1zpv - Revision history

OCA at 08:12, 15 May 2024

OCA — Wed, 15 May 2024 08:12:15 GMT

←Older revision		Revision as of 08:12, 15 May 2024
Line 3:		Line 3:
	<StructureSection load='1zpv' size='340' side='right'caption='[[1zpv]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='1zpv' size='340' side='right'caption='[[1zpv]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1zpv]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Strpn Strpn~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZPV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZPV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1zpv]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pneumoniae_TIGR4 Streptococcus pneumoniae TIGR4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZPV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZPV FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=K:POTASSIUM+ION'>K</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.9Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~MSE~~:~~SELENOMETHIONINE~~'>~~MSE~~</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">SP0238 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=170187 STRPN])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zpv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zpv OCA], [https://pdbe.org/1zpv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zpv RCSB], [https://www.ebi.ac.uk/pdbsum/1zpv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zpv ProSAT], [https://www.topsan.org/Proteins/MCSG/1zpv TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zpv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zpv OCA], [https://pdbe.org/1zpv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zpv RCSB], [https://www.ebi.ac.uk/pdbsum/1zpv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zpv ProSAT], [https://www.topsan.org/Proteins/MCSG/1zpv TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Y238_STRPN Y238_STRPN]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 22:		Line 23:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Strpn~~]]	+	[[Category: Streptococcus pneumoniae TIGR4]]
-	[[Category: Abdullah, J]]	+	[[Category: Abdullah J]]
-	[[Category: Collart, F]]	+	[[Category: Collart F]]
-	[[Category: Hatzos, C]]	+	[[Category: Hatzos C]]
-	[[Category: Joachimiak, A]]	+	[[Category: Joachimiak A]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Osipiuk J]]
-	[[Category: Osipiuk, J]]	+
-	~~[[Category: Act domain]]~~	+
-	~~[[Category: Mcsg]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 08:14, 27 January 2021

OCA — Wed, 27 Jan 2021 08:14:43 GMT

←Older revision		Revision as of 08:14, 27 January 2021
Line 1:		Line 1:

	==ACT domain protein from Streptococcus pneumoniae==		==ACT domain protein from Streptococcus pneumoniae==
-	<StructureSection load='1zpv' size='340' side='right' caption='[[1zpv]], [[Resolution\|resolution]] 1.90Å' scene=''>	+	<StructureSection load='1zpv' size='340' side='right'caption='[[1zpv]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1zpv]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Strpn Strpn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZPV OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1ZPV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1zpv]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Strpn Strpn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZPV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZPV FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SP0238 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=170187 STRPN])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SP0238 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=170187 STRPN])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1zpv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zpv OCA], [~~http~~://pdbe.org/1zpv PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1zpv RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1zpv PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1zpv ProSAT], [~~http~~://www.topsan.org/Proteins/MCSG/1zpv TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zpv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zpv OCA], [https://pdbe.org/1zpv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zpv RCSB], [https://www.ebi.ac.uk/pdbsum/1zpv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zpv ProSAT], [https://www.topsan.org/Proteins/MCSG/1zpv TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 21:		Line 21:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Strpn]]		[[Category: Strpn]]
	[[Category: Abdullah, J]]		[[Category: Abdullah, J]]

OCA at 08:45, 2 May 2018

OCA — Wed, 02 May 2018 08:45:42 GMT

←Older revision		Revision as of 08:45, 2 May 2018
Line 1:		Line 1:
		+
	==ACT domain protein from Streptococcus pneumoniae==		==ACT domain protein from Streptococcus pneumoniae==
	<StructureSection load='1zpv' size='340' side='right' caption='[[1zpv]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='1zpv' size='340' side='right' caption='[[1zpv]], [[Resolution\|resolution]] 1.90Å' scene=''>
Line 6:		Line 7:
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SP0238 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=170187 STRPN])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SP0238 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=170187 STRPN])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zpv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zpv OCA], [http://pdbe.org/1zpv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1zpv RCSB], [http://www.ebi.ac.uk/pdbsum/1zpv PDBsum], [http://www.topsan.org/Proteins/MCSG/1zpv TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zpv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zpv OCA], [http://pdbe.org/1zpv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1zpv RCSB], [http://www.ebi.ac.uk/pdbsum/1zpv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1zpv ProSAT], [http://www.topsan.org/Proteins/MCSG/1zpv TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zp/1zpv_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zp/1zpv_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 20:04, 7 February 2016

OCA — Sun, 07 Feb 2016 20:04:29 GMT

←Older revision		Revision as of 20:04, 7 February 2016
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1zpv ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 04:35, 10 September 2015

OCA — Thu, 10 Sep 2015 04:35:06 GMT

←Older revision		Revision as of 04:35, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1zpv' size='340' side='right' caption='[[1zpv]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='1zpv' size='340' side='right' caption='[[1zpv]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1zpv]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Streptococcus_pneumoniae_tigr4 Streptococcus pneumoniae tigr4~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZPV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZPV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1zpv]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Strpn Strpn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZPV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZPV FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SP0238 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=170187 ~~Streptococcus pneumoniae TIGR4~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SP0238 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=170187 STRPN])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zpv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zpv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1zpv RCSB], [http://www.ebi.ac.uk/pdbsum/1zpv PDBsum], [http://www.topsan.org/Proteins/MCSG/1zpv TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zpv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zpv OCA], [http://pdbe.org/1zpv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1zpv RCSB], [http://www.ebi.ac.uk/pdbsum/1zpv PDBsum], [http://www.topsan.org/Proteins/MCSG/1zpv TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Streptococcus pneumoniae tigr4~~]]	+	[[Category: Strpn]]
	[[Category: Abdullah, J]]		[[Category: Abdullah, J]]
	[[Category: Collart, F]]		[[Category: Collart, F]]

OCA at 17:55, 24 December 2014

OCA — Wed, 24 Dec 2014 17:55:38 GMT

←Older revision		Revision as of 17:55, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1zpv]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae_tigr4 Streptococcus pneumoniae tigr4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZPV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZPV FirstGlance]. <br>		<table><tr><td colspan='2'>[[1zpv]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae_tigr4 Streptococcus pneumoniae tigr4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZPV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZPV FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SP0238 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=170187 Streptococcus pneumoniae TIGR4])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SP0238 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=170187 Streptococcus pneumoniae TIGR4])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zpv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zpv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1zpv RCSB], [http://www.ebi.ac.uk/pdbsum/1zpv PDBsum], [http://www.topsan.org/Proteins/MCSG/1zpv TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zpv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zpv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1zpv RCSB], [http://www.ebi.ac.uk/pdbsum/1zpv PDBsum], [http://www.topsan.org/Proteins/MCSG/1zpv TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Streptococcus pneumoniae tigr4]]		[[Category: Streptococcus pneumoniae tigr4]]
-	[[Category: Abdullah, J.]]	+	[[Category: Abdullah, J]]
-	[[Category: Collart, F.]]	+	[[Category: Collart, F]]
-	[[Category: Hatzos, C.]]	+	[[Category: Hatzos, C]]
-	[[Category: Joachimiak, A.]]	+	[[Category: Joachimiak, A]]
-	[[Category: ~~MCSG, Midwest Center for~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Osipiuk, J.]]	+	[[Category: Osipiuk, J]]
	[[Category: Act domain]]		[[Category: Act domain]]
	[[Category: Mcsg]]		[[Category: Mcsg]]
-	[[Category: ~~Midwest center for structural genomic]]~~	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category:~~ Protein structure initiative]]	+
-	~~[[Category: Psi]]~~	+
-	~~[[Category: Structural genomic~~]]	+
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 00:40, 30 September 2014

OCA — Tue, 30 Sep 2014 00:40:45 GMT

←Older revision		Revision as of 00:40, 30 September 2014
Line 1:		Line 1:
-	~~[[Image:1zpv.png\|left\|200px]]~~	+	==ACT domain protein from Streptococcus pneumoniae==
-		+	<StructureSection load='1zpv' size='340' side='right' caption='[[1zpv]], [[Resolution\|resolution]] 1.90Å' scene=''>
-	~~{{STRUCTURE_1zpv\| PDB=1zpv \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[1zpv]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae_tigr4 Streptococcus pneumoniae tigr4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZPV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZPV FirstGlance]. <br>
-	===ACT domain protein from Streptococcus pneumoniae===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">SP0238 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=170187 Streptococcus pneumoniae TIGR4])</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zpv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zpv OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1zpv RCSB], [http://www.ebi.ac.uk/pdbsum/1zpv PDBsum], [http://www.topsan.org/Proteins/MCSG/1zpv TOPSAN]</span></td></tr>
-	[[1zpv]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae_tigr4 Streptococcus pneumoniae tigr4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZPV OCA].	+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zp/1zpv_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Streptococcus pneumoniae tigr4]]		[[Category: Streptococcus pneumoniae tigr4]]
	[[Category: Abdullah, J.]]		[[Category: Abdullah, J.]]

OCA: Protected "1zpv" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 16:59:52 GMT

Protected "1zpv" [edit=sysop:move=sysop]

←Older revision

Revision as of 16:59, 5 January 2013

OCA at 16:59, 5 January 2013

OCA — Sat, 05 Jan 2013 16:59:49 GMT

←Older revision		Revision as of 16:59, 5 January 2013
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-	{{Seed}}
	[[Image:1zpv.png\|left\|200px]]		[[Image:1zpv.png\|left\|200px]]

-	<!--
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-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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	{{STRUCTURE_1zpv\| PDB=1zpv \| SCENE= }}		{{STRUCTURE_1zpv\| PDB=1zpv \| SCENE= }}

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	==About this Structure==		==About this Structure==
-	~~1ZPV~~ is a 3 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/~~Streptococcus_pneumoniae~~ Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZPV OCA].	+	[[1zpv]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae_tigr4 Streptococcus pneumoniae tigr4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZPV OCA].
-	[[Category: Streptococcus pneumoniae]]	+	[[Category: Streptococcus pneumoniae tigr4]]
	[[Category: Abdullah, J.]]		[[Category: Abdullah, J.]]
	[[Category: Collart, F.]]		[[Category: Collart, F.]]
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	[[Category: Psi]]		[[Category: Psi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-		+	[[Category: Unknown function]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Sun Nov 16 10:45:36 2008''~~	+

OCA at 08:45, 16 November 2008

OCA — Sun, 16 Nov 2008 08:45:39 GMT

←Older revision		Revision as of 08:45, 16 November 2008
Line 14:		Line 14:

	==About this Structure==		==About this Structure==
-	1ZPV is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZPV OCA].	+	1ZPV is a 3 chains structure of sequences from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZPV OCA].
-	~~[[Category: Single protein]]~~	+
	[[Category: Streptococcus pneumoniae]]		[[Category: Streptococcus pneumoniae]]
	[[Category: Abdullah, J.]]		[[Category: Abdullah, J.]]
Line 30:		Line 29:
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun ~~Sep 28~~ 16:35:43 2008''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Nov 16 10:45:36 2008''