1zxj - Revision history

OCA at 09:07, 14 February 2024

OCA — Wed, 14 Feb 2024 09:07:19 GMT

←Older revision		Revision as of 09:07, 14 February 2024
Line 3:		Line 3:
	<StructureSection load='1zxj' size='340' side='right'caption='[[1zxj]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='1zxj' size='340' side='right'caption='[[1zxj]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1zxj]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"filterable_agent_of_primary_atypical_pneumonia"_eaton_et_al._1944 "filterable agent of primary atypical pneumonia" eaton et al. 1944~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZXJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZXJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1zxj]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycoplasma_pneumoniae Mycoplasma pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZXJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZXJ FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zxj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zxj OCA], [https://pdbe.org/1zxj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zxj RCSB], [https://www.ebi.ac.uk/pdbsum/1zxj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zxj ProSAT], [https://www.topsan.org/Proteins/BSGC/1zxj TOPSAN]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.8Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zxj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zxj OCA], [https://pdbe.org/1zxj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zxj RCSB], [https://www.ebi.ac.uk/pdbsum/1zxj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zxj ProSAT], [https://www.topsan.org/Proteins/BSGC/1zxj TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Y555_MYCPN Y555_MYCPN]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 16:		Line 19:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1zxj ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1zxj ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	The crystal structure of the hypothetical protein MPN555 from Mycoplasma pneumoniae (gi\|1673958) has been determined to a resolution of 2.8 Angstrom using anomalous diffraction data at the Se-peak wavelength. Structure determination revealed a mostly alpha-helical protein with a three-lobed shape. The three lobes or fingers delineate a central binding groove and additional grooves between lobes 1 and 3 and between lobes 2 and 3. For one of the molecules in the asymmetric unit, the central binding pocket was filled with a peptide from the uncleaved N-terminal affinity tag. The MPN555 structure has structural homology to two bacterial chaperone proteins: SurA and trigger factor from Escherichia coli. The structural data and the homology to other chaperone proteins suggests an involvement in protein folding as a molecular chaperone for MPN555.
-
-	Structure of the hypothetical Mycoplasma protein MPN555 suggests a chaperone function.,Schulze-Gahmen U, Aono S, Chen S, Yokota H, Kim R, Kim SH Acta Crystallogr D Biol Crystallogr. 2005 Oct;61(Pt 10):1343-7. Epub 2005, Sep 28. PMID:16204885<ref>PMID:16204885</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 1zxj" style="background-color:#fffaf0;"></div>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Filterable agent of primary atypical pneumonia eaton et al. 1944]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Aono, S~~]]	+	[[Category: Mycoplasma pneumoniae]]
-	[[Category: ~~Structural genomic~~]]	+	[[Category: Aono S]]
-	[[Category: Kim, R]]	+	[[Category: Kim R]]
-	[[Category: Kim, S H]]	+	[[Category: Kim S-H]]
-	[[Category: Schulze-Gahmen, U]]	+	[[Category: Schulze-Gahmen U]]
-	[[Category: Shengfeng, C]]	+	[[Category: Shengfeng C]]
-	[[Category: Yokota, H]]	+	[[Category: Yokota H]]
-	~~[[Category: Bsgc]]~~	+
-	~~[[Category: Mostly alpha helical protein]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Tri-lobal structure]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 09:37, 5 May 2021

OCA — Wed, 05 May 2021 09:37:26 GMT

←Older revision		Revision as of 09:37, 5 May 2021
Line 3:		Line 3:
	<StructureSection load='1zxj' size='340' side='right'caption='[[1zxj]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='1zxj' size='340' side='right'caption='[[1zxj]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1zxj]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"filterable_agent_of_primary_atypical_pneumonia"_eaton_et_al._1944 "filterable agent of primary atypical pneumonia" eaton et al. 1944]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZXJ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1ZXJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1zxj]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/"filterable_agent_of_primary_atypical_pneumonia"_eaton_et_al._1944 "filterable agent of primary atypical pneumonia" eaton et al. 1944]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZXJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ZXJ FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=1zxj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zxj OCA], [~~http~~://pdbe.org/1zxj PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=1zxj RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/1zxj PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=1zxj ProSAT], [~~http~~://www.topsan.org/Proteins/BSGC/1zxj TOPSAN]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1zxj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zxj OCA], [https://pdbe.org/1zxj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1zxj RCSB], [https://www.ebi.ac.uk/pdbsum/1zxj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1zxj ProSAT], [https://www.topsan.org/Proteins/BSGC/1zxj TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 09:17, 24 July 2019

OCA — Wed, 24 Jul 2019 09:17:28 GMT

←Older revision		Revision as of 09:17, 24 July 2019
Line 1:		Line 1:

	==Crystal structure of the hypthetical Mycoplasma protein, MPN555==		==Crystal structure of the hypthetical Mycoplasma protein, MPN555==
-	<StructureSection load='1zxj' size='340' side='right' caption='[[1zxj]], [[Resolution\|resolution]] 2.80Å' scene=''>	+	<StructureSection load='1zxj' size='340' side='right'caption='[[1zxj]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1zxj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"filterable_agent_of_primary_atypical_pneumonia"_eaton_et_al._1944 "filterable agent of primary atypical pneumonia" eaton et al. 1944]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZXJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZXJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1zxj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"filterable_agent_of_primary_atypical_pneumonia"_eaton_et_al._1944 "filterable agent of primary atypical pneumonia" eaton et al. 1944]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZXJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZXJ FirstGlance]. <br>
Line 10:		Line 10:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zx/1zxj_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zx/1zxj_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 30:		Line 30:
	</StructureSection>		</StructureSection>
	[[Category: Filterable agent of primary atypical pneumonia eaton et al. 1944]]		[[Category: Filterable agent of primary atypical pneumonia eaton et al. 1944]]
		+	[[Category: Large Structures]]
	[[Category: Aono, S]]		[[Category: Aono, S]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

OCA at 15:45, 12 October 2017

OCA — Thu, 12 Oct 2017 15:45:52 GMT

←Older revision		Revision as of 15:45, 12 October 2017
Line 1:		Line 1:
		+
	==Crystal structure of the hypthetical Mycoplasma protein, MPN555==		==Crystal structure of the hypthetical Mycoplasma protein, MPN555==
	<StructureSection load='1zxj' size='340' side='right' caption='[[1zxj]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='1zxj' size='340' side='right' caption='[[1zxj]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1zxj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"filterable_agent_of_primary_atypical_pneumonia"_eaton_et_al._1944 "filterable agent of primary atypical pneumonia" eaton et al. 1944]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZXJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZXJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1zxj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"filterable_agent_of_primary_atypical_pneumonia"_eaton_et_al._1944 "filterable agent of primary atypical pneumonia" eaton et al. 1944]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZXJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZXJ FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zxj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zxj OCA], [http://pdbe.org/1zxj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1zxj RCSB], [http://www.ebi.ac.uk/pdbsum/1zxj PDBsum], [http://www.topsan.org/Proteins/BSGC/1zxj TOPSAN]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zxj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zxj OCA], [http://pdbe.org/1zxj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1zxj RCSB], [http://www.ebi.ac.uk/pdbsum/1zxj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1zxj ProSAT], [http://www.topsan.org/Proteins/BSGC/1zxj TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 11:37, 9 February 2016

OCA — Tue, 09 Feb 2016 11:37:55 GMT

←Older revision		Revision as of 11:37, 9 February 2016
Line 13:		Line 13:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1zxj ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 21:50, 10 September 2015

OCA — Thu, 10 Sep 2015 21:50:15 GMT

←Older revision		Revision as of 21:50, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='1zxj' size='340' side='right' caption='[[1zxj]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='1zxj' size='340' side='right' caption='[[1zxj]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[1zxj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Mycoplasma_pneumoniae Mycoplasma pneumoniae~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZXJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZXJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[1zxj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"filterable_agent_of_primary_atypical_pneumonia"_eaton_et_al._1944 "filterable agent of primary atypical pneumonia" eaton et al. 1944]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZXJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZXJ FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zxj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zxj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1zxj RCSB], [http://www.ebi.ac.uk/pdbsum/1zxj PDBsum], [http://www.topsan.org/Proteins/BSGC/1zxj TOPSAN]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zxj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zxj OCA], [http://pdbe.org/1zxj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1zxj RCSB], [http://www.ebi.ac.uk/pdbsum/1zxj PDBsum], [http://www.topsan.org/Proteins/BSGC/1zxj TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 23:		Line 23:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 1zxj" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Mycoplasma pneumoniae~~]]	+	[[Category: Filterable agent of primary atypical pneumonia eaton et al. 1944]]
	[[Category: Aono, S]]		[[Category: Aono, S]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]

OCA at 06:32, 25 December 2014

OCA — Thu, 25 Dec 2014 06:32:57 GMT

←Older revision		Revision as of 06:32, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[1zxj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycoplasma_pneumoniae Mycoplasma pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZXJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZXJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[1zxj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycoplasma_pneumoniae Mycoplasma pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZXJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZXJ FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zxj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zxj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1zxj RCSB], [http://www.ebi.ac.uk/pdbsum/1zxj PDBsum], [http://www.topsan.org/Proteins/BSGC/1zxj TOPSAN]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zxj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zxj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1zxj RCSB], [http://www.ebi.ac.uk/pdbsum/1zxj PDBsum], [http://www.topsan.org/Proteins/BSGC/1zxj TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 28:		Line 28:
	</StructureSection>		</StructureSection>
	[[Category: Mycoplasma pneumoniae]]		[[Category: Mycoplasma pneumoniae]]
-	[[Category: Aono, S.]]	+	[[Category: Aono, S]]
-	[[Category: ~~BSGC, Berkeley~~ Structural ~~Genomics Center.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Kim, R.]]	+	[[Category: Kim, R]]
-	[[Category: Kim, S H.]]	+	[[Category: Kim, S H]]
-	[[Category: Schulze-Gahmen, U.]]	+	[[Category: Schulze-Gahmen, U]]
-	[[Category: Shengfeng, C.]]	+	[[Category: Shengfeng, C]]
-	[[Category: Yokota, H~~.]]~~	+	[[Category: Yokota, H]]
-	~~[[Category: Berkeley structural genomics center~~]]	+
	[[Category: Bsgc]]		[[Category: Bsgc]]
	[[Category: Mostly alpha helical protein]]		[[Category: Mostly alpha helical protein]]
-	[[Category: Protein structure initiative]]	+	[[Category: PSI, Protein structure initiative]]
-	~~[[Category: Psi]]~~	+
-	~~[[Category: Structural genomic~~]]	+
	[[Category: Tri-lobal structure]]		[[Category: Tri-lobal structure]]
	[[Category: Unknown function]]		[[Category: Unknown function]]

OCA at 02:42, 30 September 2014

OCA — Tue, 30 Sep 2014 02:42:17 GMT

←Older revision		Revision as of 02:42, 30 September 2014
Line 1:		Line 1:
-	[[~~Image~~:1zxj.~~png\|left~~\|200px]]	+	==Crystal structure of the hypthetical Mycoplasma protein, MPN555==
		+	<StructureSection load='1zxj' size='340' side='right' caption='[[1zxj]], [[Resolution\|resolution]] 2.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[1zxj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycoplasma_pneumoniae Mycoplasma pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZXJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ZXJ FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1zxj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1zxj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1zxj RCSB], [http://www.ebi.ac.uk/pdbsum/1zxj PDBsum], [http://www.topsan.org/Proteins/BSGC/1zxj TOPSAN]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zx/1zxj_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The crystal structure of the hypothetical protein MPN555 from Mycoplasma pneumoniae (gi\|1673958) has been determined to a resolution of 2.8 Angstrom using anomalous diffraction data at the Se-peak wavelength. Structure determination revealed a mostly alpha-helical protein with a three-lobed shape. The three lobes or fingers delineate a central binding groove and additional grooves between lobes 1 and 3 and between lobes 2 and 3. For one of the molecules in the asymmetric unit, the central binding pocket was filled with a peptide from the uncleaved N-terminal affinity tag. The MPN555 structure has structural homology to two bacterial chaperone proteins: SurA and trigger factor from Escherichia coli. The structural data and the homology to other chaperone proteins suggests an involvement in protein folding as a molecular chaperone for MPN555.

-	~~{{STRUCTURE_1zxj\| PDB=1zxj \| SCENE= }}~~	+	Structure of the hypothetical Mycoplasma protein MPN555 suggests a chaperone function.,Schulze-Gahmen U, Aono S, Chen S, Yokota H, Kim R, Kim SH Acta Crystallogr D Biol Crystallogr. 2005 Oct;61(Pt 10):1343-7. Epub 2005, Sep 28. PMID:16204885<ref>PMID:16204885</ref>

-	~~===Crystal structure~~ of the ~~hypthetical Mycoplasma protein, MPN555===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_16204885}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[1zxj]] is a 4 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Mycoplasma_pneumoniae Mycoplasma pneumoniae]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=1ZXJ OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:016204885<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Mycoplasma pneumoniae]]		[[Category: Mycoplasma pneumoniae]]
	[[Category: Aono, S.]]		[[Category: Aono, S.]]

OCA: Protected "1zxj" [edit=sysop:move=sysop]

OCA — Sat, 05 Jan 2013 17:24:29 GMT

Protected "1zxj" [edit=sysop:move=sysop]

←Older revision

Revision as of 17:24, 5 January 2013

OCA at 17:24, 5 January 2013

OCA — Sat, 05 Jan 2013 17:24:27 GMT

←Older revision		Revision as of 17:24, 5 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:1zxj.png\|left\|200px]]		[[Image:1zxj.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_1zxj", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_1zxj\| PDB=1zxj \| SCENE= }}		{{STRUCTURE_1zxj\| PDB=1zxj \| SCENE= }}

	===Crystal structure of the hypthetical Mycoplasma protein, MPN555===		===Crystal structure of the hypthetical Mycoplasma protein, MPN555===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_16204885}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 16204885 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_16204885}}		{{ABSTRACT_PUBMED_16204885}}

	==About this Structure==		==About this Structure==
-	~~1ZXJ~~ is a 4 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Mycoplasma_pneumoniae Mycoplasma pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZXJ OCA].	+	[[1zxj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Mycoplasma_pneumoniae Mycoplasma pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ZXJ OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~16204885~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:016204885</ref><references group="xtra"/>
	[[Category: Mycoplasma pneumoniae]]		[[Category: Mycoplasma pneumoniae]]
	[[Category: Aono, S.]]		[[Category: Aono, S.]]
Line 39:		Line 27:
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Tri-lobal structure]]		[[Category: Tri-lobal structure]]
-		+	[[Category: Unknown function]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Tue Feb 17 09:28:29 2009''~~	+