1yzc - Revision history

OCA at 08:07, 15 May 2024

OCA — Wed, 15 May 2024 08:07:40 GMT

←Older revision		Revision as of 08:07, 15 May 2024
Line 1:		Line 1:

	==The solution structure of a redesigned apocytochrome B562 (Rd-apocyt b562) with the N- and a part of the C-terminal helices unfolded==		==The solution structure of a redesigned apocytochrome B562 (Rd-apocyt b562) with the N- and a part of the C-terminal helices unfolded==
-	<StructureSection load='1yzc' size='340' side='right'caption='[[1yzc~~]], [[NMR_Ensembles_of_Models \| 10 NMR models~~]]' scene=''>	+	<StructureSection load='1yzc' size='340' side='right'caption='[[1yzc]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1yzc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Human Human~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YZC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YZC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1yzc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YZC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YZC FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style~~=~~'overflow: auto; max-height: 3em;'>[[1yza\|1yza]]</div~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yzc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yzc OCA], [https://pdbe.org/1yzc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yzc RCSB], [https://www.ebi.ac.uk/pdbsum/1yzc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yzc ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yzc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yzc OCA], [https://pdbe.org/1yzc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yzc RCSB], [https://www.ebi.ac.uk/pdbsum/1yzc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yzc ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q0SXH8_SHIF8 Q0SXH8_SHIF8]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 32:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Human~~]]	+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Structural genomic]]~~	+	[[Category: Bai Y]]
-	[[Category: Bai, Y]]	+	[[Category: Feng H]]
-	[[Category: Feng, H]]	+	[[Category: Zhou Z]]
-	[[Category: Zhou, Z]]	+
-	~~[[Category: Bsgc]]~~	+
-	~~[[Category: Electron transport]]~~	+
-	~~[[Category: Folding intermediate]]~~	+
-	~~[[Category: Native-state hydrogen exchange]]~~	+
-	~~[[Category: Protein engineering]]~~	+
-	~~[[Category: Protein structure]]~~	+
-	~~[[Category: PSI, Protein structure initiative~~]]	+

OCA at 16:34, 3 November 2021

OCA — Wed, 03 Nov 2021 16:34:54 GMT

←Older revision		Revision as of 16:34, 3 November 2021
Line 3:		Line 3:
	<StructureSection load='1yzc' size='340' side='right'caption='[[1yzc]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>		<StructureSection load='1yzc' size='340' side='right'caption='[[1yzc]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1yzc]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Human Human]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YZC OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1YZC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1yzc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YZC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YZC FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yza\|1yza]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1yza\|1yza]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1yzc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yzc OCA], [~~http~~://pdbe.org/1yzc PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1yzc RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1yzc PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1yzc ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yzc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yzc OCA], [https://pdbe.org/1yzc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yzc RCSB], [https://www.ebi.ac.uk/pdbsum/1yzc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yzc ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 17:11, 29 January 2020

OCA — Wed, 29 Jan 2020 17:11:43 GMT

←Older revision		Revision as of 17:11, 29 January 2020
Line 1:		Line 1:

	==The solution structure of a redesigned apocytochrome B562 (Rd-apocyt b562) with the N- and a part of the C-terminal helices unfolded==		==The solution structure of a redesigned apocytochrome B562 (Rd-apocyt b562) with the N- and a part of the C-terminal helices unfolded==
-	<StructureSection load='1yzc' size='340' side='right' caption='[[1yzc]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>	+	<StructureSection load='1yzc' size='340' side='right'caption='[[1yzc]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1yzc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YZC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YZC FirstGlance]. <br>		<table><tr><td colspan='2'>[[1yzc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YZC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YZC FirstGlance]. <br>
Line 31:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Human]]		[[Category: Human]]
		+	[[Category: Large Structures]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Bai, Y]]		[[Category: Bai, Y]]

OCA at 06:54, 25 April 2018

OCA — Wed, 25 Apr 2018 06:54:03 GMT

←Older revision		Revision as of 06:54, 25 April 2018
Line 1:		Line 1:
		+
	==The solution structure of a redesigned apocytochrome B562 (Rd-apocyt b562) with the N- and a part of the C-terminal helices unfolded==		==The solution structure of a redesigned apocytochrome B562 (Rd-apocyt b562) with the N- and a part of the C-terminal helices unfolded==
	<StructureSection load='1yzc' size='340' side='right' caption='[[1yzc]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>		<StructureSection load='1yzc' size='340' side='right' caption='[[1yzc]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[1yzc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YZC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YZC FirstGlance]. <br>		<table><tr><td colspan='2'>[[1yzc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YZC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YZC FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yza\|1yza]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yza\|1yza]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yzc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yzc OCA], [http://pdbe.org/1yzc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yzc RCSB], [http://www.ebi.ac.uk/pdbsum/1yzc PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yzc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yzc OCA], [http://pdbe.org/1yzc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yzc RCSB], [http://www.ebi.ac.uk/pdbsum/1yzc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1yzc ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 10:		Line 11:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yz/1yzc_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yz/1yzc_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yzc ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 17:50, 11 September 2015

OCA — Fri, 11 Sep 2015 17:50:33 GMT

←Older revision		Revision as of 17:50, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1yzc' size='340' side='right' caption='[[1yzc]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>		<StructureSection load='1yzc' size='340' side='right' caption='[[1yzc]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1yzc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Homo_sapiens Homo sapiens~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YZC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YZC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1yzc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YZC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YZC FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yza\|1yza]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yza\|1yza]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yzc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yzc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1yzc RCSB], [http://www.ebi.ac.uk/pdbsum/1yzc PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yzc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yzc OCA], [http://pdbe.org/1yzc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yzc RCSB], [http://www.ebi.ac.uk/pdbsum/1yzc PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 24:		Line 24:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1yzc" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Homo sapiens~~]]	+	[[Category: Human]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Bai, Y]]		[[Category: Bai, Y]]

OCA at 10:28, 8 January 2015

OCA — Thu, 08 Jan 2015 10:28:23 GMT

←Older revision		Revision as of 10:28, 8 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1yzc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YZC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YZC FirstGlance]. <br>		<table><tr><td colspan='2'>[[1yzc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YZC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YZC FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yza\|1yza]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yza\|1yza]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yzc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yzc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1yzc RCSB], [http://www.ebi.ac.uk/pdbsum/1yzc PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yzc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yzc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1yzc RCSB], [http://www.ebi.ac.uk/pdbsum/1yzc PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 29:
	</StructureSection>		</StructureSection>
	[[Category: Homo sapiens]]		[[Category: Homo sapiens]]
-	[[Category: ~~BSGC, Berkeley~~ Structural ~~Genomics Center.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Bai, Y.]]	+	[[Category: Bai, Y]]
-	[[Category: Feng, H.]]	+	[[Category: Feng, H]]
-	[[Category: Zhou, Z~~.]]~~	+	[[Category: Zhou, Z]]
-	~~[[Category: Berkeley structural genomics center~~]]	+
	[[Category: Bsgc]]		[[Category: Bsgc]]
	[[Category: Electron transport]]		[[Category: Electron transport]]
Line 40:		Line 39:
	[[Category: Protein engineering]]		[[Category: Protein engineering]]
	[[Category: Protein structure]]		[[Category: Protein structure]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi]]~~	+
-	~~[[Category: Structural genomic~~]]	+

OCA at 19:09, 29 September 2014

OCA — Mon, 29 Sep 2014 19:09:36 GMT

←Older revision		Revision as of 19:09, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1yzc.~~png~~\|~~left~~\|200px]]	+	==The solution structure of a redesigned apocytochrome B562 (Rd-apocyt b562) with the N- and a part of the C-terminal helices unfolded==
		+	<StructureSection load='1yzc' size='340' side='right' caption='[[1yzc]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1yzc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YZC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YZC FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yza\|1yza]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1yzc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yzc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1yzc RCSB], [http://www.ebi.ac.uk/pdbsum/1yzc PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yz/1yzc_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Using native-state hydrogen-exchange-directed protein engineering and multidimensional NMR, we determined the high-resolution structure (rms deviation, 1.1 angstroms) for an intermediate of the four-helix bundle protein: Rd-apocytochrome b562. The intermediate has the N-terminal helix and a part of the C-terminal helix unfolded. In earlier studies, we also solved the structures of two other folding intermediates for the same protein: one with the N-terminal helix alone unfolded and the other with a reorganized hydrophobic core. Together, these structures provide a description of a protein folding pathway with multiple intermediates at atomic resolution. The two general features for the intermediates are (i) native-like backbone topology and (ii) nonnative side-chain interactions. These results have implications for important issues in protein folding studies, including large-scale conformation search, -value analysis, and computer simulations.

-	~~{{STRUCTURE_1yzc\| PDB=1yzc \| SCENE= }}~~	+	A protein folding pathway with multiple folding intermediates at atomic resolution.,Feng H, Zhou Z, Bai Y Proc Natl Acad Sci U S A. 2005 Apr 5;102(14):5026-31. Epub 2005 Mar 25. PMID:15793003<ref>PMID:15793003</ref>

-	~~===The solution structure of a redesigned apocytochrome B562 (Rd-apocyt b562) with the N- and~~ a ~~part~~ of the ~~C-terminal helices unfolded===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_15793003}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1yzc]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Homo_sapiens Homo sapiens]~~. ~~Full experimental information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1YZC OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:015793003<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Homo sapiens]]		[[Category: Homo sapiens]]
	[[Category: BSGC, Berkeley Structural Genomics Center.]]		[[Category: BSGC, Berkeley Structural Genomics Center.]]

OCA: Protected "1yzc" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 17:34:38 GMT

Protected "1yzc" [edit=sysop:move=sysop]

←Older revision

Revision as of 17:34, 5 January 2013

OCA at 17:34, 5 January 2013

OCA — Sat, 05 Jan 2013 17:34:31 GMT

←Older revision		Revision as of 17:34, 5 January 2013
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-	{{Seed}}
	[[Image:1yzc.png\|left\|200px]]		[[Image:1yzc.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1yzc", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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	{{STRUCTURE_1yzc\| PDB=1yzc \| SCENE= }}		{{STRUCTURE_1yzc\| PDB=1yzc \| SCENE= }}

	===The solution structure of a redesigned apocytochrome B562 (Rd-apocyt b562) with the N- and a part of the C-terminal helices unfolded===		===The solution structure of a redesigned apocytochrome B562 (Rd-apocyt b562) with the N- and a part of the C-terminal helices unfolded===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_15793003}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 15793003 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_15793003}}		{{ABSTRACT_PUBMED_15793003}}

	==About this Structure==		==About this Structure==
-	~~1YZC~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YZC OCA].	+	[[1yzc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YZC OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15793003~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015793003</ref><references group="xtra"/>
	[[Category: Homo sapiens]]		[[Category: Homo sapiens]]
	[[Category: BSGC, Berkeley Structural Genomics Center.]]		[[Category: BSGC, Berkeley Structural Genomics Center.]]
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	[[Category: Berkeley structural genomics center]]		[[Category: Berkeley structural genomics center]]
	[[Category: Bsgc]]		[[Category: Bsgc]]
		+	[[Category: Electron transport]]
	[[Category: Folding intermediate]]		[[Category: Folding intermediate]]
	[[Category: Native-state hydrogen exchange]]		[[Category: Native-state hydrogen exchange]]
-	[[Category: Nmr]]
	[[Category: Protein engineering]]		[[Category: Protein engineering]]
	[[Category: Protein structure]]		[[Category: Protein structure]]
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	[[Category: Psi]]		[[Category: Psi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 05:10:56 2009''

OCA at 03:10, 18 February 2009

OCA — Wed, 18 Feb 2009 03:10:58 GMT

←Older revision		Revision as of 03:10, 18 February 2009
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	==About this Structure==		==About this Structure==
-	Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YZC OCA].	+	1YZC is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YZC OCA].

	==Reference==		==Reference==
-	~~A protein folding pathway with multiple folding intermediates at atomic resolution., Feng H, Zhou Z, Bai Y, Proc Natl Acad Sci U S A. 2005 Apr 5;102(14):5026-31. Epub 2005 Mar 25.~~ PMID:[~~http~~:~~//www.ncbi.nlm.nih.gov/pubmed/15793003 15793003~~]	+	<ref group="xtra">PMID:15793003</ref><references group="xtra"/>
		+	[[Category: Homo sapiens]]
	[[Category: BSGC, Berkeley Structural Genomics Center.]]		[[Category: BSGC, Berkeley Structural Genomics Center.]]
	[[Category: Bai, Y.]]		[[Category: Bai, Y.]]
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	[[Category: Structural genomic]]		[[Category: Structural genomic]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Tue Jul 29 11~~:52:~~34 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 05:10:56 2009''