1zbp - Revision history

OCA at 08:10, 15 May 2024

OCA — Wed, 15 May 2024 08:10:28 GMT

←Older revision		Revision as of 08:10, 15 May 2024
Line 3:		Line 3:
	<StructureSection load='1zbp' size='340' side='right'caption='[[1zbp]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='1zbp' size='340' side='right'caption='[[1zbp]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1zbp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Vibpa Vibpa~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZBP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZBP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1zbp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_RIMD_2210633 Vibrio parahaemolyticus RIMD 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZBP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZBP FirstGlance]. <br>
-	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non~~-~~Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.4Å</td></tr>
		+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zbp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zbp OCA], [https://pdbe.org/1zbp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zbp RCSB], [https://www.ebi.ac.uk/pdbsum/1zbp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zbp ProSAT], [https://www.topsan.org/Proteins/NESGC/1zbp TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zbp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zbp OCA], [https://pdbe.org/1zbp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zbp RCSB], [https://www.ebi.ac.uk/pdbsum/1zbp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zbp ProSAT], [https://www.topsan.org/Proteins/NESGC/1zbp TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q87HD3_VIBPA Q87HD3_VIBPA]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 34:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Vibpa~~]]	+	[[Category: Vibrio parahaemolyticus RIMD 2210633]]
-	[[Category: Acton~~, T B~~]]	+	[[Category: Acton TB]]
-	[[Category: Ciao, M]]	+	[[Category: Ciao M]]
-	[[Category: Forouhar, F]]	+	[[Category: Forouhar F]]
-	[[Category: Hunt~~, J F~~]]	+	[[Category: Hunt JF]]
-	[[Category: Montelione~~, G T]]~~	+	[[Category: Montelione GT]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Tong L]]
-	[[Category: Tong, L]]	+	[[Category: Vorobiev SM]]
-	[[Category: Vorobiev~~, S M~~]]	+	[[Category: Yong W]]
-	[[Category: Yong, W]]	+
-	~~[[Category: Alpha-beta protein]]~~	+
-	~~[[Category: Nesg]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 06:08, 28 April 2021

OCA — Wed, 28 Apr 2021 06:08:29 GMT

←Older revision		Revision as of 06:08, 28 April 2021
Line 3:		Line 3:
	<StructureSection load='1zbp' size='340' side='right'caption='[[1zbp]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='1zbp' size='340' side='right'caption='[[1zbp]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1zbp]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Vibpa Vibpa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZBP OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1ZBP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1zbp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibpa Vibpa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZBP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZBP FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1zbp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zbp OCA], [~~http~~://pdbe.org/1zbp PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1zbp RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1zbp PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1zbp ProSAT], [~~http~~://www.topsan.org/Proteins/NESGC/1zbp TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zbp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zbp OCA], [https://pdbe.org/1zbp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zbp RCSB], [https://www.ebi.ac.uk/pdbsum/1zbp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zbp ProSAT], [https://www.topsan.org/Proteins/NESGC/1zbp TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 08:54, 24 July 2019

OCA — Wed, 24 Jul 2019 08:54:50 GMT

←Older revision		Revision as of 08:54, 24 July 2019
Line 1:		Line 1:

	==X-Ray Crystal Structure of Protein VPA1032 from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR44==		==X-Ray Crystal Structure of Protein VPA1032 from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR44==
-	<StructureSection load='1zbp' size='340' side='right' caption='[[1zbp]], [[Resolution\|resolution]] 2.40Å' scene=''>	+	<StructureSection load='1zbp' size='340' side='right'caption='[[1zbp]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1zbp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibpa Vibpa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZBP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZBP FirstGlance]. <br>		<table><tr><td colspan='2'>[[1zbp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibpa Vibpa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZBP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZBP FirstGlance]. <br>
Line 11:		Line 11:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zb/1zbp_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zb/1zbp_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 30:		Line 30:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Vibpa]]		[[Category: Vibpa]]
	[[Category: Acton, T B]]		[[Category: Acton, T B]]

OCA at 12:21, 12 October 2017

OCA — Thu, 12 Oct 2017 12:21:46 GMT

←Older revision		Revision as of 12:21, 12 October 2017
Line 1:		Line 1:
		+
	==X-Ray Crystal Structure of Protein VPA1032 from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR44==		==X-Ray Crystal Structure of Protein VPA1032 from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR44==
	<StructureSection load='1zbp' size='340' side='right' caption='[[1zbp]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='1zbp' size='340' side='right' caption='[[1zbp]], [[Resolution\|resolution]] 2.40Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[1zbp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibpa Vibpa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZBP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZBP FirstGlance]. <br>		<table><tr><td colspan='2'>[[1zbp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibpa Vibpa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZBP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZBP FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zbp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zbp OCA], [http://pdbe.org/1zbp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1zbp RCSB], [http://www.ebi.ac.uk/pdbsum/1zbp PDBsum], [http://www.topsan.org/Proteins/NESGC/1zbp TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zbp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zbp OCA], [http://pdbe.org/1zbp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1zbp RCSB], [http://www.ebi.ac.uk/pdbsum/1zbp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1zbp ProSAT], [http://www.topsan.org/Proteins/NESGC/1zbp TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 08:53, 9 February 2016

OCA — Tue, 09 Feb 2016 08:53:27 GMT

←Older revision		Revision as of 08:53, 9 February 2016
Line 14:		Line 14:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1zbp ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 20:38, 10 September 2015

OCA — Thu, 10 Sep 2015 20:38:14 GMT

←Older revision		Revision as of 20:38, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1zbp' size='340' side='right' caption='[[1zbp]], [[Resolution\|resolution]] 2.40Å' scene=''>		<StructureSection load='1zbp' size='340' side='right' caption='[[1zbp]], [[Resolution\|resolution]] 2.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1zbp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Vibrio_parahaemolyticus Vibrio parahaemolyticus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZBP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZBP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1zbp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibpa Vibpa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZBP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZBP FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zbp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zbp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1zbp RCSB], [http://www.ebi.ac.uk/pdbsum/1zbp PDBsum], [http://www.topsan.org/Proteins/NESGC/1zbp TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zbp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zbp OCA], [http://pdbe.org/1zbp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1zbp RCSB], [http://www.ebi.ac.uk/pdbsum/1zbp PDBsum], [http://www.topsan.org/Proteins/NESGC/1zbp TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 24:		Line 24:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1zbp" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Vibrio parahaemolyticus~~]]	+	[[Category: Vibpa]]
	[[Category: Acton, T B]]		[[Category: Acton, T B]]
	[[Category: Ciao, M]]		[[Category: Ciao, M]]

OCA at 05:51, 25 December 2014

OCA — Thu, 25 Dec 2014 05:51:03 GMT

←Older revision		Revision as of 05:51, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1zbp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZBP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZBP FirstGlance]. <br>		<table><tr><td colspan='2'>[[1zbp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZBP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZBP FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zbp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zbp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1zbp RCSB], [http://www.ebi.ac.uk/pdbsum/1zbp PDBsum], [http://www.topsan.org/Proteins/NESGC/1zbp TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zbp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zbp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1zbp RCSB], [http://www.ebi.ac.uk/pdbsum/1zbp PDBsum], [http://www.topsan.org/Proteins/NESGC/1zbp TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 29:
	</StructureSection>		</StructureSection>
	[[Category: Vibrio parahaemolyticus]]		[[Category: Vibrio parahaemolyticus]]
-	[[Category: Acton, T B.]]	+	[[Category: Acton, T B]]
-	[[Category: Ciao, M.]]	+	[[Category: Ciao, M]]
-	[[Category: Forouhar, F.]]	+	[[Category: Forouhar, F]]
-	[[Category: Hunt, J F.]]	+	[[Category: Hunt, J F]]
-	[[Category: Montelione, G T.]]	+	[[Category: Montelione, G T]]
-	[[Category: ~~NESG, Northeast~~ Structural ~~Genomics Consortium.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Tong, L.]]	+	[[Category: Tong, L]]
-	[[Category: Vorobiev, S M.]]	+	[[Category: Vorobiev, S M]]
-	[[Category: Yong, W.]]	+	[[Category: Yong, W]]
	[[Category: Alpha-beta protein]]		[[Category: Alpha-beta protein]]
	[[Category: Nesg]]		[[Category: Nesg]]
-	[[Category: ~~Northeast structural genomics consortium]]~~	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category:~~ Protein structure initiative]]	+
-	~~[[Category: Psi]]~~	+
-	~~[[Category: Structural genomic~~]]	+
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 21:15, 29 September 2014

OCA — Mon, 29 Sep 2014 21:15:34 GMT

←Older revision		Revision as of 21:15, 29 September 2014
Line 1:		Line 1:
-	[[~~Image~~:1zbp.~~png\|left~~\|200px]]	+	==X-Ray Crystal Structure of Protein VPA1032 from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR44==
		+	<StructureSection load='1zbp' size='340' side='right' caption='[[1zbp]], [[Resolution\|resolution]] 2.40Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1zbp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZBP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZBP FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zbp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zbp OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1zbp RCSB], [http://www.ebi.ac.uk/pdbsum/1zbp PDBsum], [http://www.topsan.org/Proteins/NESGC/1zbp TOPSAN]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zb/1zbp_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Structural genomics efforts have produced structural information, either directly or by modeling, for thousands of proteins over the past few years. While many of these proteins have known functions, a large percentage of them have not been characterized at the functional level. The structural information has provided valuable functional insights on some of these proteins, through careful structural analyses, serendipity, and structure-guided functional screening. Some of the success stories based on structures solved at the Northeast Structural Genomics Consortium (NESG) are reported here. These include a novel methyl salicylate esterase with important role in plant innate immunity, a novel RNA methyltransferase (H. influenzae yggJ (HI0303)), a novel spermidine/spermine N-acetyltransferase (B. subtilis PaiA), a novel methyltransferase or AdoMet binding protein (A. fulgidus AF_0241), an ATP:cob(I)alamin adenosyltransferase (B. subtilis YvqK), a novel carboxysome pore (E. coli EutN), a proline racemase homolog with a disrupted active site (B. melitensis BME11586), an FMN-dependent enzyme (S. pneumoniae SP_1951), and a 12-stranded beta-barrel with a novel fold (V. parahaemolyticus VPA1032).

-	~~{{STRUCTURE_1zbp\| PDB=1zbp \| SCENE= }}~~	+	Functional insights from structural genomics.,Forouhar F, Kuzin A, Seetharaman J, Lee I, Zhou W, Abashidze M, Chen Y, Yong W, Janjua H, Fang Y, Wang D, Cunningham K, Xiao R, Acton TB, Pichersky E, Klessig DF, Porter CW, Montelione GT, Tong L J Struct Funct Genomics. 2007 Sep;8(2-3):37-44. Epub 2007 Jun 23. PMID:17588214<ref>PMID:17588214</ref>

-	~~===X-Ray Crystal Structure~~ of ~~Protein VPA1032 from Vibrio parahaemolyticus~~. ~~Northeast Structural Genomics Consortium Target VpR44===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_17588214}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1zbp]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org~~/~~wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZBP OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:017588214<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Vibrio parahaemolyticus]]		[[Category: Vibrio parahaemolyticus]]
	[[Category: Acton, T B.]]		[[Category: Acton, T B.]]

OCA: Protected "1zbp" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 16:59:48 GMT

Protected "1zbp" [edit=sysop:move=sysop]

←Older revision

Revision as of 16:59, 5 January 2013

OCA at 16:59, 5 January 2013

OCA — Sat, 05 Jan 2013 16:59:46 GMT

←Older revision		Revision as of 16:59, 5 January 2013
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-	{{Seed}}
	[[Image:1zbp.png\|left\|200px]]		[[Image:1zbp.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1zbp", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1zbp\| PDB=1zbp \| SCENE= }}		{{STRUCTURE_1zbp\| PDB=1zbp \| SCENE= }}

	===X-Ray Crystal Structure of Protein VPA1032 from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR44===		===X-Ray Crystal Structure of Protein VPA1032 from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR44===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_17588214}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 17588214 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_17588214}}		{{ABSTRACT_PUBMED_17588214}}

	==About this Structure==		==About this Structure==
-	~~1ZBP~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/~~Vibrio_parahaemolyticus_rimd_2210633~~ Vibrio parahaemolyticus ~~rimd 2210633~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZBP OCA].	+	[[1zbp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus Vibrio parahaemolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZBP OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~17588214~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:017588214</ref><references group="xtra"/>
-	[[Category: Vibrio parahaemolyticus ~~rimd 2210633~~]]	+	[[Category: Vibrio parahaemolyticus]]
	[[Category: Acton, T B.]]		[[Category: Acton, T B.]]
	[[Category: Ciao, M.]]		[[Category: Ciao, M.]]
Line 41:		Line 29:
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Unknown function]]		[[Category: Unknown function]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 08:31:22 2009''