1zwk - Revision history

OCA at 07:15, 23 August 2023

OCA — Wed, 23 Aug 2023 07:15:53 GMT

←Older revision		Revision as of 07:15, 23 August 2023
Line 3:		Line 3:
	<StructureSection load='1zwk' size='340' side='right'caption='[[1zwk]], [[Resolution\|resolution]] 2.60Å' scene=''>		<StructureSection load='1zwk' size='340' side='right'caption='[[1zwk]], [[Resolution\|resolution]] 2.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1zwk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZWK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZWK FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1zwk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZWK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZWK FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.6Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>wrba ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~287~~ "~~Bacillus aeruginosus~~" ~~(Schroeter 1872) Trevisan 1885])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zwk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zwk OCA], [https://pdbe.org/1zwk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zwk RCSB], [https://www.ebi.ac.uk/pdbsum/1zwk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zwk ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1zwk TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zwk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zwk OCA], [https://pdbe.org/1zwk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zwk RCSB], [https://www.ebi.ac.uk/pdbsum/1zwk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zwk ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1zwk TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/NQOR_PSEAE NQOR_PSEAE]] It seems to function in response to environmental stress when various electron transfer chains are affected or when the environment is highly oxidizing. It reduces quinones to the hydroquinone state to prevent interaction of the semiquinone with O2 and production of superoxide (By similarity).	+	[https://www.uniprot.org/uniprot/NQOR_PSEAE NQOR_PSEAE] It seems to function in response to environmental stress when various electron transfer chains are affected or when the environment is highly oxidizing. It reduces quinones to the hydroquinone state to prevent interaction of the semiquinone with O2 and production of superoxide (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Burley, S K~~]]	+	[[Category: Pseudomonas aeruginosa]]
-	[[Category: ~~Gorman, J~~]]	+	[[Category: Burley SK]]
-	[[Category: ~~Structural genomic~~]]	+	[[Category: Gorman J]]
-	[[Category: Shapiro, L]]	+	[[Category: Shapiro L]]
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]~~	+
-	~~[[Category: Protein binding]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Wrba~~]]	+

OCA at 08:19, 27 January 2021

OCA — Wed, 27 Jan 2021 08:19:09 GMT

←Older revision		Revision as of 08:19, 27 January 2021
Line 1:		Line 1:

	==Structure of WrbA from Pseudomonas aeruginosa==		==Structure of WrbA from Pseudomonas aeruginosa==
-	<StructureSection load='1zwk' size='340' side='right' caption='[[1zwk]], [[Resolution\|resolution]] 2.60Å' scene=''>	+	<StructureSection load='1zwk' size='340' side='right'caption='[[1zwk]], [[Resolution\|resolution]] 2.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1zwk]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZWK OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1ZWK FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1zwk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZWK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZWK FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">wrba ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">wrba ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1zwk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zwk OCA], [~~http~~://pdbe.org/1zwk PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1zwk RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1zwk PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1zwk ProSAT], [~~http~~://www.topsan.org/Proteins/NYSGXRC/1zwk TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zwk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zwk OCA], [https://pdbe.org/1zwk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zwk RCSB], [https://www.ebi.ac.uk/pdbsum/1zwk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zwk ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1zwk TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/NQOR_PSEAE NQOR_PSEAE]] It seems to function in response to environmental stress when various electron transfer chains are affected or when the environment is highly oxidizing. It reduces quinones to the hydroquinone state to prevent interaction of the semiquinone with O2 and production of superoxide (By similarity).	+	[[https://www.uniprot.org/uniprot/NQOR_PSEAE NQOR_PSEAE]] It seems to function in response to environmental stress when various electron transfer chains are affected or when the environment is highly oxidizing. It reduces quinones to the hydroquinone state to prevent interaction of the semiquinone with O2 and production of superoxide (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Burley, S K]]		[[Category: Burley, S K]]
	[[Category: Gorman, J]]		[[Category: Gorman, J]]

OCA at 08:44, 2 May 2018

OCA — Wed, 02 May 2018 08:44:56 GMT

←Older revision		Revision as of 08:44, 2 May 2018
Line 1:		Line 1:
		+
	==Structure of WrbA from Pseudomonas aeruginosa==		==Structure of WrbA from Pseudomonas aeruginosa==
	<StructureSection load='1zwk' size='340' side='right' caption='[[1zwk]], [[Resolution\|resolution]] 2.60Å' scene=''>		<StructureSection load='1zwk' size='340' side='right' caption='[[1zwk]], [[Resolution\|resolution]] 2.60Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">wrba ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">wrba ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zwk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zwk OCA], [http://pdbe.org/1zwk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1zwk RCSB], [http://www.ebi.ac.uk/pdbsum/1zwk PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1zwk TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zwk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zwk OCA], [http://pdbe.org/1zwk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1zwk RCSB], [http://www.ebi.ac.uk/pdbsum/1zwk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1zwk ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/1zwk TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zw/1zwk_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zw/1zwk_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1zwk ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 14:15, 11 September 2015

OCA — Fri, 11 Sep 2015 14:15:33 GMT

←Older revision		Revision as of 14:15, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='1zwk' size='340' side='right' caption='[[1zwk]], [[Resolution\|resolution]] 2.60Å' scene=''>		<StructureSection load='1zwk' size='340' side='right' caption='[[1zwk]], [[Resolution\|resolution]] 2.60Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1zwk]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Pseudomonas_aeruginosa Pseudomonas aeruginosa~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZWK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZWK FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1zwk]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZWK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZWK FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">wrba ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 ~~Pseudomonas aeruginosa~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">wrba ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zwk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zwk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1zwk RCSB], [http://www.ebi.ac.uk/pdbsum/1zwk PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1zwk TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zwk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zwk OCA], [http://pdbe.org/1zwk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1zwk RCSB], [http://www.ebi.ac.uk/pdbsum/1zwk PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1zwk TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[http://www.uniprot.org/uniprot/~~Q9I509_PSEAE Q9I509_PSEAE~~]] It seems to function in response to environmental stress when various electron transfer chains are affected or when the environment is highly oxidizing. It reduces quinones to the hydroquinone state to prevent interaction of the semiquinone with O2 and production of superoxide (By similarity).~~[HAMAP-Rule:MF_01017]~~	+	[[http://www.uniprot.org/uniprot/NQOR_PSEAE NQOR_PSEAE]] It seems to function in response to environmental stress when various electron transfer chains are affected or when the environment is highly oxidizing. It reduces quinones to the hydroquinone state to prevent interaction of the semiquinone with O2 and production of superoxide (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1zwk" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Pseudomonas aeruginosa]]
	[[Category: Burley, S K]]		[[Category: Burley, S K]]
	[[Category: Gorman, J]]		[[Category: Gorman, J]]

OCA at 17:34, 25 December 2014

OCA — Thu, 25 Dec 2014 17:34:48 GMT

←Older revision		Revision as of 17:34, 25 December 2014
Line 7:		Line 7:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zwk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zwk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1zwk RCSB], [http://www.ebi.ac.uk/pdbsum/1zwk PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1zwk TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zwk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zwk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1zwk RCSB], [http://www.ebi.ac.uk/pdbsum/1zwk PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1zwk TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/Q9I509_PSEAE Q9I509_PSEAE]] It seems to function in response to environmental stress when various electron transfer chains are affected or when the environment is highly oxidizing. It reduces quinones to the hydroquinone state to prevent interaction of the semiquinone with O2 and production of superoxide (By similarity).[HAMAP-Rule:MF_01017]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 13:09, 6 November 2014

OCA — Thu, 06 Nov 2014 13:09:36 GMT

←Older revision		Revision as of 13:09, 6 November 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1zwk]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZWK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZWK FirstGlance]. <br>		<table><tr><td colspan='2'>[[1zwk]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZWK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZWK FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">wrba ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 Pseudomonas aeruginosa])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">wrba ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 Pseudomonas aeruginosa])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zwk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zwk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1zwk RCSB], [http://www.ebi.ac.uk/pdbsum/1zwk PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1zwk TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zwk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zwk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1zwk RCSB], [http://www.ebi.ac.uk/pdbsum/1zwk PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1zwk TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 30:
	</StructureSection>		</StructureSection>
	[[Category: Pseudomonas aeruginosa]]		[[Category: Pseudomonas aeruginosa]]
-	[[Category: Burley, S K.]]	+	[[Category: Burley, S K]]
-	[[Category: Gorman, J~~.]]~~	+	[[Category: Gorman, J]]
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]~~	+
-	~~[[Category: Shapiro, L.]]~~	+
-	~~[[Category: New york sgx research center for structural genomic]]~~	+
-	~~[[Category: Nysgxrc]]~~	+
-	~~[[Category: Protein binding]]~~	+
-	~~[[Category: Protein structure initiative]]~~	+
-	~~[[Category: Psi~~]]	+
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
		+	[[Category: Shapiro, L]]
		+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
		+	[[Category: Protein binding]]
		+	[[Category: PSI, Protein structure initiative]]
	[[Category: Wrba]]		[[Category: Wrba]]

OCA at 00:40, 30 September 2014

OCA — Tue, 30 Sep 2014 00:40:00 GMT

←Older revision		Revision as of 00:40, 30 September 2014
Line 1:		Line 1:
-	[[~~Image:~~1zwk.~~png~~\|~~left~~\|200px]]	+	==Structure of WrbA from Pseudomonas aeruginosa==
		+	<StructureSection load='1zwk' size='340' side='right' caption='[[1zwk]], [[Resolution\|resolution]] 2.60Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1zwk]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZWK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZWK FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">wrba ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 Pseudomonas aeruginosa])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zwk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zwk OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1zwk RCSB], [http://www.ebi.ac.uk/pdbsum/1zwk PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/1zwk TOPSAN]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zw/1zwk_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The tryptophan repressor binding protein WrbA binds to the tryptophan repressor protein TrpR. Although the biological role of WrbA remains unclear, it has been proposed to function in enhancing the stability of TrpR-DNA complexes. Sequence database analysis has identified WrbA as a founding member of a flavodoxin-like family of proteins. Here we present crystal structures of WrbA from Deinococcus radiodurans and Pseudomonas aeruginosa and their complexes with flavin mononucleotide. The protomer structure is similar to that of previously determined long-chain flavodoxins; however, each contains a conserved inserted region unique to the WrbA family. Interestingly, each WrbA protein forms a homotetramer with 222 symmetry, unique among flavodoxin-like proteins, in which each protomer binds one flavin mononucleotide cofactor molecule.

-	~~{{STRUCTURE_1zwk\| PDB=1zwk \| SCENE= }}~~	+	Crystal structures of the tryptophan repressor binding protein WrbA and complexes with flavin mononucleotide.,Gorman J, Shapiro L Protein Sci. 2005 Dec;14(12):3004-12. PMID:16322580<ref>PMID:16322580</ref>

-	~~===Structure~~ of ~~WrbA from Pseudomonas aeruginosa===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_16322580}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1zwk]] is a 2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1ZWK OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:016322580<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Pseudomonas aeruginosa]]		[[Category: Pseudomonas aeruginosa]]
	[[Category: Burley, S K.]]		[[Category: Burley, S K.]]

OCA: Protected "1zwk" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 16:58:52 GMT

Protected "1zwk" [edit=sysop:move=sysop]

←Older revision

Revision as of 16:58, 5 January 2013

OCA at 16:58, 5 January 2013

OCA — Sat, 05 Jan 2013 16:58:48 GMT

←Older revision		Revision as of 16:58, 5 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1zwk.png\|left\|200px]]		[[Image:1zwk.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1zwk", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1zwk\| PDB=1zwk \| SCENE= }}		{{STRUCTURE_1zwk\| PDB=1zwk \| SCENE= }}

	===Structure of WrbA from Pseudomonas aeruginosa===		===Structure of WrbA from Pseudomonas aeruginosa===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_16322580}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 16322580 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_16322580}}		{{ABSTRACT_PUBMED_16322580}}

	==About this Structure==		==About this Structure==
-	~~1ZWK~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZWK OCA].	+	[[1zwk]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZWK OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~16322580~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:016322580</ref><references group="xtra"/>
	[[Category: Pseudomonas aeruginosa]]		[[Category: Pseudomonas aeruginosa]]
	[[Category: Burley, S K.]]		[[Category: Burley, S K.]]
	[[Category: Gorman, J.]]		[[Category: Gorman, J.]]
-	[[Category: NYSGXRC, New York ~~Structural GenomiX~~ Research ~~Consortium~~.]]	+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics.]]
	[[Category: Shapiro, L.]]		[[Category: Shapiro, L.]]
-	[[Category: New york ~~structural genomix~~ research ~~consortium~~]]	+	[[Category: New york sgx research center for structural genomic]]
	[[Category: Nysgxrc]]		[[Category: Nysgxrc]]
		+	[[Category: Protein binding]]
	[[Category: Protein structure initiative]]		[[Category: Protein structure initiative]]
	[[Category: Psi]]		[[Category: Psi]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Wrba]]		[[Category: Wrba]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 00:21:39 2009''

OCA at 22:21, 17 February 2009

OCA — Tue, 17 Feb 2009 22:21:41 GMT

←Older revision		Revision as of 22:21, 17 February 2009
Line 23:		Line 23:

	==Reference==		==Reference==
-	~~Crystal structures of the tryptophan repressor binding protein WrbA and complexes with flavin mononucleotide., Gorman J, Shapiro L, Protein Sci. 2005 Dec;14(12):3004-12.~~ PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/16322580 16322580]~~	+	<ref group="xtra">PMID:16322580</ref><references group="xtra"/>
	[[Category: Pseudomonas aeruginosa]]		[[Category: Pseudomonas aeruginosa]]
	[[Category: Burley, S K.]]		[[Category: Burley, S K.]]
Line 36:		Line 36:
	[[Category: Wrba]]		[[Category: Wrba]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Sun Nov 16 15~~:49:~~52 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 00:21:39 2009''