1zfg - Revision history

OCA at 09:04, 14 February 2024

OCA — Wed, 14 Feb 2024 09:04:40 GMT

←Older revision		Revision as of 09:04, 14 February 2024
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	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zfg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zfg OCA], [https://pdbe.org/1zfg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zfg RCSB], [https://www.ebi.ac.uk/pdbsum/1zfg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zfg ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zfg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zfg OCA], [https://pdbe.org/1zfg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zfg RCSB], [https://www.ebi.ac.uk/pdbsum/1zfg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zfg ProSAT]</span></td></tr>
	</table>		</table>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	The fundamental question of how sequence defines conformation is explicitly answered if the structures of all possible sequences of a macromolecule are determined. We present here a crystallographic screen of all permutations of the inverted repeat DNA sequence d(CCnnnN6N7N8GG), where N6, N7, and N8 are any of the four naturally occurring nucleotides. At this point, 63 of the 64 possible permutations have been crystallized from a defined set of solutions. When combined with previous work, we have assembled a data set of 37 single-crystal structures from 29 of the sequences in this motif, representing three structural classes of DNA (B-DNA, A-DNA, and four-stranded Holliday junctions). This data set includes a unique set of amphimorphic sequence, those that crystallize in two different conformations and serve to bridge the three structural phases. We have thus constructed a map of DNA structures that can be walked through in single nucleotide steps. Finally, the resulting data set allows us to dissect in detail the stabilization of and conformational variations within structural classes and identify significant conformational deviations within a particular structural class that result from sequence rather than crystal or crystallization effects.
-
-	How sequence defines structure: a crystallographic map of DNA structure and conformation.,Hays FA, Teegarden A, Jones ZJ, Harms M, Raup D, Watson J, Cavaliere E, Ho PS Proc Natl Acad Sci U S A. 2005 May 17;102(20):7157-62. Epub 2005 May 3. PMID:15870206<ref>PMID:15870206</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 1zfg" style="background-color:#fffaf0;"></div>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 10:30, 16 August 2023

OCA — Wed, 16 Aug 2023 10:30:57 GMT

←Older revision		Revision as of 10:30, 16 August 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1zfg]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZFG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZFG FirstGlance]. <br>		<table><tr><td colspan='2'>[[1zfg]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZFG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZFG FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~<div style='overflow: auto; max~~-~~height: 3em;'>[[1p4y\|1p4y]]~~, [[~~1p4z~~\|~~1p4z~~]], [[1dcw\|1dcw]], [[1dcv\|1dcv]], [[1zew\|1zew]], [[1zex\|1zex]], [[1zey\|1zey]], [[1zez\|1zez]], [[1zf0\|1zf0]], [[1zf1\|1zf1]], [[1zf2\|1zf2]], [[1zf3\|1zf3]], [[1zf4\|1zf4]], [[1zf5\|1zf5]], [[1zf6\|1zf6]], [[1zf7\|1zf7]], [[1zf8\|1zf8]], [[1zf9\|1zf9]], [[1zfa\|1zfa]], [[1zfb\|1zfb]], [[1zfc\|1zfc]], [[1zfe\|1zfe]], [[1zff\|1zff]], [[1zfh\|1zfh]], [[1zfm\|1zfm]]</div></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.75Å</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zfg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zfg OCA], [https://pdbe.org/1zfg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zfg RCSB], [https://www.ebi.ac.uk/pdbsum/1zfg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zfg ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zfg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zfg OCA], [https://pdbe.org/1zfg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zfg RCSB], [https://www.ebi.ac.uk/pdbsum/1zfg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zfg ProSAT]</span></td></tr>
	</table>		</table>
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Cavaliere, E]]	+	[[Category: Cavaliere E]]
-	[[Category: Harms, M]]	+	[[Category: Harms M]]
-	[[Category: Hays~~, F A~~]]	+	[[Category: Hays FA]]
-	[[Category: Ho~~, P S~~]]	+	[[Category: Ho PS]]
-	[[Category: Jones~~, Z J.R~~]]	+	[[Category: Jones ZJR]]
-	[[Category: Raup, D]]	+	[[Category: Raup D]]
-	[[Category: Teegarden~~, A T~~]]	+	[[Category: Teegarden AT]]
-	[[Category: Watson, J]]	+	[[Category: Watson J]]
-	~~[[Category: Crystallographic screen]]~~	+
-	~~[[Category: Dna]]~~	+
-	~~[[Category: Dna structure]]~~	+
-	~~[[Category: Holliday junction]]~~	+
-	~~[[Category: Molecular structure~~]]	+

OCA at 08:20, 10 November 2021

OCA — Wed, 10 Nov 2021 08:20:18 GMT

←Older revision		Revision as of 08:20, 10 November 2021
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	<StructureSection load='1zfg' size='340' side='right'caption='[[1zfg]], [[Resolution\|resolution]] 1.75Å' scene=''>		<StructureSection load='1zfg' size='340' side='right'caption='[[1zfg]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1zfg]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZFG OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1ZFG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1zfg]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZFG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZFG FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1p4y\|1p4y]], [[1p4z\|1p4z]], [[1dcw\|1dcw]], [[1dcv\|1dcv]], [[1zew\|1zew]], [[1zex\|1zex]], [[1zey\|1zey]], [[1zez\|1zez]], [[1zf0\|1zf0]], [[1zf1\|1zf1]], [[1zf2\|1zf2]], [[1zf3\|1zf3]], [[1zf4\|1zf4]], [[1zf5\|1zf5]], [[1zf6\|1zf6]], [[1zf7\|1zf7]], [[1zf8\|1zf8]], [[1zf9\|1zf9]], [[1zfa\|1zfa]], [[1zfb\|1zfb]], [[1zfc\|1zfc]], [[1zfe\|1zfe]], [[1zff\|1zff]], [[1zfh\|1zfh]], [[1zfm\|1zfm]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1p4y\|1p4y]], [[1p4z\|1p4z]], [[1dcw\|1dcw]], [[1dcv\|1dcv]], [[1zew\|1zew]], [[1zex\|1zex]], [[1zey\|1zey]], [[1zez\|1zez]], [[1zf0\|1zf0]], [[1zf1\|1zf1]], [[1zf2\|1zf2]], [[1zf3\|1zf3]], [[1zf4\|1zf4]], [[1zf5\|1zf5]], [[1zf6\|1zf6]], [[1zf7\|1zf7]], [[1zf8\|1zf8]], [[1zf9\|1zf9]], [[1zfa\|1zfa]], [[1zfb\|1zfb]], [[1zfc\|1zfc]], [[1zfe\|1zfe]], [[1zff\|1zff]], [[1zfh\|1zfh]], [[1zfm\|1zfm]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1zfg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zfg OCA], [~~http~~://pdbe.org/1zfg PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1zfg RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1zfg PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1zfg ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zfg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zfg OCA], [https://pdbe.org/1zfg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zfg RCSB], [https://www.ebi.ac.uk/pdbsum/1zfg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zfg ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 09:50, 5 February 2020

OCA — Wed, 05 Feb 2020 09:50:36 GMT

←Older revision		Revision as of 09:50, 5 February 2020
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	==CTC Duplex B-DNA==		==CTC Duplex B-DNA==
-	<StructureSection load='1zfg' size='340' side='right' caption='[[1zfg]], [[Resolution\|resolution]] 1.75Å' scene=''>	+	<StructureSection load='1zfg' size='340' side='right'caption='[[1zfg]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1zfg]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZFG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZFG FirstGlance]. <br>		<table><tr><td colspan='2'>[[1zfg]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZFG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZFG FirstGlance]. <br>
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Cavaliere, E]]		[[Category: Cavaliere, E]]
	[[Category: Harms, M]]		[[Category: Harms, M]]

OCA at 09:16, 2 May 2018

OCA — Wed, 02 May 2018 09:16:39 GMT

←Older revision		Revision as of 09:16, 2 May 2018
Line 1:		Line 1:
		+
	==CTC Duplex B-DNA==		==CTC Duplex B-DNA==
	<StructureSection load='1zfg' size='340' side='right' caption='[[1zfg]], [[Resolution\|resolution]] 1.75Å' scene=''>		<StructureSection load='1zfg' size='340' side='right' caption='[[1zfg]], [[Resolution\|resolution]] 1.75Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[1zfg]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZFG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZFG FirstGlance]. <br>		<table><tr><td colspan='2'>[[1zfg]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZFG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZFG FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1p4y\|1p4y]], [[1p4z\|1p4z]], [[1dcw\|1dcw]], [[1dcv\|1dcv]], [[1zew\|1zew]], [[1zex\|1zex]], [[1zey\|1zey]], [[1zez\|1zez]], [[1zf0\|1zf0]], [[1zf1\|1zf1]], [[1zf2\|1zf2]], [[1zf3\|1zf3]], [[1zf4\|1zf4]], [[1zf5\|1zf5]], [[1zf6\|1zf6]], [[1zf7\|1zf7]], [[1zf8\|1zf8]], [[1zf9\|1zf9]], [[1zfa\|1zfa]], [[1zfb\|1zfb]], [[1zfc\|1zfc]], [[1zfe\|1zfe]], [[1zff\|1zff]], [[1zfh\|1zfh]], [[1zfm\|1zfm]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1p4y\|1p4y]], [[1p4z\|1p4z]], [[1dcw\|1dcw]], [[1dcv\|1dcv]], [[1zew\|1zew]], [[1zex\|1zex]], [[1zey\|1zey]], [[1zez\|1zez]], [[1zf0\|1zf0]], [[1zf1\|1zf1]], [[1zf2\|1zf2]], [[1zf3\|1zf3]], [[1zf4\|1zf4]], [[1zf5\|1zf5]], [[1zf6\|1zf6]], [[1zf7\|1zf7]], [[1zf8\|1zf8]], [[1zf9\|1zf9]], [[1zfa\|1zfa]], [[1zfb\|1zfb]], [[1zfc\|1zfc]], [[1zfe\|1zfe]], [[1zff\|1zff]], [[1zfh\|1zfh]], [[1zfm\|1zfm]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zfg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zfg OCA], [http://pdbe.org/1zfg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1zfg RCSB], [http://www.ebi.ac.uk/pdbsum/1zfg PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zfg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zfg OCA], [http://pdbe.org/1zfg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1zfg RCSB], [http://www.ebi.ac.uk/pdbsum/1zfg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1zfg ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 02:44, 11 September 2015

OCA — Fri, 11 Sep 2015 02:44:46 GMT

←Older revision		Revision as of 02:44, 11 September 2015
Line 4:		Line 4:
	<table><tr><td colspan='2'>[[1zfg]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZFG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZFG FirstGlance]. <br>		<table><tr><td colspan='2'>[[1zfg]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZFG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZFG FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1p4y\|1p4y]], [[1p4z\|1p4z]], [[1dcw\|1dcw]], [[1dcv\|1dcv]], [[1zew\|1zew]], [[1zex\|1zex]], [[1zey\|1zey]], [[1zez\|1zez]], [[1zf0\|1zf0]], [[1zf1\|1zf1]], [[1zf2\|1zf2]], [[1zf3\|1zf3]], [[1zf4\|1zf4]], [[1zf5\|1zf5]], [[1zf6\|1zf6]], [[1zf7\|1zf7]], [[1zf8\|1zf8]], [[1zf9\|1zf9]], [[1zfa\|1zfa]], [[1zfb\|1zfb]], [[1zfc\|1zfc]], [[1zfe\|1zfe]], [[1zff\|1zff]], [[1zfh\|1zfh]], [[1zfm\|1zfm]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1p4y\|1p4y]], [[1p4z\|1p4z]], [[1dcw\|1dcw]], [[1dcv\|1dcv]], [[1zew\|1zew]], [[1zex\|1zex]], [[1zey\|1zey]], [[1zez\|1zez]], [[1zf0\|1zf0]], [[1zf1\|1zf1]], [[1zf2\|1zf2]], [[1zf3\|1zf3]], [[1zf4\|1zf4]], [[1zf5\|1zf5]], [[1zf6\|1zf6]], [[1zf7\|1zf7]], [[1zf8\|1zf8]], [[1zf9\|1zf9]], [[1zfa\|1zfa]], [[1zfb\|1zfb]], [[1zfc\|1zfc]], [[1zfe\|1zfe]], [[1zff\|1zff]], [[1zfh\|1zfh]], [[1zfm\|1zfm]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zfg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zfg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1zfg RCSB], [http://www.ebi.ac.uk/pdbsum/1zfg PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zfg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zfg OCA], [http://pdbe.org/1zfg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1zfg RCSB], [http://www.ebi.ac.uk/pdbsum/1zfg PDBsum]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 14:		Line 14:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1zfg" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 06:40, 22 December 2014

OCA — Mon, 22 Dec 2014 06:40:48 GMT

←Older revision		Revision as of 06:40, 22 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1zfg]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZFG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZFG FirstGlance]. <br>		<table><tr><td colspan='2'>[[1zfg]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZFG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZFG FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1p4y\|1p4y]], [[1p4z\|1p4z]], [[1dcw\|1dcw]], [[1dcv\|1dcv]], [[1zew\|1zew]], [[1zex\|1zex]], [[1zey\|1zey]], [[1zez\|1zez]], [[1zf0\|1zf0]], [[1zf1\|1zf1]], [[1zf2\|1zf2]], [[1zf3\|1zf3]], [[1zf4\|1zf4]], [[1zf5\|1zf5]], [[1zf6\|1zf6]], [[1zf7\|1zf7]], [[1zf8\|1zf8]], [[1zf9\|1zf9]], [[1zfa\|1zfa]], [[1zfb\|1zfb]], [[1zfc\|1zfc]], [[1zfe\|1zfe]], [[1zff\|1zff]], [[1zfh\|1zfh]], [[1zfm\|1zfm]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1p4y\|1p4y]], [[1p4z\|1p4z]], [[1dcw\|1dcw]], [[1dcv\|1dcv]], [[1zew\|1zew]], [[1zex\|1zex]], [[1zey\|1zey]], [[1zez\|1zez]], [[1zf0\|1zf0]], [[1zf1\|1zf1]], [[1zf2\|1zf2]], [[1zf3\|1zf3]], [[1zf4\|1zf4]], [[1zf5\|1zf5]], [[1zf6\|1zf6]], [[1zf7\|1zf7]], [[1zf8\|1zf8]], [[1zf9\|1zf9]], [[1zfa\|1zfa]], [[1zfb\|1zfb]], [[1zfc\|1zfc]], [[1zfe\|1zfe]], [[1zff\|1zff]], [[1zfh\|1zfh]], [[1zfm\|1zfm]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zfg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zfg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1zfg RCSB], [http://www.ebi.ac.uk/pdbsum/1zfg PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zfg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zfg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1zfg RCSB], [http://www.ebi.ac.uk/pdbsum/1zfg PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 18:		Line 18:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Cavaliere, E.]]	+	[[Category: Cavaliere, E]]
-	[[Category: Harms, M.]]	+	[[Category: Harms, M]]
-	[[Category: Hays, F A.]]	+	[[Category: Hays, F A]]
-	[[Category: Ho, P S.]]	+	[[Category: Ho, P S]]
-	[[Category: Jones, Z J.R.]]	+	[[Category: Jones, Z J.R]]
-	[[Category: Raup, D.]]	+	[[Category: Raup, D]]
-	[[Category: Teegarden, A T.]]	+	[[Category: Teegarden, A T]]
-	[[Category: Watson, J.]]	+	[[Category: Watson, J]]
	[[Category: Crystallographic screen]]		[[Category: Crystallographic screen]]
	[[Category: Dna]]		[[Category: Dna]]

OCA at 07:06, 9 June 2014

OCA — Mon, 09 Jun 2014 07:06:48 GMT

←Older revision		Revision as of 07:06, 9 June 2014
Line 1:		Line 1:
-	[[~~Image:~~1zfg.~~png~~\|~~left~~\|~~200px~~]]	+	==CTC Duplex B-DNA==
		+	<StructureSection load='1zfg' size='340' side='right' caption='[[1zfg]], [[Resolution\|resolution]] 1.75Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1zfg]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZFG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZFG FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1p4y\|1p4y]], [[1p4z\|1p4z]], [[1dcw\|1dcw]], [[1dcv\|1dcv]], [[1zew\|1zew]], [[1zex\|1zex]], [[1zey\|1zey]], [[1zez\|1zez]], [[1zf0\|1zf0]], [[1zf1\|1zf1]], [[1zf2\|1zf2]], [[1zf3\|1zf3]], [[1zf4\|1zf4]], [[1zf5\|1zf5]], [[1zf6\|1zf6]], [[1zf7\|1zf7]], [[1zf8\|1zf8]], [[1zf9\|1zf9]], [[1zfa\|1zfa]], [[1zfb\|1zfb]], [[1zfc\|1zfc]], [[1zfe\|1zfe]], [[1zff\|1zff]], [[1zfh\|1zfh]], [[1zfm\|1zfm]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zfg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zfg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1zfg RCSB], [http://www.ebi.ac.uk/pdbsum/1zfg PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The fundamental question of how sequence defines conformation is explicitly answered if the structures of all possible sequences of a macromolecule are determined. We present here a crystallographic screen of all permutations of the inverted repeat DNA sequence d(CCnnnN6N7N8GG), where N6, N7, and N8 are any of the four naturally occurring nucleotides. At this point, 63 of the 64 possible permutations have been crystallized from a defined set of solutions. When combined with previous work, we have assembled a data set of 37 single-crystal structures from 29 of the sequences in this motif, representing three structural classes of DNA (B-DNA, A-DNA, and four-stranded Holliday junctions). This data set includes a unique set of amphimorphic sequence, those that crystallize in two different conformations and serve to bridge the three structural phases. We have thus constructed a map of DNA structures that can be walked through in single nucleotide steps. Finally, the resulting data set allows us to dissect in detail the stabilization of and conformational variations within structural classes and identify significant conformational deviations within a particular structural class that result from sequence rather than crystal or crystallization effects.

-	~~{{STRUCTURE_1zfg\| PDB=1zfg \| SCENE= }}~~	+	How sequence defines structure: a crystallographic map of DNA structure and conformation.,Hays FA, Teegarden A, Jones ZJ, Harms M, Raup D, Watson J, Cavaliere E, Ho PS Proc Natl Acad Sci U S A. 2005 May 17;102(20):7157-62. Epub 2005 May 3. PMID:15870206<ref>PMID:15870206</ref>

-	~~===CTC Duplex B-DNA===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_15870206}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1zfg]] is~~ a ~~2 chain structure~~. ~~Full crystallographic information is available from [http://oca~~.~~weizmann~~.~~ac.il~~/~~oca-bin/ocashort?id=1ZFG OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:015870206<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Cavaliere, E.]]		[[Category: Cavaliere, E.]]
	[[Category: Harms, M.]]		[[Category: Harms, M.]]

OCA: Protected "1zfg" [edit=sysop:move=sysop]

OCA — Tue, 14 Aug 2012 18:58:59 GMT

Protected "1zfg" [edit=sysop:move=sysop]

←Older revision

Revision as of 18:58, 14 August 2012

OCA at 18:58, 14 August 2012

OCA — Tue, 14 Aug 2012 18:58:58 GMT

←Older revision		Revision as of 18:58, 14 August 2012
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-	{{Seed}}
	[[Image:1zfg.png\|left\|200px]]		[[Image:1zfg.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1zfg", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1zfg\| PDB=1zfg \| SCENE= }}		{{STRUCTURE_1zfg\| PDB=1zfg \| SCENE= }}

	===CTC Duplex B-DNA===		===CTC Duplex B-DNA===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_15870206}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 15870206 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_15870206}}		{{ABSTRACT_PUBMED_15870206}}

	==About this Structure==		==About this Structure==
-	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZFG OCA].	+	[[1zfg]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZFG OCA].

	==Reference==		==Reference==
-	How sequence defines structure: a crystallographic map of DNA structure and conformation., Hays FA, Teegarden A, Jones ZJ, Harms M, Raup D, Watson J, Cavaliere E, Ho PS, Proc Natl Acad Sci U S A. 2005 May 17;102(20):7157-62. Epub 2005 May 3. PMID:~~[http://www.ncbi.nlm.nih.gov~~/~~pubmed~~/~~15870206 15870206]~~	+	<ref group="xtra">PMID:015870206</ref><references group="xtra"/>
	[[Category: Cavaliere, E.]]		[[Category: Cavaliere, E.]]
	[[Category: Harms, M.]]		[[Category: Harms, M.]]
Line 33:		Line 21:
	[[Category: Watson, J.]]		[[Category: Watson, J.]]
	[[Category: Crystallographic screen]]		[[Category: Crystallographic screen]]
		+	[[Category: Dna]]
	[[Category: Dna structure]]		[[Category: Dna structure]]
	[[Category: Holliday junction]]		[[Category: Holliday junction]]
	[[Category: Molecular structure]]		[[Category: Molecular structure]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jul 28 17:51:48 2008''