1znt - Revision history

OCA at 10:31, 16 August 2023

OCA — Wed, 16 Aug 2023 10:31:39 GMT

←Older revision		Revision as of 10:31, 16 August 2023
Line 1:		Line 1:

	==18 NMR structures of AcAMP2-Like Peptide with non Natural Fluoroaromatic Residue (AcAMP2F18Pff/Y20Pff) complex with N,N,N-triacetylchitotriose==		==18 NMR structures of AcAMP2-Like Peptide with non Natural Fluoroaromatic Residue (AcAMP2F18Pff/Y20Pff) complex with N,N,N-triacetylchitotriose==
-	<StructureSection load='1znt' size='340' side='right'caption='[[1znt~~]], [[NMR_Ensembles_of_Models \| 18 NMR models~~]]' scene=''>	+	<StructureSection load='1znt' size='340' side='right'caption='[[1znt]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1znt]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZNT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZNT FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1znt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Amaranthus_caudatus Amaranthus caudatus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZNT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZNT FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene>, <scene name='pdbligand=PFF:4-FLUORO-L-PHENYLALANINE'>PFF</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene>, <scene name='pdbligand=PFF:4-FLUORO-L-PHENYLALANINE'>PFF</scene>, <scene name='pdbligand=PRD_900017:triacetyl-beta-chitotriose'>PRD_900017</scene></td></tr>
-	~~<tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow~~: ~~auto; max~~-~~height: 3em;~~'>~~[[1mmc\|1mmc]]~~</~~div~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1znt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1znt OCA], [https://pdbe.org/1znt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1znt RCSB], [https://www.ebi.ac.uk/pdbsum/1znt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1znt ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1znt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1znt OCA], [https://pdbe.org/1znt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1znt RCSB], [https://www.ebi.ac.uk/pdbsum/1znt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1znt ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/AMP_AMACA AMP_AMACA] Chitin-binding protein with a defensive function against numerous chitin containing fungal pathogens. It is also a potent inhibitor of Gram-positive bacteria.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 22:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Amaranthus caudatus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Aboitiz, N]]	+	[[Category: Aboitiz N]]
-	[[Category: Andreu, C]]	+	[[Category: Andreu C]]
-	[[Category: Asensio, G]]	+	[[Category: Asensio G]]
-	[[Category: Asensio~~, J L~~]]	+	[[Category: Asensio JL]]
-	[[Category: Canada~~, F J~~]]	+	[[Category: Canada FJ]]
-	[[Category: Chavez~~, M I~~]]	+	[[Category: Chavez MI]]
-	[[Category: Freire, F]]	+	[[Category: Freire F]]
-	[[Category: Groves, P]]	+	[[Category: Groves P]]
-	[[Category: Jimenez-Barbero, J]]	+	[[Category: Jimenez-Barbero J]]
-	[[Category: Muraki, M]]	+	[[Category: Muraki M]]
-	[[Category: Vidal, P]]	+	[[Category: Vidal P]]
-	~~[[Category: Alfa-helix]]~~	+
-	~~[[Category: Anti-parallel beta-sheet]]~~	+
-	~~[[Category: Antimicrobial protein~~]]	+

OCA at 08:22, 10 November 2021

OCA — Wed, 10 Nov 2021 08:22:53 GMT

←Older revision		Revision as of 08:22, 10 November 2021
Line 3:		Line 3:
	<StructureSection load='1znt' size='340' side='right'caption='[[1znt]], [[NMR_Ensembles_of_Models \| 18 NMR models]]' scene=''>		<StructureSection load='1znt' size='340' side='right'caption='[[1znt]], [[NMR_Ensembles_of_Models \| 18 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1znt]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZNT OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1ZNT FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1znt]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZNT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZNT FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene>, <scene name='pdbligand=PFF:4-FLUORO-L-PHENYLALANINE'>PFF</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene>, <scene name='pdbligand=PFF:4-FLUORO-L-PHENYLALANINE'>PFF</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1mmc\|1mmc]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1mmc\|1mmc]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1znt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1znt OCA], [~~http~~://pdbe.org/1znt PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1znt RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1znt PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1znt ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1znt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1znt OCA], [https://pdbe.org/1znt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1znt RCSB], [https://www.ebi.ac.uk/pdbsum/1znt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1znt ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 09:24, 5 February 2020

OCA — Wed, 05 Feb 2020 09:24:05 GMT

←Older revision		Revision as of 09:24, 5 February 2020
Line 1:		Line 1:

	==18 NMR structures of AcAMP2-Like Peptide with non Natural Fluoroaromatic Residue (AcAMP2F18Pff/Y20Pff) complex with N,N,N-triacetylchitotriose==		==18 NMR structures of AcAMP2-Like Peptide with non Natural Fluoroaromatic Residue (AcAMP2F18Pff/Y20Pff) complex with N,N,N-triacetylchitotriose==
-	<StructureSection load='1znt' size='340' side='right' caption='[[1znt]], [[NMR_Ensembles_of_Models \| 18 NMR models]]' scene=''>	+	<StructureSection load='1znt' size='340' side='right'caption='[[1znt]], [[NMR_Ensembles_of_Models \| 18 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1znt]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZNT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZNT FirstGlance]. <br>		<table><tr><td colspan='2'>[[1znt]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZNT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZNT FirstGlance]. <br>
Line 22:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Aboitiz, N]]		[[Category: Aboitiz, N]]
	[[Category: Andreu, C]]		[[Category: Andreu, C]]

OCA at 08:49, 2 May 2018

OCA — Wed, 02 May 2018 08:49:39 GMT

←Older revision		Revision as of 08:49, 2 May 2018
Line 1:		Line 1:
		+
	==18 NMR structures of AcAMP2-Like Peptide with non Natural Fluoroaromatic Residue (AcAMP2F18Pff/Y20Pff) complex with N,N,N-triacetylchitotriose==		==18 NMR structures of AcAMP2-Like Peptide with non Natural Fluoroaromatic Residue (AcAMP2F18Pff/Y20Pff) complex with N,N,N-triacetylchitotriose==
	<StructureSection load='1znt' size='340' side='right' caption='[[1znt]], [[NMR_Ensembles_of_Models \| 18 NMR models]]' scene=''>		<StructureSection load='1znt' size='340' side='right' caption='[[1znt]], [[NMR_Ensembles_of_Models \| 18 NMR models]]' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene>, <scene name='pdbligand=PFF:4-FLUORO-L-PHENYLALANINE'>PFF</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene>, <scene name='pdbligand=PFF:4-FLUORO-L-PHENYLALANINE'>PFF</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1mmc\|1mmc]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1mmc\|1mmc]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1znt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1znt OCA], [http://pdbe.org/1znt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1znt RCSB], [http://www.ebi.ac.uk/pdbsum/1znt PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1znt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1znt OCA], [http://pdbe.org/1znt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1znt RCSB], [http://www.ebi.ac.uk/pdbsum/1znt PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1znt ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 11:54, 11 September 2015

OCA — Fri, 11 Sep 2015 11:54:35 GMT

←Older revision		Revision as of 11:54, 11 September 2015
Line 6:		Line 6:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene>, <scene name='pdbligand=PFF:4-FLUORO-L-PHENYLALANINE'>PFF</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene>, <scene name='pdbligand=PFF:4-FLUORO-L-PHENYLALANINE'>PFF</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1mmc\|1mmc]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1mmc\|1mmc]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1znt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1znt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1znt RCSB], [http://www.ebi.ac.uk/pdbsum/1znt PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1znt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1znt OCA], [http://pdbe.org/1znt PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1znt RCSB], [http://www.ebi.ac.uk/pdbsum/1znt PDBsum]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 16:		Line 16:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1znt" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 10:13, 25 January 2015

OCA — Sun, 25 Jan 2015 10:13:17 GMT

←Older revision		Revision as of 10:13, 25 January 2015
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Aboitiz, N.]]	+	[[Category: Aboitiz, N]]
-	[[Category: Andreu, C.]]	+	[[Category: Andreu, C]]
-	[[Category: Asensio, G.]]	+	[[Category: Asensio, G]]
-	[[Category: Asensio, J L.]]	+	[[Category: Asensio, J L]]
-	[[Category: Canada, F J.]]	+	[[Category: Canada, F J]]
-	[[Category: Chavez, M I.]]	+	[[Category: Chavez, M I]]
-	[[Category: Freire, F.]]	+	[[Category: Freire, F]]
-	[[Category: Groves, P.]]	+	[[Category: Groves, P]]
-	[[Category: Jimenez-Barbero, J.]]	+	[[Category: Jimenez-Barbero, J]]
-	[[Category: Muraki, M.]]	+	[[Category: Muraki, M]]
-	[[Category: Vidal, P.]]	+	[[Category: Vidal, P]]
	[[Category: Alfa-helix]]		[[Category: Alfa-helix]]
	[[Category: Anti-parallel beta-sheet]]		[[Category: Anti-parallel beta-sheet]]
	[[Category: Antimicrobial protein]]		[[Category: Antimicrobial protein]]

OCA at 11:53, 29 October 2014

OCA — Wed, 29 Oct 2014 11:53:42 GMT

←Older revision		Revision as of 11:53, 29 October 2014
Line 1:		Line 1:
-	[[~~Image:~~1znt.~~png~~\|~~left~~\|~~200px~~]]	+	==18 NMR structures of AcAMP2-Like Peptide with non Natural Fluoroaromatic Residue (AcAMP2F18Pff/Y20Pff) complex with N,N,N-triacetylchitotriose==
		+	<StructureSection load='1znt' size='340' side='right' caption='[[1znt]], [[NMR_Ensembles_of_Models \| 18 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1znt]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZNT OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZNT FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene>, <scene name='pdbligand=PFF:4-FLUORO-L-PHENYLALANINE'>PFF</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1mmc\|1mmc]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1znt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1znt OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1znt RCSB], [http://www.ebi.ac.uk/pdbsum/1znt PDBsum]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The specific interaction of a variety of modified hevein domains to chitooligosaccharides has been studied by NMR spectroscopy in order to assess the importance of aromatic-carbohydrate interactions for the molecular recognition of neutral sugars. These mutant AcAMP2-like peptides, which have 4-fluoro-phenylalanine, tryptophan, or 2-naphthylalanine at the key interacting positions, have been prepared by solid-phase synthesis. Their three-dimensional structures, when bound to the chitin-derived trisaccharide, have been deduced by NMR spectroscopy. By using DYANA and restrained molecular dynamics simulations with the AMBER 5.0 force field, the three-dimensional structures of the protein-sugar complexes have been obtained. The thermodynamic analysis of the interactions that occur upon complex formation have also been carried out. Regarding binding affinity, the obtained data have permitted the deduction that the larger the aromatic group, the higher the association constant and the binding enthalpy. In all cases, entropy opposes binding. In contrast, deactivation of the aromatic rings by attaching fluorine atoms decreases the binding affinity, with a concomitant decrease in enthalpy. The role of the chemical nature of the aromatic ring for establishing sugar contacts has been thus evaluated.

-	~~{{STRUCTURE_1znt\| PDB=1znt \| SCENE= }}~~	+	On the importance of carbohydrate-aromatic interactions for the molecular recognition of oligosaccharides by proteins: NMR studies of the structure and binding affinity of AcAMP2-like peptides with non-natural naphthyl and fluoroaromatic residues.,Chavez MI, Andreu C, Vidal P, Aboitiz N, Freire F, Groves P, Asensio JL, Asensio G, Muraki M, Canada FJ, Jimenez-Barbero J Chemistry. 2005 Nov 18;11(23):7060-74. PMID:16220560<ref>PMID:16220560</ref>

-	~~===18 NMR structures of AcAMP2-Like Peptide with non Natural Fluoroaromatic Residue (AcAMP2F18Pff~~/~~Y20Pff) complex with N~~,~~N,N-triacetylchitotriose===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_16220560}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1znt]] is~~ a ~~1 chain structure~~. ~~Full experimental information is available from [http://oca~~.~~weizmann~~.~~ac.il~~/~~oca-bin/ocashort?id=1ZNT OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:016220560<~~/~~ref~~><~~ref group="xtra">PMID:008627629</ref><ref group="xtra">PMID:015368576</ref><references group="xtra"~~/>	+
	[[Category: Aboitiz, N.]]		[[Category: Aboitiz, N.]]
	[[Category: Andreu, C.]]		[[Category: Andreu, C.]]

OCA at 12:18, 23 January 2013

OCA — Wed, 23 Jan 2013 12:18:01 GMT

←Older revision		Revision as of 12:18, 23 January 2013
Line 1:		Line 1:
	[[Image:1znt.png\|left\|200px]]		[[Image:1znt.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1znt", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1znt\| PDB=1znt \| SCENE= }}		{{STRUCTURE_1znt\| PDB=1znt \| SCENE= }}

	===18 NMR structures of AcAMP2-Like Peptide with non Natural Fluoroaromatic Residue (AcAMP2F18Pff/Y20Pff) complex with N,N,N-triacetylchitotriose===		===18 NMR structures of AcAMP2-Like Peptide with non Natural Fluoroaromatic Residue (AcAMP2F18Pff/Y20Pff) complex with N,N,N-triacetylchitotriose===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_16220560}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 16220560 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_16220560}}		{{ABSTRACT_PUBMED_16220560}}

Line 22:		Line 11:

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~16220560~~</ref><ref group="xtra">PMID:~~8627629~~</ref><ref group="xtra">PMID:~~12144516</ref><ref group="xtra">PMID:15368576</ref><ref group="xtra">PMID:10842338</ref><ref group="xtra">PMID:10903932</ref><ref group="xtra">PMID:10877847~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:016220560</ref><ref group="xtra">PMID:008627629</ref><ref group="xtra">PMID:015368576</ref><references group="xtra"/>
	[[Category: Aboitiz, N.]]		[[Category: Aboitiz, N.]]
	[[Category: Andreu, C.]]		[[Category: Andreu, C.]]

OCA: Protected "1znt" [edit=sysop:move=sysop]

OCA — Mon, 14 Mar 2011 21:31:02 GMT

Protected "1znt" [edit=sysop:move=sysop]

←Older revision

Revision as of 21:31, 14 March 2011

OCA at 21:30, 14 March 2011

OCA — Mon, 14 Mar 2011 21:30:58 GMT

←Older revision		Revision as of 21:30, 14 March 2011
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1znt.png\|left\|200px]]		[[Image:1znt.png\|left\|200px]]

Line 20:		Line 19:

	==About this Structure==		==About this Structure==
-	Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZNT OCA].	+	[[1znt]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZNT OCA].

	==Reference==		==Reference==
-	On the importance of carbohydrate-aromatic interactions for the molecular recognition of oligosaccharides by proteins: NMR studies of the structure and binding affinity of AcAMP2-like peptides with non-natural naphthyl and fluoroaromatic residues., Chavez MI, Andreu C, Vidal P, Aboitiz N, Freire F, Groves P, Asensio JL, Asensio G, Muraki M, Canada FJ, Jimenez-Barbero J, Chemistry. 2005 Nov 18;11(23):7060-74. PMID:~~[http:~~/~~/www.ncbi.nlm.nih.gov/pubmed/16220560 16220560]~~	+	<ref group="xtra">PMID:16220560</ref><ref group="xtra">PMID:8627629</ref><ref group="xtra">PMID:12144516</ref><ref group="xtra">PMID:15368576</ref><ref group="xtra">PMID:10842338</ref><ref group="xtra">PMID:10903932</ref><ref group="xtra">PMID:10877847</ref><references group="xtra"/>
-		+
-	H NMR study of the solution structure of Ac-AMP2, a sugar binding antimicrobial protein isolated from Amaranthus caudatus., Martins JC, Maes D, Loris R, Pepermans HA, Wyns L, Willem R, Verheyden P, J Mol Biol. 1996 May 3;258(2):322-33. PMID:~~[http://www.ncbi.nlm.nih.gov/pubmed/8627629~~ 8627629]	+
-		+
-	~~The importance of CH~~/~~pi interactions to the function of carbohydrate binding proteins., Muraki M, Protein Pept Lett. 2002 Jun;9(3):195-209.~~ PMID:~~[http:~~/~~/www.ncbi.nlm.nih.gov/pubmed/12144516 12144516]~~	+
-		+
-	NMR and modeling studies of protein-carbohydrate interactions: synthesis, three-dimensional structure, and recognition properties of a minimum hevein domain with binding affinity for chitooligosaccharides., Aboitiz N, Vila-Perello M, Groves P, Asensio JL, Andreu D, Canada FJ, Jimenez-Barbero J, Chembiochem. 2004 Sep 6;5(9):1245-55. PMID:~~[http://www.ncbi.nlm.nih.gov/pubmed/~~15368576 ~~15368576]~~	+
-		+
-	~~NMR investigations of protein-carbohydrate interactions: studies on the relevance of Trp~~/~~Tyr variations in lectin binding sites as deduced from titration microcalorimetry and NMR studies on hevein domains. Determination of the NMR structure of the complex between pseudohevein and N,N',N~~"~~-triacetylchitotriose., Asensio JL, Siebert HC, von Der Lieth CW, Laynez J, Bruix M, Soedjanaamadja UM, Beintema JJ, Canada FJ, Gabius HJ, Jimenez-Barbero J, Proteins. 2000 Aug 1;40(2):218-36.~~ PMID:~~[http:~~/~~/www.ncbi.nlm.nih.gov/pubmed/10842338 10842338]~~	+
-		+
-	Structural basis for chitin recognition by defense proteins: GlcNAc residues are bound in a multivalent fashion by extended binding sites in hevein domains., Asensio JL, Canada FJ, Siebert HC, Laynez J, Poveda A, Nieto PM, Soedjanaamadja UM, Gabius HJ, Jimenez-Barbero J, Chem Biol. 2000 Jul;7(7):529-43. PMID:~~[http:~~/~~/www.ncbi.nlm.nih.gov/pubmed/10903932 10903932]~~	+
-		+
-	Chemically prepared hevein domains: effect of C-terminal truncation and the mutagenesis of aromatic residues on the affinity for chitin., Muraki M, Morii H, Harata K, Protein Eng. 2000 Jun;13(6):385-9. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/10877847 10877847]~~	+
	[[Category: Aboitiz, N.]]		[[Category: Aboitiz, N.]]
	[[Category: Andreu, C.]]		[[Category: Andreu, C.]]
Line 49:		Line 36:
	[[Category: Alfa-helix]]		[[Category: Alfa-helix]]
	[[Category: Anti-parallel beta-sheet]]		[[Category: Anti-parallel beta-sheet]]
-		+	[[Category: Antimicrobial protein]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Tue Jul 29 05:23:02 2008''~~	+