1zvc - Revision history

OCA at 07:15, 23 August 2023

OCA — Wed, 23 Aug 2023 07:15:31 GMT

←Older revision		Revision as of 07:15, 23 August 2023
Line 3:		Line 3:
	<StructureSection load='1zvc' size='340' side='right'caption='[[1zvc]], [[Resolution\|resolution]] 1.79Å' scene=''>		<StructureSection load='1zvc' size='340' side='right'caption='[[1zvc]], [[Resolution\|resolution]] 1.79Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1zvc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Arath Arath~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZVC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZVC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1zvc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZVC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZVC FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.79Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>~~[[~~Related_structure~~\|~~Related:~~]]~~</b></td><td class="sblockDat"><div style='overflow: auto~~; ~~max-height: 3em;'>[[1z8k\|1z8k]]</div>~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>AT3G25760 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~3702 ARATH])</td~~><~~/tr>~~	+
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks~~'>~~[https://en.wikipedia.org/wiki/Allene-oxide_cyclase Allene-oxide cyclase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.99.6 5.3.99.6]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zvc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zvc OCA], [https://pdbe.org/1zvc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zvc RCSB], [https://www.ebi.ac.uk/pdbsum/1zvc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zvc ProSAT], [https://www.topsan.org/Proteins/CESG/1zvc TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zvc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zvc OCA], [https://pdbe.org/1zvc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zvc RCSB], [https://www.ebi.ac.uk/pdbsum/1zvc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zvc ProSAT], [https://www.topsan.org/Proteins/CESG/1zvc TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/AOC1_ARATH AOC1_ARATH]] Involved in the production of 12-oxo-phytodienoic acid (OPDA), a precursor of jasmonic acid.	+	[https://www.uniprot.org/uniprot/AOC1_ARATH AOC1_ARATH] Involved in the production of 12-oxo-phytodienoic acid (OPDA), a precursor of jasmonic acid.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 24:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Allene-oxide cyclase]]~~	+	[[Category: Arabidopsis thaliana]]
-	~~[[Category: Arath~~]]	+
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Allard~~, S T.M~~]]	+	[[Category: Allard STM]]
-	[[Category: Bingman~~, C A~~]]	+	[[Category: Bingman CA]]
-	[[Category: Bitto, E]]	+	[[Category: Bitto E]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Han BW]]
-	[[Category: Han~~, B W~~]]	+	[[Category: Phillips Jr GN]]
-	[[Category: Phillips~~, G N~~]]	+	[[Category: Wesenberg GE]]
-	[[Category: Wesenberg~~, G E]]~~	+
-	~~[[Category: At3g25760]]~~	+
-	~~[[Category: Cesg]]~~	+
-	~~[[Category: Isomerase]]~~	+
-	~~[[Category: PSI, Protein structure initiative~~]]	+

OCA at 08:17, 27 January 2021

OCA — Wed, 27 Jan 2021 08:17:59 GMT

←Older revision		Revision as of 08:17, 27 January 2021
Line 1:		Line 1:

	==X-ray structure of allene oxide cyclase from arabidopsis thaliana AT3G25760==		==X-ray structure of allene oxide cyclase from arabidopsis thaliana AT3G25760==
-	<StructureSection load='1zvc' size='340' side='right' caption='[[1zvc]], [[Resolution\|resolution]] 1.79Å' scene=''>	+	<StructureSection load='1zvc' size='340' side='right'caption='[[1zvc]], [[Resolution\|resolution]] 1.79Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1zvc]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZVC OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1ZVC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1zvc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZVC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZVC FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1z8k\|1z8k]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1z8k\|1z8k]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AT3G25760 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AT3G25760 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Allene-oxide_cyclase Allene-oxide cyclase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.99.6 5.3.99.6] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Allene-oxide_cyclase Allene-oxide cyclase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.99.6 5.3.99.6] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1zvc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zvc OCA], [~~http~~://pdbe.org/1zvc PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1zvc RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1zvc PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1zvc ProSAT], [~~http~~://www.topsan.org/Proteins/CESG/1zvc TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zvc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zvc OCA], [https://pdbe.org/1zvc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zvc RCSB], [https://www.ebi.ac.uk/pdbsum/1zvc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zvc ProSAT], [https://www.topsan.org/Proteins/CESG/1zvc TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/AOC1_ARATH AOC1_ARATH]] Involved in the production of 12-oxo-phytodienoic acid (OPDA), a precursor of jasmonic acid.	+	[[https://www.uniprot.org/uniprot/AOC1_ARATH AOC1_ARATH]] Involved in the production of 12-oxo-phytodienoic acid (OPDA), a precursor of jasmonic acid.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 26:		Line 26:
	[[Category: Allene-oxide cyclase]]		[[Category: Allene-oxide cyclase]]
	[[Category: Arath]]		[[Category: Arath]]
		+	[[Category: Large Structures]]
	[[Category: Allard, S T.M]]		[[Category: Allard, S T.M]]
	[[Category: Bingman, C A]]		[[Category: Bingman, C A]]

OCA at 18:43, 24 January 2018

OCA — Wed, 24 Jan 2018 18:43:23 GMT

←Older revision		Revision as of 18:43, 24 January 2018
Line 16:		Line 16:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zv/1zvc_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zv/1zvc_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 11:15, 12 October 2017

OCA — Thu, 12 Oct 2017 11:15:25 GMT

←Older revision		Revision as of 11:15, 12 October 2017
Line 1:		Line 1:
		+
	==X-ray structure of allene oxide cyclase from arabidopsis thaliana AT3G25760==		==X-ray structure of allene oxide cyclase from arabidopsis thaliana AT3G25760==
	<StructureSection load='1zvc' size='340' side='right' caption='[[1zvc]], [[Resolution\|resolution]] 1.79Å' scene=''>		<StructureSection load='1zvc' size='340' side='right' caption='[[1zvc]], [[Resolution\|resolution]] 1.79Å' scene=''>
Line 7:		Line 8:
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AT3G25760 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AT3G25760 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Allene-oxide_cyclase Allene-oxide cyclase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.99.6 5.3.99.6] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Allene-oxide_cyclase Allene-oxide cyclase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.99.6 5.3.99.6] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zvc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zvc OCA], [http://pdbe.org/1zvc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1zvc RCSB], [http://www.ebi.ac.uk/pdbsum/1zvc PDBsum], [http://www.topsan.org/Proteins/CESG/1zvc TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zvc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zvc OCA], [http://pdbe.org/1zvc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1zvc RCSB], [http://www.ebi.ac.uk/pdbsum/1zvc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1zvc ProSAT], [http://www.topsan.org/Proteins/CESG/1zvc TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 15:15, 9 February 2016

OCA — Tue, 09 Feb 2016 15:15:17 GMT

←Older revision		Revision as of 15:15, 9 February 2016
Line 19:		Line 19:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1zvc ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 23:29, 10 September 2015

OCA — Thu, 10 Sep 2015 23:29:12 GMT

←Older revision		Revision as of 23:29, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1zvc' size='340' side='right' caption='[[1zvc]], [[Resolution\|resolution]] 1.79Å' scene=''>		<StructureSection load='1zvc' size='340' side='right' caption='[[1zvc]], [[Resolution\|resolution]] 1.79Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1zvc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Arabidopsis_thaliana Arabidopsis thaliana~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZVC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZVC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1zvc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZVC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZVC FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1z8k\|1z8k]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1z8k\|1z8k]]</td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AT3G25760 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ~~Arabidopsis thaliana~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AT3G25760 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 ARATH])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Allene-oxide_cyclase Allene-oxide cyclase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.99.6 5.3.99.6] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Allene-oxide_cyclase Allene-oxide cyclase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.99.6 5.3.99.6] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zvc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zvc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1zvc RCSB], [http://www.ebi.ac.uk/pdbsum/1zvc PDBsum], [http://www.topsan.org/Proteins/CESG/1zvc TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zvc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zvc OCA], [http://pdbe.org/1zvc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1zvc RCSB], [http://www.ebi.ac.uk/pdbsum/1zvc PDBsum], [http://www.topsan.org/Proteins/CESG/1zvc TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 24:		Line 24:
	</StructureSection>		</StructureSection>
	[[Category: Allene-oxide cyclase]]		[[Category: Allene-oxide cyclase]]
-	[[Category: ~~Arabidopsis thaliana~~]]	+	[[Category: Arath]]
	[[Category: Allard, S T.M]]		[[Category: Allard, S T.M]]
	[[Category: Bingman, C A]]		[[Category: Bingman, C A]]

OCA at 07:39, 25 December 2014

OCA — Thu, 25 Dec 2014 07:39:08 GMT

←Older revision		Revision as of 07:39, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1zvc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZVC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZVC FirstGlance]. <br>		<table><tr><td colspan='2'>[[1zvc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZVC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZVC FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1z8k\|1z8k]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1z8k\|1z8k]]</td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AT3G25760 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AT3G25760 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Allene-oxide_cyclase Allene-oxide cyclase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.99.6 5.3.99.6] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Allene-oxide_cyclase Allene-oxide cyclase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.99.6 5.3.99.6] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zvc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zvc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1zvc RCSB], [http://www.ebi.ac.uk/pdbsum/1zvc PDBsum], [http://www.topsan.org/Proteins/CESG/1zvc TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zvc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zvc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1zvc RCSB], [http://www.ebi.ac.uk/pdbsum/1zvc PDBsum], [http://www.topsan.org/Proteins/CESG/1zvc TOPSAN]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/AOC1_ARATH AOC1_ARATH]] Involved in the production of 12-oxo-phytodienoic acid (OPDA), a precursor of jasmonic acid.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 23:		Line 25:
	[[Category: Allene-oxide cyclase]]		[[Category: Allene-oxide cyclase]]
	[[Category: Arabidopsis thaliana]]		[[Category: Arabidopsis thaliana]]
-	[[Category: Allard, S T.M.]]	+	[[Category: Allard, S T.M]]
-	[[Category: Bingman, C A.]]	+	[[Category: Bingman, C A]]
-	[[Category: Bitto, E.]]	+	[[Category: Bitto, E]]
-	[[Category: ~~CESG, Center for Eukaryotic~~ Structural ~~Genomics.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Han, B W.]]	+	[[Category: Han, B W]]
-	[[Category: Phillips, G N.]]	+	[[Category: Phillips, G N]]
-	[[Category: Wesenberg, G E.]]	+	[[Category: Wesenberg, G E]]
	[[Category: At3g25760]]		[[Category: At3g25760]]
-	[[Category: Center for eukaryotic structural genomic]]
	[[Category: Cesg]]		[[Category: Cesg]]
	[[Category: Isomerase]]		[[Category: Isomerase]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi]]~~	+
-	~~[[Category: Structural genomic~~]]	+

OCA at 01:07, 30 September 2014

OCA — Tue, 30 Sep 2014 01:07:11 GMT

←Older revision		Revision as of 01:07, 30 September 2014
Line 1:		Line 1:
-	~~[[Image:1zvc.png\|left\|200px]]~~	+	==X-ray structure of allene oxide cyclase from arabidopsis thaliana AT3G25760==
-		+	<StructureSection load='1zvc' size='340' side='right' caption='[[1zvc]], [[Resolution\|resolution]] 1.79Å' scene=''>
-	~~{{STRUCTURE_1zvc\| PDB=1zvc \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[1zvc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZVC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZVC FirstGlance]. <br>
-	===X-ray structure of allene oxide cyclase from arabidopsis thaliana AT3G25760===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1z8k\|1z8k]]</td></tr>
-		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">AT3G25760 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=3702 Arabidopsis thaliana])</td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Allene-oxide_cyclase Allene-oxide cyclase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.99.6 5.3.99.6] </span></td></tr>
-	[[1zvc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZVC OCA].	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zvc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zvc OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1zvc RCSB], [http://www.ebi.ac.uk/pdbsum/1zvc PDBsum], [http://www.topsan.org/Proteins/CESG/1zvc TOPSAN]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zv/1zvc_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Allene-oxide cyclase]]		[[Category: Allene-oxide cyclase]]
	[[Category: Arabidopsis thaliana]]		[[Category: Arabidopsis thaliana]]

OCA: Protected "1zvc" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 17:27:34 GMT

Protected "1zvc" [edit=sysop:move=sysop]

←Older revision

Revision as of 17:27, 5 January 2013

OCA at 17:27, 5 January 2013

OCA — Sat, 05 Jan 2013 17:27:31 GMT

←Older revision		Revision as of 17:27, 5 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1zvc.png\|left\|200px]]		[[Image:1zvc.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1zvc", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1zvc\| PDB=1zvc \| SCENE= }}		{{STRUCTURE_1zvc\| PDB=1zvc \| SCENE= }}

Line 14:		Line 7:

	==About this Structure==		==About this Structure==
-	~~1ZVC~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZVC OCA].	+	[[1zvc]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZVC OCA].
	[[Category: Allene-oxide cyclase]]		[[Category: Allene-oxide cyclase]]
	[[Category: Arabidopsis thaliana]]		[[Category: Arabidopsis thaliana]]
Line 22:		Line 15:
	[[Category: CESG, Center for Eukaryotic Structural Genomics.]]		[[Category: CESG, Center for Eukaryotic Structural Genomics.]]
	[[Category: Han, B W.]]		[[Category: Han, B W.]]
-	[[Category: ~~Jr.~~, G N~~.Phillips~~.]]	+	[[Category: Phillips, G N.]]
	[[Category: Wesenberg, G E.]]		[[Category: Wesenberg, G E.]]
	[[Category: At3g25760]]		[[Category: At3g25760]]
Line 31:		Line 24:
	[[Category: Psi]]		[[Category: Psi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 10:45:16 2009''