1z8k - Revision history

OCA at 08:09, 15 May 2024

OCA — Wed, 15 May 2024 08:09:48 GMT

←Older revision		Revision as of 08:09, 15 May 2024
Line 3:		Line 3:
	<StructureSection load='1z8k' size='340' side='right'caption='[[1z8k]], [[Resolution\|resolution]] 1.71Å' scene=''>		<StructureSection load='1z8k' size='340' side='right'caption='[[1z8k]], [[Resolution\|resolution]] 1.71Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1z8k]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Arath Arath~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z8K OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=1Z8K FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1z8k]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z8K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1Z8K FirstGlance]. <br>
-	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"~~><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.712Å</td></tr>
-	~~<tr~~ id~~='gene'><td class~~="~~sblockLbl~~">~~<b>~~[[~~Gene~~\|~~Gene:~~]]~~</b></td><td class="sblockDat">AT3G25770 ([http://www~~.~~ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info~~&~~srchmode=5&id=3702 ARATH])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks~~'>~~[http://en.wikipedia.org/wiki/Allene-oxide_cyclase Allene-oxide cyclase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.99.6 5.3.99.6]~~ </~~span~~></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1z8k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z8k OCA], [https://pdbe.org/1z8k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1z8k RCSB], [https://www.ebi.ac.uk/pdbsum/1z8k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1z8k ProSAT], [https://www.topsan.org/Proteins/CESG/1z8k TOPSAN]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=1z8k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z8k OCA], [~~http~~://pdbe.org/1z8k PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1z8k RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1z8k PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1z8k ProSAT], [~~http~~://www.topsan.org/Proteins/CESG/1z8k TOPSAN]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/AOC2_ARATH AOC2_ARATH]] Involved in the production of 12-oxo-phytodienoic acid (OPDA), a precursor of jasmonic acid.	+	[https://www.uniprot.org/uniprot/AOC2_ARATH AOC2_ARATH] Involved in the production of 12-oxo-phytodienoic acid (OPDA), a precursor of jasmonic acid.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 23:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Allene-oxide cyclase]]~~	+	[[Category: Arabidopsis thaliana]]
-	~~[[Category: Arath~~]]	+
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Allard~~, S T.M~~]]	+	[[Category: Allard STM]]
-	[[Category: Bingman~~, C A~~]]	+	[[Category: Bingman CA]]
-	[[Category: Bitto, E]]	+	[[Category: Bitto E]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Phillips Jr GN]]
-	[[Category: Phillips~~, G N~~]]	+	[[Category: Wesenberg GE]]
-	[[Category: Wesenberg~~, G E]]~~	+
-	~~[[Category: At3g25770]]~~	+
-	~~[[Category: Cesg]]~~	+
-	~~[[Category: Isomerase]]~~	+
-	~~[[Category: Jasmonic acid biosynthesis]]~~	+
-	~~[[Category: Plant protein]]~~	+
-	~~[[Category: PSI, Protein structure initiative~~]]	+

OCA at 08:59, 20 January 2021

OCA — Wed, 20 Jan 2021 08:59:35 GMT

←Older revision		Revision as of 08:59, 20 January 2021
Line 1:		Line 1:

	==X-ray structure of allene oxide cyclase from Arabidopsis thaliana at3g25770==		==X-ray structure of allene oxide cyclase from Arabidopsis thaliana at3g25770==
-	<StructureSection load='1z8k' size='340' side='right' caption='[[1z8k]], [[Resolution\|resolution]] 1.71Å' scene=''>	+	<StructureSection load='1z8k' size='340' side='right'caption='[[1z8k]], [[Resolution\|resolution]] 1.71Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1z8k]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z8K OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1Z8K FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1z8k]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z8K OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1Z8K FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AT3G25770 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AT3G25770 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Allene-oxide_cyclase Allene-oxide cyclase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.99.6 5.3.99.6] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Allene-oxide_cyclase Allene-oxide cyclase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.99.6 5.3.99.6] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1z8k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z8k OCA], [http://pdbe.org/1z8k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1z8k RCSB], [http://www.ebi.ac.uk/pdbsum/1z8k PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1z8k ProSAT], [http://www.topsan.org/Proteins/CESG/1z8k TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1z8k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z8k OCA], [http://pdbe.org/1z8k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1z8k RCSB], [http://www.ebi.ac.uk/pdbsum/1z8k PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1z8k ProSAT], [http://www.topsan.org/Proteins/CESG/1z8k TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 15:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z8/1z8k_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z8/1z8k_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 25:		Line 25:
	[[Category: Allene-oxide cyclase]]		[[Category: Allene-oxide cyclase]]
	[[Category: Arath]]		[[Category: Arath]]
		+	[[Category: Large Structures]]
	[[Category: Allard, S T.M]]		[[Category: Allard, S T.M]]
	[[Category: Bingman, C A]]		[[Category: Bingman, C A]]

OCA at 14:13, 12 October 2017

OCA — Thu, 12 Oct 2017 14:13:04 GMT

←Older revision		Revision as of 14:13, 12 October 2017
Line 1:		Line 1:
		+
	==X-ray structure of allene oxide cyclase from Arabidopsis thaliana at3g25770==		==X-ray structure of allene oxide cyclase from Arabidopsis thaliana at3g25770==
	<StructureSection load='1z8k' size='340' side='right' caption='[[1z8k]], [[Resolution\|resolution]] 1.71Å' scene=''>		<StructureSection load='1z8k' size='340' side='right' caption='[[1z8k]], [[Resolution\|resolution]] 1.71Å' scene=''>
Line 6:		Line 7:
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AT3G25770 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AT3G25770 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Allene-oxide_cyclase Allene-oxide cyclase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.99.6 5.3.99.6] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Allene-oxide_cyclase Allene-oxide cyclase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.99.6 5.3.99.6] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1z8k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z8k OCA], [http://pdbe.org/1z8k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1z8k RCSB], [http://www.ebi.ac.uk/pdbsum/1z8k PDBsum], [http://www.topsan.org/Proteins/CESG/1z8k TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1z8k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z8k OCA], [http://pdbe.org/1z8k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1z8k RCSB], [http://www.ebi.ac.uk/pdbsum/1z8k PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1z8k ProSAT], [http://www.topsan.org/Proteins/CESG/1z8k TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 18:		Line 19:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1z8k ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 01:49, 12 September 2015

OCA — Sat, 12 Sep 2015 01:49:22 GMT

←Older revision		Revision as of 01:49, 12 September 2015
Line 2:		Line 2:
	<StructureSection load='1z8k' size='340' side='right' caption='[[1z8k]], [[Resolution\|resolution]] 1.71Å' scene=''>		<StructureSection load='1z8k' size='340' side='right' caption='[[1z8k]], [[Resolution\|resolution]] 1.71Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1z8k]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Arabidopsis_thaliana Arabidopsis thaliana~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z8K OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Z8K FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1z8k]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z8K OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Z8K FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AT3G25770 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ~~Arabidopsis thaliana~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AT3G25770 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Allene-oxide_cyclase Allene-oxide cyclase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.99.6 5.3.99.6] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Allene-oxide_cyclase Allene-oxide cyclase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.99.6 5.3.99.6] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1z8k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z8k OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1z8k RCSB], [http://www.ebi.ac.uk/pdbsum/1z8k PDBsum], [http://www.topsan.org/Proteins/CESG/1z8k TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1z8k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z8k OCA], [http://pdbe.org/1z8k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1z8k RCSB], [http://www.ebi.ac.uk/pdbsum/1z8k PDBsum], [http://www.topsan.org/Proteins/CESG/1z8k TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 23:		Line 23:
	</StructureSection>		</StructureSection>
	[[Category: Allene-oxide cyclase]]		[[Category: Allene-oxide cyclase]]
-	[[Category: ~~Arabidopsis thaliana~~]]	+	[[Category: Arath]]
	[[Category: Allard, S T.M]]		[[Category: Allard, S T.M]]
	[[Category: Bingman, C A]]		[[Category: Bingman, C A]]

OCA at 22:15, 25 December 2014

OCA — Thu, 25 Dec 2014 22:15:03 GMT

←Older revision		Revision as of 22:15, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1z8k]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z8K OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Z8K FirstGlance]. <br>		<table><tr><td colspan='2'>[[1z8k]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z8K OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Z8K FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AT3G25770 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AT3G25770 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Allene-oxide_cyclase Allene-oxide cyclase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.99.6 5.3.99.6] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Allene-oxide_cyclase Allene-oxide cyclase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.99.6 5.3.99.6] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1z8k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z8k OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1z8k RCSB], [http://www.ebi.ac.uk/pdbsum/1z8k PDBsum], [http://www.topsan.org/Proteins/CESG/1z8k TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1z8k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z8k OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1z8k RCSB], [http://www.ebi.ac.uk/pdbsum/1z8k PDBsum], [http://www.topsan.org/Proteins/CESG/1z8k TOPSAN]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/AOC2_ARATH AOC2_ARATH]] Involved in the production of 12-oxo-phytodienoic acid (OPDA), a precursor of jasmonic acid.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 22:		Line 24:
	[[Category: Allene-oxide cyclase]]		[[Category: Allene-oxide cyclase]]
	[[Category: Arabidopsis thaliana]]		[[Category: Arabidopsis thaliana]]
-	[[Category: Allard, S T.M.]]	+	[[Category: Allard, S T.M]]
-	[[Category: Bingman, C A.]]	+	[[Category: Bingman, C A]]
-	[[Category: Bitto, E.]]	+	[[Category: Bitto, E]]
-	[[Category: ~~CESG, Center for Eukaryotic~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Phillips, G N.]]	+	[[Category: Phillips, G N]]
-	[[Category: Wesenberg, G E.]]	+	[[Category: Wesenberg, G E]]
	[[Category: At3g25770]]		[[Category: At3g25770]]
-	[[Category: Center for eukaryotic structural genomic]]
	[[Category: Cesg]]		[[Category: Cesg]]
	[[Category: Isomerase]]		[[Category: Isomerase]]
	[[Category: Jasmonic acid biosynthesis]]		[[Category: Jasmonic acid biosynthesis]]
	[[Category: Plant protein]]		[[Category: Plant protein]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi]]~~	+
-	~~[[Category: Structural genomic~~]]	+

OCA at 21:36, 29 September 2014

OCA — Mon, 29 Sep 2014 21:36:44 GMT

←Older revision		Revision as of 21:36, 29 September 2014
Line 1:		Line 1:
-	~~[[Image:1z8k.png\|left\|200px]]~~	+	==X-ray structure of allene oxide cyclase from Arabidopsis thaliana at3g25770==
-		+	<StructureSection load='1z8k' size='340' side='right' caption='[[1z8k]], [[Resolution\|resolution]] 1.71Å' scene=''>
-	~~{{STRUCTURE_1z8k\| PDB=1z8k \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[1z8k]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z8K OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1Z8K FirstGlance]. <br>
-	===X-ray structure of allene oxide cyclase from Arabidopsis thaliana at3g25770===	+	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AT3G25770 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])</td></tr>
-		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Allene-oxide_cyclase Allene-oxide cyclase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.99.6 5.3.99.6] </span></td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1z8k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z8k OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1z8k RCSB], [http://www.ebi.ac.uk/pdbsum/1z8k PDBsum], [http://www.topsan.org/Proteins/CESG/1z8k TOPSAN]</span></td></tr>
-	[[1z8k]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z8K OCA].	+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z8/1z8k_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Allene-oxide cyclase]]		[[Category: Allene-oxide cyclase]]
	[[Category: Arabidopsis thaliana]]		[[Category: Arabidopsis thaliana]]

OCA: Protected "1z8k" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 17:41:34 GMT

Protected "1z8k" [edit=sysop:move=sysop]

←Older revision

Revision as of 17:41, 5 January 2013

OCA at 17:41, 5 January 2013

OCA — Sat, 05 Jan 2013 17:41:31 GMT

←Older revision		Revision as of 17:41, 5 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1z8k.png\|left\|200px]]		[[Image:1z8k.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1z8k", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1z8k\| PDB=1z8k \| SCENE= }}		{{STRUCTURE_1z8k\| PDB=1z8k \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~1Z8K~~ is a 3 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z8K OCA].	+	[[1z8k]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z8K OCA].
	[[Category: Allene-oxide cyclase]]		[[Category: Allene-oxide cyclase]]
	[[Category: Arabidopsis thaliana]]		[[Category: Arabidopsis thaliana]]
Line 21:		Line 14:
	[[Category: Bitto, E.]]		[[Category: Bitto, E.]]
	[[Category: CESG, Center for Eukaryotic Structural Genomics.]]		[[Category: CESG, Center for Eukaryotic Structural Genomics.]]
-	[[Category: ~~Jr.~~, G N~~.Phillips~~.]]	+	[[Category: Phillips, G N.]]
	[[Category: Wesenberg, G E.]]		[[Category: Wesenberg, G E.]]
	[[Category: At3g25770]]		[[Category: At3g25770]]
Line 32:		Line 25:
	[[Category: Psi]]		[[Category: Psi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 09:29:39 2009''

OCA at 07:29, 18 February 2009

OCA — Wed, 18 Feb 2009 07:29:41 GMT

←Older revision		Revision as of 07:29, 18 February 2009
Line 1:		Line 1:
-	[[Image:1z8k.~~jpg~~\|left\|200px]]	+	{{Seed}}
		+	[[Image:1z8k.png\|left\|200px]]

	<!--		<!--
Line 9:		Line 10:
	{{STRUCTURE_1z8k\| PDB=1z8k \| SCENE= }}		{{STRUCTURE_1z8k\| PDB=1z8k \| SCENE= }}

-	~~'''~~X-ray structure of allene oxide cyclase from Arabidopsis thaliana at3g25770~~'''~~	+	===X-ray structure of allene oxide cyclase from Arabidopsis thaliana at3g25770===


	==About this Structure==		==About this Structure==
-	1Z8K is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z8K OCA].	+	1Z8K is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1Z8K OCA].
	[[Category: Allene-oxide cyclase]]		[[Category: Allene-oxide cyclase]]
	[[Category: Arabidopsis thaliana]]		[[Category: Arabidopsis thaliana]]
-	[[Category: Single protein]]
	[[Category: Allard, S T.M.]]		[[Category: Allard, S T.M.]]
	[[Category: Bingman, C A.]]		[[Category: Bingman, C A.]]
Line 32:		Line 32:
	[[Category: Psi]]		[[Category: Psi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sat May 3 17:~~18:~~47 2008~~''	+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 09:29:39 2009''

OCA at 14:18, 3 May 2008

OCA — Sat, 03 May 2008 14:18:49 GMT

←Older revision		Revision as of 14:18, 3 May 2008
Line 1:		Line 1:
	[[Image:1z8k.jpg\|left\|200px]]		[[Image:1z8k.jpg\|left\|200px]]

-	~~{{Structure~~	+	<!--
-	~~\|PDB= 1z8k \|SIZE=350\|CAPTION= <scene name='initialview01'>1z8k</scene>~~, ~~resolution 1~~.~~712Å~~	+	The line below this paragraph, containing "STRUCTURE_1z8k", creates the "Structure Box" on the page.
-	~~\|SITE=~~	+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	~~\|LIGAND= <~~scene ~~name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>~~	+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	~~\|ACTIVITY= <span class='plainlinks'>[http://en~~.~~wikipedia.org/wiki/Allene~~-~~oxide_cyclase Allene~~-~~oxide cyclase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.99.6 5.3.99.6] </span~~>	+	or leave the SCENE parameter empty for the default display.
-	\|~~GENE~~= ~~AT3G25770 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])~~	+	-->
-	\|~~DOMAIN~~=~~<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam06351 Allene_ox_cyc]</span>~~	+	{{STRUCTURE_1z8k\| PDB=1z8k \| SCENE= }}
-	~~\|RELATEDENTRY=~~	+
-	\|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1z8k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1z8k OCA], [http://www.ebi.ac.uk/pdbsum/1z8k PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1z8k RCSB]</span>	+
-	}}	+

	'''X-ray structure of allene oxide cyclase from Arabidopsis thaliana at3g25770'''		'''X-ray structure of allene oxide cyclase from Arabidopsis thaliana at3g25770'''
Line 26:		Line 23:
	[[Category: Jr., G N.Phillips.]]		[[Category: Jr., G N.Phillips.]]
	[[Category: Wesenberg, G E.]]		[[Category: Wesenberg, G E.]]
-	[[Category: ~~at3g25770~~]]	+	[[Category: At3g25770]]
-	[[Category: ~~center~~ for eukaryotic structural genomic]]	+	[[Category: Center for eukaryotic structural genomic]]
-	[[Category: ~~cesg~~]]	+	[[Category: Cesg]]
-	[[Category: ~~isomerase~~]]	+	[[Category: Isomerase]]
-	[[Category: ~~jasmonic~~ acid biosynthesis]]	+	[[Category: Jasmonic acid biosynthesis]]
-	[[Category: ~~plant~~ protein]]	+	[[Category: Plant protein]]
-	[[Category: ~~protein~~ structure initiative]]	+	[[Category: Protein structure initiative]]
-	[[Category: ~~psi~~]]	+	[[Category: Psi]]
-	[[Category: ~~structural~~ genomic]]	+	[[Category: Structural genomic]]
-		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 17:18:47 2008''
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Mon Mar 31 01~~:32:05 2008''	+