumefaciens==
-	<StructureSection load='1yr0' size='340' side='right' caption='[[1yr0]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='1yr0' size='340' side='right'caption='[[1yr0]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1yr0]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrfc Agrfc]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YR0 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1YR0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1yr0]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrfc Agrfc]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YR0 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1YR0 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AGR_C_1654 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 AGRFC])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AGR_C_1654 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 AGRFC])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1yr0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yr0 OCA], [http://pdbe.org/1yr0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yr0 RCSB], [http://www.ebi.ac.uk/pdbsum/1yr0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1yr0 ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/1yr0 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1yr0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yr0 OCA], [http://pdbe.org/1yr0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yr0 RCSB], [http://www.ebi.ac.uk/pdbsum/1yr0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1yr0 ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/1yr0 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 22:		Line 22:
	</StructureSection>		</StructureSection>
	[[Category: Agrfc]]		[[Category: Agrfc]]
		+	[[Category: Large Structures]]
	[[Category: Burley, S K]]		[[Category: Burley, S K]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

OCA at 06:41, 25 April 2018

OCA — Wed, 25 Apr 2018 06:41:54 GMT

←Older revision		Revision as of 06:41, 25 April 2018
Line 1:		Line 1:
		+
	==Crystal structure of phosphinothricin acetyltransferase from agrobacterium tumefaciens==		==Crystal structure of phosphinothricin acetyltransferase from agrobacterium tumefaciens==
	<StructureSection load='1yr0' size='340' side='right' caption='[[1yr0]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1yr0' size='340' side='right' caption='[[1yr0]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1yr0]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Agrt5 Agrt5~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YR0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YR0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1yr0]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrfc Agrfc]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YR0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YR0 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AGR_C_1654 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 ~~AGRT5~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AGR_C_1654 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 AGRFC])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yr0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yr0 OCA], [http://pdbe.org/1yr0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yr0 RCSB], [http://www.ebi.ac.uk/pdbsum/1yr0 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1yr0 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yr0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yr0 OCA], [http://pdbe.org/1yr0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yr0 RCSB], [http://www.ebi.ac.uk/pdbsum/1yr0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1yr0 ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/1yr0 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yr/1yr0_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yr/1yr0_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 20:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Agrt5~~]]	+	[[Category: Agrfc]]
	[[Category: Burley, S K]]		[[Category: Burley, S K]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

OCA at 16:54, 9 February 2016

OCA — Tue, 09 Feb 2016 16:54:20 GMT

←Older revision		Revision as of 16:54, 9 February 2016
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yr0 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 00:16, 11 September 2015

OCA — Fri, 11 Sep 2015 00:16:25 GMT

←Older revision		Revision as of 00:16, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1yr0' size='340' side='right' caption='[[1yr0]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='1yr0' size='340' side='right' caption='[[1yr0]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1yr0]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Agrobacterium_tumefaciens_str._c58 Agrobacterium tumefaciens str. c58~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YR0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YR0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1yr0]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrt5 Agrt5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YR0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YR0 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AGR_C_1654 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 ~~Agrobacterium tumefaciens str. C58~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AGR_C_1654 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 AGRT5])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yr0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yr0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1yr0 RCSB], [http://www.ebi.ac.uk/pdbsum/1yr0 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1yr0 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yr0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yr0 OCA], [http://pdbe.org/1yr0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yr0 RCSB], [http://www.ebi.ac.uk/pdbsum/1yr0 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1yr0 TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Agrobacterium tumefaciens str. c58~~]]	+	[[Category: Agrt5]]
	[[Category: Burley, S K]]		[[Category: Burley, S K]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

OCA at 12:37, 6 November 2014

OCA — Thu, 06 Nov 2014 12:37:44 GMT

←Older revision		Revision as of 12:37, 6 November 2014
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Agrobacterium tumefaciens str. c58]]
		+	[[Category: Burley, S K]]
		+	[[Category: Structural genomic]]
	[[Category: Agr_c_1654]]		[[Category: Agr_c_1654]]
		+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
	[[Category: Phosphinothricin acetyltransferase]]		[[Category: Phosphinothricin acetyltransferase]]
		+	[[Category: PSI, Protein structure initiative]]
	[[Category: T1682]]		[[Category: T1682]]
		+	[[Category: Transferase]]

OCA at 11:57, 6 November 2014

OCA — Thu, 06 Nov 2014 11:57:31 GMT

←Older revision		Revision as of 11:57, 6 November 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1yr0]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens_str._c58 Agrobacterium tumefaciens str. c58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YR0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YR0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1yr0]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens_str._c58 Agrobacterium tumefaciens str. c58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YR0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YR0 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AGR_C_1654 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 Agrobacterium tumefaciens str. C58])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AGR_C_1654 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 Agrobacterium tumefaciens str. C58])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yr0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yr0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1yr0 RCSB], [http://www.ebi.ac.uk/pdbsum/1yr0 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1yr0 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yr0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yr0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1yr0 RCSB], [http://www.ebi.ac.uk/pdbsum/1yr0 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1yr0 TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Agrobacterium tumefaciens str. c58]]
-	[[Category: Burley, S K.]]
-	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
	[[Category: Agr_c_1654]]		[[Category: Agr_c_1654]]
-	[[Category: New york sgx research center for structural genomic]]
-	[[Category: Nysgxrc]]
	[[Category: Phosphinothricin acetyltransferase]]		[[Category: Phosphinothricin acetyltransferase]]
-	[[Category: Protein structure initiative]]
-	[[Category: Psi]]
-	[[Category: Structural genomic]]
	[[Category: T1682]]		[[Category: T1682]]
-	[[Category: Transferase]]

OCA at 09:23, 3 October 2014

OCA — Fri, 03 Oct 2014 09:23:48 GMT

←Older revision		Revision as of 09:23, 3 October 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_1yr0\| PDB=1yr0 \| SCENE= }}~~	+	==Crystal structure of phosphinothricin acetyltransferase from agrobacterium tumefaciens==
-	===Crystal structure of phosphinothricin acetyltransferase from agrobacterium tumefaciens===	+	<StructureSection load='1yr0' size='340' side='right' caption='[[1yr0]], [[Resolution\|resolution]] 2.00Å' scene=''>
-		+	== Structural highlights ==
-	==~~About this Structure~~==	+	<table><tr><td colspan='2'>[[1yr0]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens_str._c58 Agrobacterium tumefaciens str. c58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YR0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YR0 FirstGlance]. <br>
-	[[1yr0]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens_str._c58 Agrobacterium tumefaciens str. c58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YR0 OCA].	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	==~~Reference~~==	+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AGR_C_1654 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176299 Agrobacterium tumefaciens str. C58])</td></tr>
-	<~~ref group~~="~~xtra~~">~~PMID~~:~~017253769~~</~~ref~~><~~references group~~="~~xtra~~"/><~~references~~/>	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yr0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yr0 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1yr0 RCSB], [http://www.ebi.ac.uk/pdbsum/1yr0 PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1yr0 TOPSAN]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yr/1yr0_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Agrobacterium tumefaciens str. c58]]		[[Category: Agrobacterium tumefaciens str. c58]]
	[[Category: Burley, S K.]]		[[Category: Burley, S K.]]

OCA at 08:45, 23 April 2014

OCA — Wed, 23 Apr 2014 08:45:50 GMT

←Older revision		Revision as of 08:45, 23 April 2014
Line 1:		Line 1:
-	[[Image:1yr0.png\|left\|200px]]
-
-	<!--
-	The line below this paragraph, containing "STRUCTURE_1yr0", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1yr0\| PDB=1yr0 \| SCENE= }}		{{STRUCTURE_1yr0\| PDB=1yr0 \| SCENE= }}
-
	===Crystal structure of phosphinothricin acetyltransferase from agrobacterium tumefaciens===		===Crystal structure of phosphinothricin acetyltransferase from agrobacterium tumefaciens===
-
-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_017253769}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 017253769 is the PubMed ID number.
-	-->
-	{{ABSTRACT_PUBMED_017253769}}

	==About this Structure==		==About this Structure==
-	[[1yr0]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens_str. Agrobacterium tumefaciens str.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YR0 OCA].	+	[[1yr0]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrobacterium_tumefaciens_str._c58 Agrobacterium tumefaciens str. c58]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YR0 OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:017253769</ref><references group="xtra"/>	+	<ref group="xtra">PMID:017253769</ref><references group="xtra"/><references/>
-	[[Category: Agrobacterium tumefaciens str.]]	+	[[Category: Agrobacterium tumefaciens str. c58]]
	[[Category: Burley, S K.]]		[[Category: Burley, S K.]]
	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]		[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]

OCA: Protected "1yr0" [edit=sysop:move=sysop]

OCA — Wed, 16 Nov 2011 10:25:22 GMT

Protected "1yr0" [edit=sysop:move=sysop]

←Older revision

Revision as of 10:25, 16 November 2011