1yx3 - Revision history

OCA at 08:07, 15 May 2024

OCA — Wed, 15 May 2024 08:07:12 GMT

←Older revision		Revision as of 08:07, 15 May 2024
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	==NMR structure of Allochromatium vinosum DsrC: Northeast Structural Genomics Consortium target OP4==		==NMR structure of Allochromatium vinosum DsrC: Northeast Structural Genomics Consortium target OP4==
-	<StructureSection load='1yx3' size='340' side='right'caption='[[1yx3~~]], [[NMR_Ensembles_of_Models \| 20 NMR models~~]]' scene=''>	+	<StructureSection load='1yx3' size='340' side='right'caption='[[1yx3]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1yx3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"bacillus_vinosus"_(ehrenberg_1838)_trevisan_1889 "bacillus vinosus" (ehrenberg 1838) trevisan 1889~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YX3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YX3 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1yx3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Allochromatium_vinosum Allochromatium vinosum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YX3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YX3 FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>DsrC ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~1049~~ "~~Bacillus vinosus~~" ~~(Ehrenberg 1838) Trevisan 1889])~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yx3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yx3 OCA], [https://pdbe.org/1yx3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yx3 RCSB], [https://www.ebi.ac.uk/pdbsum/1yx3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yx3 ProSAT], [https://www.topsan.org/Proteins/NESGC/1yx3 TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yx3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yx3 OCA], [https://pdbe.org/1yx3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yx3 RCSB], [https://www.ebi.ac.uk/pdbsum/1yx3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yx3 ProSAT], [https://www.topsan.org/Proteins/NESGC/1yx3 TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/O87899_ALLVI O87899_ALLVI]] Part of a sulfur-relay system.[PIRNR:PIRNR006223]	+	[https://www.uniprot.org/uniprot/O87899_ALLVI O87899_ALLVI] Part of a sulfur-relay system.[PIRNR:PIRNR006223]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 32:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Allochromatium vinosum]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Cort~~, J R~~]]	+	[[Category: Cort JR]]
-	[[Category: Dahl, C]]	+	[[Category: Dahl C]]
-	[[Category: Kennedy~~, M A~~]]	+	[[Category: Kennedy MA]]
-	[[Category: Montelione~~, G T]]~~	+	[[Category: Montelione GT]]
-	~~[[Category: Structural genomic]]~~	+
-	~~[[Category: Dissimilatory sulfite reductase]]~~	+
-	~~[[Category: Dsrc]]~~	+
-	~~[[Category: Dsvc]]~~	+
-	~~[[Category: Gamma subunit]]~~	+
-	~~[[Category: Nesg]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 07:14, 2 March 2022

OCA — Wed, 02 Mar 2022 07:14:42 GMT

←Older revision		Revision as of 07:14, 2 March 2022
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	<StructureSection load='1yx3' size='340' side='right'caption='[[1yx3]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='1yx3' size='340' side='right'caption='[[1yx3]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1yx3]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"bacillus_vinosus"_(ehrenberg_1838)_trevisan_1889 "bacillus vinosus" (ehrenberg 1838) trevisan 1889]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YX3 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1YX3 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1yx3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_vinosus"_(ehrenberg_1838)_trevisan_1889 "bacillus vinosus" (ehrenberg 1838) trevisan 1889]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YX3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YX3 FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DsrC ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1049 "Bacillus vinosus" (Ehrenberg 1838) Trevisan 1889])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DsrC ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1049 "Bacillus vinosus" (Ehrenberg 1838) Trevisan 1889])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1yx3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yx3 OCA], [~~http~~://pdbe.org/1yx3 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1yx3 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1yx3 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1yx3 ProSAT], [~~http~~://www.topsan.org/Proteins/NESGC/1yx3 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yx3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yx3 OCA], [https://pdbe.org/1yx3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yx3 RCSB], [https://www.ebi.ac.uk/pdbsum/1yx3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yx3 ProSAT], [https://www.topsan.org/Proteins/NESGC/1yx3 TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/O87899_ALLVI O87899_ALLVI]] Part of a sulfur-relay system.[PIRNR:PIRNR006223]	+	[[https://www.uniprot.org/uniprot/O87899_ALLVI O87899_ALLVI]] Part of a sulfur-relay system.[PIRNR:PIRNR006223]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 08:54, 20 January 2021

OCA — Wed, 20 Jan 2021 08:54:37 GMT

←Older revision		Revision as of 08:54, 20 January 2021
Line 1:		Line 1:

	==NMR structure of Allochromatium vinosum DsrC: Northeast Structural Genomics Consortium target OP4==		==NMR structure of Allochromatium vinosum DsrC: Northeast Structural Genomics Consortium target OP4==
-	<StructureSection load='1yx3' size='340' side='right' caption='[[1yx3]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>	+	<StructureSection load='1yx3' size='340' side='right'caption='[[1yx3]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1yx3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_vinosus"_(ehrenberg_1838)_trevisan_1889 "bacillus vinosus" (ehrenberg 1838) trevisan 1889]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YX3 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1YX3 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1yx3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_vinosus"_(ehrenberg_1838)_trevisan_1889 "bacillus vinosus" (ehrenberg 1838) trevisan 1889]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YX3 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1YX3 FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DsrC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1049 "Bacillus vinosus" (Ehrenberg 1838) Trevisan 1889])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DsrC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1049 "Bacillus vinosus" (Ehrenberg 1838) Trevisan 1889])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1yx3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yx3 OCA], [http://pdbe.org/1yx3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yx3 RCSB], [http://www.ebi.ac.uk/pdbsum/1yx3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1yx3 ProSAT], [http://www.topsan.org/Proteins/NESGC/1yx3 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1yx3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yx3 OCA], [http://pdbe.org/1yx3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yx3 RCSB], [http://www.ebi.ac.uk/pdbsum/1yx3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1yx3 ProSAT], [http://www.topsan.org/Proteins/NESGC/1yx3 TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 32:		Line 32:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Cort, J R]]		[[Category: Cort, J R]]
	[[Category: Dahl, C]]		[[Category: Dahl, C]]

OCA at 06:44, 25 April 2018

OCA — Wed, 25 Apr 2018 06:44:50 GMT

←Older revision		Revision as of 06:44, 25 April 2018
Line 1:		Line 1:
		+
	==NMR structure of Allochromatium vinosum DsrC: Northeast Structural Genomics Consortium target OP4==		==NMR structure of Allochromatium vinosum DsrC: Northeast Structural Genomics Consortium target OP4==
	<StructureSection load='1yx3' size='340' side='right' caption='[[1yx3]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='1yx3' size='340' side='right' caption='[[1yx3]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[1yx3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_vinosus"_(ehrenberg_1838)_trevisan_1889 "bacillus vinosus" (ehrenberg 1838) trevisan 1889]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YX3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YX3 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1yx3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_vinosus"_(ehrenberg_1838)_trevisan_1889 "bacillus vinosus" (ehrenberg 1838) trevisan 1889]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YX3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YX3 FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DsrC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1049 "Bacillus vinosus" (Ehrenberg 1838) Trevisan 1889])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DsrC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1049 "Bacillus vinosus" (Ehrenberg 1838) Trevisan 1889])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yx3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yx3 OCA], [http://pdbe.org/1yx3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yx3 RCSB], [http://www.ebi.ac.uk/pdbsum/1yx3 PDBsum], [http://www.topsan.org/Proteins/NESGC/1yx3 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yx3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yx3 OCA], [http://pdbe.org/1yx3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yx3 RCSB], [http://www.ebi.ac.uk/pdbsum/1yx3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1yx3 ProSAT], [http://www.topsan.org/Proteins/NESGC/1yx3 TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yx/1yx3_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yx/1yx3_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yx3 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 22:09, 11 September 2015

OCA — Fri, 11 Sep 2015 22:09:13 GMT

←Older revision		Revision as of 22:09, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1yx3' size='340' side='right' caption='[[1yx3]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>		<StructureSection load='1yx3' size='340' side='right' caption='[[1yx3]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1yx3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Allochromatium_vinosum Allochromatium vinosum~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YX3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YX3 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1yx3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_vinosus"_(ehrenberg_1838)_trevisan_1889 "bacillus vinosus" (ehrenberg 1838) trevisan 1889]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YX3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YX3 FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DsrC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1049 ~~Allochromatium vinosum~~])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DsrC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1049 "Bacillus vinosus" (Ehrenberg 1838) Trevisan 1889])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yx3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yx3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1yx3 RCSB], [http://www.ebi.ac.uk/pdbsum/1yx3 PDBsum], [http://www.topsan.org/Proteins/NESGC/1yx3 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yx3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yx3 OCA], [http://pdbe.org/1yx3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yx3 RCSB], [http://www.ebi.ac.uk/pdbsum/1yx3 PDBsum], [http://www.topsan.org/Proteins/NESGC/1yx3 TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[http://www.uniprot.org/uniprot/~~O87899_CHRVI O87899_CHRVI~~]] Part of a sulfur-relay system ~~(By similarity)~~.[PIRNR:PIRNR006223]	+	[[http://www.uniprot.org/uniprot/O87899_ALLVI O87899_ALLVI]] Part of a sulfur-relay system.[PIRNR:PIRNR006223]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1yx3" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Allochromatium vinosum]]
	[[Category: Cort, J R]]		[[Category: Cort, J R]]
	[[Category: Dahl, C]]		[[Category: Dahl, C]]

OCA at 20:11, 25 December 2014

OCA — Thu, 25 Dec 2014 20:11:22 GMT

←Older revision		Revision as of 20:11, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1yx3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Allochromatium_vinosum Allochromatium vinosum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YX3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YX3 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1yx3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Allochromatium_vinosum Allochromatium vinosum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YX3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YX3 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DsrC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1049 Allochromatium vinosum])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DsrC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1049 Allochromatium vinosum])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yx3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yx3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1yx3 RCSB], [http://www.ebi.ac.uk/pdbsum/1yx3 PDBsum], [http://www.topsan.org/Proteins/NESGC/1yx3 TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yx3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yx3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1yx3 RCSB], [http://www.ebi.ac.uk/pdbsum/1yx3 PDBsum], [http://www.topsan.org/Proteins/NESGC/1yx3 TOPSAN]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/O87899_CHRVI O87899_CHRVI]] Part of a sulfur-relay system (By similarity).[PIRNR:PIRNR006223]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Allochromatium vinosum]]		[[Category: Allochromatium vinosum]]
-	[[Category: Cort, J R.]]	+	[[Category: Cort, J R]]
-	[[Category: Dahl, C.]]	+	[[Category: Dahl, C]]
-	[[Category: Kennedy, M A.]]	+	[[Category: Kennedy, M A]]
-	[[Category: Montelione, G T.]]	+	[[Category: Montelione, G T]]
-	[[Category: ~~NESG, Northeast~~ Structural ~~Genomics Consortium.~~]]	+	[[Category: Structural genomic]]
	[[Category: Dissimilatory sulfite reductase]]		[[Category: Dissimilatory sulfite reductase]]
	[[Category: Dsrc]]		[[Category: Dsrc]]
Line 39:		Line 41:
	[[Category: Gamma subunit]]		[[Category: Gamma subunit]]
	[[Category: Nesg]]		[[Category: Nesg]]
-	[[Category: ~~Northeast structural genomics consortium]]~~	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category:~~ Protein structure initiative]]	+
-	~~[[Category: Psi]]~~	+
-	~~[[Category: Structural genomic~~]]	+
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 19:32, 29 September 2014

OCA — Mon, 29 Sep 2014 19:32:25 GMT

←Older revision		Revision as of 19:32, 29 September 2014
Line 1:		Line 1:
-	[[~~Image~~:1yx3.~~png\|left~~\|200px]]	+	==NMR structure of Allochromatium vinosum DsrC: Northeast Structural Genomics Consortium target OP4==
		+	<StructureSection load='1yx3' size='340' side='right' caption='[[1yx3]], [[NMR_Ensembles_of_Models \| 20 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1yx3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Allochromatium_vinosum Allochromatium vinosum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YX3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YX3 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">DsrC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1049 Allochromatium vinosum])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yx3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yx3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1yx3 RCSB], [http://www.ebi.ac.uk/pdbsum/1yx3 PDBsum], [http://www.topsan.org/Proteins/NESGC/1yx3 TOPSAN]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yx/1yx3_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Sequenced genomes of dissimilatory sulfur-oxidizing and sulfate-reducing bacteria containing genes coding for DsrAB, the enzyme dissimilatory sulfite reductase, inevitably also contain the gene coding for the 12-kDa DsrC protein. DsrC is thought to have a yet unidentified role associated with the activity of DsrAB. Here we report the solution structure of DsrC from the sulfur-oxidizing purple sulfur bacterium Allochromatium vinosum determined with NMR spectroscopy in reducing conditions, and we describe the redox behavior of two conserved cysteine residues upon transfer to an oxidizing environment. In reducing conditions, the DsrC structure is disordered in the highly conserved carboxy-terminus. We present multiple lines of evidence that, in oxidizing conditions, a strictly conserved cysteine (Cys111) at the penultimate position in the sequence forms an intramolecular disulfide bond with Cys100, which is conserved in DsrC in all organisms with DsrAB. While an intermolecular Cys111-Cys111 disulfide-bonded dimer is rapidly formed under oxidizing conditions, the intramolecularly disulfide-bonded species (Cys100-Cys111) is the thermodynamically stable form of the protein under these conditions. Treatment of the disulfidic forms with reducing agent regenerates the monomeric species that was structurally characterized. Using a band-shift technique under nondenaturing conditions, we obtained evidence for the interaction of DsrC with heterohexameric DsrEFH, a protein encoded in the same operon. Mutation of Cys100 to serine prevented formation of the DsrC species assigned as an intramolecular disulfide in oxidizing conditions, while still allowing formation of the intermolecular Cys111-Cys111 dimer. In the reduced form, this mutant protein still interacted with DsrEFH. This was not the case for the Cys111Ser and Cys100Ser/Cys111Ser mutants, both of which also did not form protein dimers. Our observations highlight the central importance of the carboxy-terminal DsrC cysteine residues and are consistent with a role as a sulfur-substrate binding/transferring protein, as well as with an electron-transfer function via thiol-disulfide interchanges.

-	~~{{STRUCTURE_1yx3\| PDB=1yx3 \| SCENE= }}~~	+	Allochromatium vinosum DsrC: solution-state NMR structure, redox properties, and interaction with DsrEFH, a protein essential for purple sulfur bacterial sulfur oxidation.,Cort JR, Selan U, Schulte A, Grimm F, Kennedy MA, Dahl C J Mol Biol. 2008 Oct 10;382(3):692-707. Epub 2008 Jul 16. PMID:18656485<ref>PMID:18656485</ref>

-	~~===NMR structure~~ of ~~Allochromatium vinosum DsrC: Northeast Structural Genomics Consortium target OP4===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_18656485}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1yx3]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Allochromatium_vinosum Allochromatium vinosum]~~. ~~Full experimental information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1YX3 OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:018656485<~~/~~ref~~><~~ref group="xtra">PMID:015687204</ref><ref group="xtra">PMID:009695921</ref><references group="xtra"~~/>	+
	[[Category: Allochromatium vinosum]]		[[Category: Allochromatium vinosum]]
	[[Category: Cort, J R.]]		[[Category: Cort, J R.]]

OCA at 12:37, 23 January 2013

OCA — Wed, 23 Jan 2013 12:37:57 GMT

←Older revision		Revision as of 12:37, 23 January 2013
Line 1:		Line 1:
	[[Image:1yx3.png\|left\|200px]]		[[Image:1yx3.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1yx3", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1yx3\| PDB=1yx3 \| SCENE= }}		{{STRUCTURE_1yx3\| PDB=1yx3 \| SCENE= }}

	===NMR structure of Allochromatium vinosum DsrC: Northeast Structural Genomics Consortium target OP4===		===NMR structure of Allochromatium vinosum DsrC: Northeast Structural Genomics Consortium target OP4===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_18656485}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 18656485 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_18656485}}		{{ABSTRACT_PUBMED_18656485}}

Line 22:		Line 11:

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~18656485~~</ref><ref group="xtra">PMID:~~15687204~~</ref><ref group="xtra">PMID:~~9695921~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:018656485</ref><ref group="xtra">PMID:015687204</ref><ref group="xtra">PMID:009695921</ref><references group="xtra"/>
	[[Category: Allochromatium vinosum]]		[[Category: Allochromatium vinosum]]
	[[Category: Cort, J R.]]		[[Category: Cort, J R.]]

OCA: Protected "1yx3" [edit=sysop:move=sysop]

OCA — Mon, 14 Mar 2011 22:05:23 GMT

Protected "1yx3" [edit=sysop:move=sysop]

←Older revision

Revision as of 22:05, 14 March 2011

OCA at 22:05, 14 March 2011

OCA — Mon, 14 Mar 2011 22:05:21 GMT

←Older revision		Revision as of 22:05, 14 March 2011
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1yx3.png\|left\|200px]]		[[Image:1yx3.png\|left\|200px]]

Line 20:		Line 19:

	==About this Structure==		==About this Structure==
-	~~1YX3~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Allochromatium_vinosum Allochromatium vinosum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YX3 OCA].	+	[[1yx3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Allochromatium_vinosum Allochromatium vinosum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YX3 OCA].

	==Reference==		==Reference==
Line 40:		Line 39:
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Unknown function]]		[[Category: Unknown function]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 05:45:07 2009''