1zs3 - Revision history

OCA at 07:13, 23 August 2023

OCA — Wed, 23 Aug 2023 07:13:37 GMT

←Older revision		Revision as of 07:13, 23 August 2023
Line 3:		Line 3:
	<StructureSection load='1zs3' size='340' side='right'caption='[[1zs3]], [[Resolution\|resolution]] 2.70Å' scene=''>		<StructureSection load='1zs3' size='340' side='right'caption='[[1zs3]], [[Resolution\|resolution]] 2.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1zs3]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"bacterium_lactis"_lister_1873 "bacterium~~ lactis~~" lister 1873~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZS3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZS3 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1zs3]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactococcus_lactis Lactococcus lactis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZS3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZS3 FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style='overflow: auto; max-height: 3em;'>[[1zuj\|1zuj]]</div></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.7Å</td></tr>
-	~~<tr~~ id~~='gene'><td class~~="~~sblockLbl~~">~~<b>~~[[~~Gene~~\|~~Gene:~~]]~~</b></td><td class="sblockDat">flpB ([https://www~~.~~ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info~~&~~srchmode=5&id=1358 "Bacterium lactis" Lister 1873])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zs3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zs3 OCA], [https://pdbe.org/1zs3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zs3 RCSB], [https://www.ebi.ac.uk/pdbsum/1zs3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zs3 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zs3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zs3 OCA], [https://pdbe.org/1zs3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zs3 RCSB], [https://www.ebi.ac.uk/pdbsum/1zs3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zs3 ProSAT]</span></td></tr>
	</table>		</table>
Line 31:		Line 30:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacterium~~ lactis ~~lister 1873~~]]	+	[[Category: Lactococcus lactis]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Artymiuk~~, P J~~]]	+	[[Category: Artymiuk PJ]]
-	[[Category: Bullough~~, P A~~]]	+	[[Category: Bullough PA]]
-	[[Category: Carradus, M]]	+	[[Category: Carradus M]]
-	[[Category: Gasson~~, M J~~]]	+	[[Category: Gasson MJ]]
-	[[Category: Green, J]]	+	[[Category: Green J]]
-	[[Category: Norte~~, V A~~]]	+	[[Category: Norte VA]]
-	[[Category: Sedelnikova~~, S E~~]]	+	[[Category: Sedelnikova SE]]
-	[[Category: Shearman~~, C A~~]]	+	[[Category: Shearman CA]]
-	[[Category: Stillman~~, T J~~]]	+	[[Category: Stillman TJ]]
-	[[Category: Tzokov, S]]	+	[[Category: Tzokov S]]
-	[[Category: Upadhyay, M]]	+	[[Category: Upadhyay M]]
-	[[Category: Williams~~, C H]]~~	+	[[Category: Williams CH]]
-	~~[[Category: Dna binding]]~~	+
-	~~[[Category: Dna binding protein]]~~	+
-	~~[[Category: Dp]]~~	+
-	~~[[Category: Lactic acid bacteria]]~~	+
-	~~[[Category: Oxidative stress~~]]	+

OCA at 08:15, 27 January 2021

OCA — Wed, 27 Jan 2021 08:15:38 GMT

←Older revision		Revision as of 08:15, 27 January 2021
Line 1:		Line 1:

	==The crystal structure of the Lactococcus lactis MG1363 DpsB protein==		==The crystal structure of the Lactococcus lactis MG1363 DpsB protein==
-	<StructureSection load='1zs3' size='340' side='right' caption='[[1zs3]], [[Resolution\|resolution]] 2.70Å' scene=''>	+	<StructureSection load='1zs3' size='340' side='right'caption='[[1zs3]], [[Resolution\|resolution]] 2.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1zs3]] is a 12 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"bacterium_lactis"_lister_1873 "bacterium lactis" lister 1873]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZS3 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1ZS3 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1zs3]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacterium_lactis"_lister_1873 "bacterium lactis" lister 1873]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZS3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZS3 FirstGlance]. <br>
-	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1zuj\|1zuj]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1zuj\|1zuj]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">flpB ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1358 "Bacterium lactis" Lister 1873])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">flpB ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1358 "Bacterium lactis" Lister 1873])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1zs3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zs3 OCA], [~~http~~://pdbe.org/1zs3 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1zs3 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1zs3 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1zs3 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zs3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zs3 OCA], [https://pdbe.org/1zs3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zs3 RCSB], [https://www.ebi.ac.uk/pdbsum/1zs3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zs3 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 12:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zs/1zs3_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zs/1zs3_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 32:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Bacterium lactis lister 1873]]		[[Category: Bacterium lactis lister 1873]]
		+	[[Category: Large Structures]]
	[[Category: Artymiuk, P J]]		[[Category: Artymiuk, P J]]
	[[Category: Bullough, P A]]		[[Category: Bullough, P A]]

OCA at 08:20, 12 October 2017

OCA — Thu, 12 Oct 2017 08:20:16 GMT

←Older revision		Revision as of 08:20, 12 October 2017
Line 1:		Line 1:
		+
	==The crystal structure of the Lactococcus lactis MG1363 DpsB protein==		==The crystal structure of the Lactococcus lactis MG1363 DpsB protein==
	<StructureSection load='1zs3' size='340' side='right' caption='[[1zs3]], [[Resolution\|resolution]] 2.70Å' scene=''>		<StructureSection load='1zs3' size='340' side='right' caption='[[1zs3]], [[Resolution\|resolution]] 2.70Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1zuj\|1zuj]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1zuj\|1zuj]]</td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">flpB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1358 "Bacterium lactis" Lister 1873])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">flpB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1358 "Bacterium lactis" Lister 1873])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zs3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zs3 OCA], [http://pdbe.org/1zs3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1zs3 RCSB], [http://www.ebi.ac.uk/pdbsum/1zs3 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zs3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zs3 OCA], [http://pdbe.org/1zs3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1zs3 RCSB], [http://www.ebi.ac.uk/pdbsum/1zs3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1zs3 ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 20:11, 9 February 2016

OCA — Tue, 09 Feb 2016 20:11:56 GMT

←Older revision		Revision as of 20:11, 9 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1zs3 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 01:38, 11 September 2015

OCA — Fri, 11 Sep 2015 01:38:55 GMT

←Older revision		Revision as of 01:38, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1zs3' size='340' side='right' caption='[[1zs3]], [[Resolution\|resolution]] 2.70Å' scene=''>		<StructureSection load='1zs3' size='340' side='right' caption='[[1zs3]], [[Resolution\|resolution]] 2.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1zs3]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Lactococcus_lactis Lactococcus~~ lactis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZS3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZS3 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1zs3]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacterium_lactis"_lister_1873 "bacterium lactis" lister 1873]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZS3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZS3 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1zuj\|1zuj]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1zuj\|1zuj]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">flpB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1358 ~~Lactococcus~~ lactis])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">flpB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1358 "Bacterium lactis" Lister 1873])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zs3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zs3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1zs3 RCSB], [http://www.ebi.ac.uk/pdbsum/1zs3 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zs3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zs3 OCA], [http://pdbe.org/1zs3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1zs3 RCSB], [http://www.ebi.ac.uk/pdbsum/1zs3 PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1zs3" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Lactococcus~~ lactis]]	+	[[Category: Bacterium lactis lister 1873]]
	[[Category: Artymiuk, P J]]		[[Category: Artymiuk, P J]]
	[[Category: Bullough, P A]]		[[Category: Bullough, P A]]

OCA at 09:06, 8 January 2015

OCA — Thu, 08 Jan 2015 09:06:10 GMT

←Older revision		Revision as of 09:06, 8 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1zs3]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Lactococcus_lactis Lactococcus lactis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZS3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZS3 FirstGlance]. <br>		<table><tr><td colspan='2'>[[1zs3]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Lactococcus_lactis Lactococcus lactis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZS3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZS3 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1zuj\|1zuj]]</td></tr>	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1zuj\|1zuj]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">flpB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1358 Lactococcus lactis])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">flpB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1358 Lactococcus lactis])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zs3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zs3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1zs3 RCSB], [http://www.ebi.ac.uk/pdbsum/1zs3 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zs3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zs3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1zs3 RCSB], [http://www.ebi.ac.uk/pdbsum/1zs3 PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 30:
	</StructureSection>		</StructureSection>
	[[Category: Lactococcus lactis]]		[[Category: Lactococcus lactis]]
-	[[Category: Artymiuk, P J.]]	+	[[Category: Artymiuk, P J]]
-	[[Category: Bullough, P A.]]	+	[[Category: Bullough, P A]]
-	[[Category: Carradus, M.]]	+	[[Category: Carradus, M]]
-	[[Category: Gasson, M J.]]	+	[[Category: Gasson, M J]]
-	[[Category: Green, J.]]	+	[[Category: Green, J]]
-	[[Category: Norte, V A.]]	+	[[Category: Norte, V A]]
-	[[Category: Sedelnikova, S E.]]	+	[[Category: Sedelnikova, S E]]
-	[[Category: Shearman, C A.]]	+	[[Category: Shearman, C A]]
-	[[Category: Stillman, T J.]]	+	[[Category: Stillman, T J]]
-	[[Category: Tzokov, S.]]	+	[[Category: Tzokov, S]]
-	[[Category: Upadhyay, M.]]	+	[[Category: Upadhyay, M]]
-	[[Category: Williams, C H.]]	+	[[Category: Williams, C H]]
	[[Category: Dna binding]]		[[Category: Dna binding]]
	[[Category: Dna binding protein]]		[[Category: Dna binding protein]]

OCA at 23:56, 29 September 2014

OCA — Mon, 29 Sep 2014 23:56:34 GMT

←Older revision		Revision as of 23:56, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1zs3.~~png~~\|~~left~~\|200px]]	+	==The crystal structure of the Lactococcus lactis MG1363 DpsB protein==
		+	<StructureSection load='1zs3' size='340' side='right' caption='[[1zs3]], [[Resolution\|resolution]] 2.70Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1zs3]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Lactococcus_lactis Lactococcus lactis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZS3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZS3 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1zuj\|1zuj]]</td></tr>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">flpB ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1358 Lactococcus lactis])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zs3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zs3 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1zs3 RCSB], [http://www.ebi.ac.uk/pdbsum/1zs3 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zs/1zs3_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Dps proteins play a major role in the protection of bacterial DNA from damage by reactive oxygen species. Previous studies have implicated the extended lysine-containing N-terminal regions of Dps subunits in DNA binding, but this part of the structure has not previously been observed crystallographically. Here the structures of two Dps proteins (DpsA and DpsB) from Lactococcus lactis MG1363 reveal for the first time the presence of an N-terminal alpha helix that extends from the core of the Dps subunit. Consequently, the N-terminal helices are displayed in parallel pairs on the exterior of the dodecameric Dps assemblies. Both DpsA and DpsB bind DNA. Deletion of the DpsA N-terminal helix impaired DNA binding. The N-terminal Lys residues of Escherichia coli Dps have been implicated in DNA binding. Replacement of the lactococcal DpsA Lys residues 9, 15 and 16 by Glu did not inhibit DNA binding. However, DNA binding was inhibited by EDTA, suggesting a role for cations in DNA binding. In contrast to E. coli, Bacillus brevis and Mycobacterium smegmatis Dps:DNA complexes, in which DNA interacts with crystalline Dps phases, L. lactis DNA:Dps complexes appeared as non-crystalline aggregates of protein and DNA in electron micrographs.

-	~~{{STRUCTURE_1zs3\| PDB=1zs3 \| SCENE= }}~~	+	The crystal structures of Lactococcus lactis MG1363 Dps proteins reveal the presence of an N-terminal helix that is required for DNA binding.,Stillman TJ, Upadhyay M, Norte VA, Sedelnikova SE, Carradus M, Tzokov S, Bullough PA, Shearman CA, Gasson MJ, Williams CH, Artymiuk PJ, Green J Mol Microbiol. 2005 Aug;57(4):1101-12. PMID:16091047<ref>PMID:16091047</ref>

-	~~===The crystal structure~~ of the ~~Lactococcus lactis MG1363 DpsB protein===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_16091047}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1zs3]] is a 12 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Lactococcus_lactis Lactococcus lactis]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1ZS3 OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:016091047<~~/~~ref~~><~~ref group="xtra">PMID:010200970</ref><references group="xtra"~~/>	+
	[[Category: Lactococcus lactis]]		[[Category: Lactococcus lactis]]
	[[Category: Artymiuk, P J.]]		[[Category: Artymiuk, P J.]]

OCA at 12:24, 23 January 2013

OCA — Wed, 23 Jan 2013 12:24:31 GMT

←Older revision		Revision as of 12:24, 23 January 2013
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	[[Image:1zs3.png\|left\|200px]]		[[Image:1zs3.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1zs3", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1zs3\| PDB=1zs3 \| SCENE= }}		{{STRUCTURE_1zs3\| PDB=1zs3 \| SCENE= }}

	===The crystal structure of the Lactococcus lactis MG1363 DpsB protein===		===The crystal structure of the Lactococcus lactis MG1363 DpsB protein===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_16091047}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 16091047 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_16091047}}		{{ABSTRACT_PUBMED_16091047}}

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	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~16091047~~</ref><ref group="xtra">PMID:~~10200970~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:016091047</ref><ref group="xtra">PMID:010200970</ref><references group="xtra"/>
	[[Category: Lactococcus lactis]]		[[Category: Lactococcus lactis]]
	[[Category: Artymiuk, P J.]]		[[Category: Artymiuk, P J.]]

OCA: Protected "1zs3" [edit=sysop:move=sysop]

OCA — Mon, 14 Mar 2011 18:11:14 GMT

Protected "1zs3" [edit=sysop:move=sysop]

←Older revision

Revision as of 18:11, 14 March 2011

OCA at 18:11, 14 March 2011

OCA — Mon, 14 Mar 2011 18:11:13 GMT

←Older revision		Revision as of 18:11, 14 March 2011
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-	{{Seed}}
	[[Image:1zs3.png\|left\|200px]]		[[Image:1zs3.png\|left\|200px]]

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	==About this Structure==		==About this Structure==
-	~~1ZS3~~ is a 12 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Lactococcus_lactis Lactococcus lactis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZS3 OCA].	+	[[1zs3]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Lactococcus_lactis Lactococcus lactis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZS3 OCA].

	==Reference==		==Reference==
Line 38:		Line 37:
	[[Category: Williams, C H.]]		[[Category: Williams, C H.]]
	[[Category: Dna binding]]		[[Category: Dna binding]]
		+	[[Category: Dna binding protein]]
	[[Category: Dp]]		[[Category: Dp]]
	[[Category: Lactic acid bacteria]]		[[Category: Lactic acid bacteria]]
	[[Category: Oxidative stress]]		[[Category: Oxidative stress]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 12:25:56 2009''