2a4i - Revision history

OCA at 14:36, 17 November 2021

OCA — Wed, 17 Nov 2021 14:36:11 GMT

←Older revision		Revision as of 14:36, 17 November 2021
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	<StructureSection load='2a4i' size='340' side='right'caption='[[2a4i]]' scene=''>		<StructureSection load='2a4i' size='340' side='right'caption='[[2a4i]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2A4I FirstGlance]. <br>	+	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2A4I FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2a4i FirstGlance], [~~http~~://www.ebi.ac.uk/pdbsum/2a4i PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2a4i ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2a4i FirstGlance], [https://www.ebi.ac.uk/pdbsum/2a4i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2a4i ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 05:13, 13 February 2020

OCA — Thu, 13 Feb 2020 05:13:25 GMT

←Older revision		Revision as of 05:13, 13 February 2020
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	==HOMOLOGY MODEL OF VIMELYSIN==		==HOMOLOGY MODEL OF VIMELYSIN==
-	<StructureSection load='2a4i' size='340' side='right' caption='[[2a4i]]' scene=''>	+	<StructureSection load='2a4i' size='340' side='right'caption='[[2a4i]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2A4I FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2A4I FirstGlance]. <br>
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	</StructureSection>		</StructureSection>
	[[Category: Theoretical Model]]		[[Category: Theoretical Model]]
		+	[[Category: Large Structures]]
	[[Category: Harada, S]]		[[Category: Harada, S]]
	[[Category: Hiraga, K]]		[[Category: Hiraga, K]]

OCA at 07:03, 9 May 2018

OCA — Wed, 09 May 2018 07:03:40 GMT

←Older revision		Revision as of 07:03, 9 May 2018
Line 5:		Line 5:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2A4I FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2A4I FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a4i FirstGlance], [http://www.ebi.ac.uk/pdbsum/2a4i PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a4i FirstGlance], [http://www.ebi.ac.uk/pdbsum/2a4i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2a4i ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 10:17, 11 February 2016

OCA — Thu, 11 Feb 2016 10:17:16 GMT

←Older revision		Revision as of 10:17, 11 February 2016
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		+	{{Theoretical_model}}
		+
	==HOMOLOGY MODEL OF VIMELYSIN==		==HOMOLOGY MODEL OF VIMELYSIN==
	<StructureSection load='2a4i' size='340' side='right' caption='[[2a4i]]' scene=''>		<StructureSection load='2a4i' size='340' side='right' caption='[[2a4i]]' scene=''>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Theoretical Model]]
	[[Category: Harada, S]]		[[Category: Harada, S]]
	[[Category: Hiraga, K]]		[[Category: Hiraga, K]]

OCA at 08:31, 11 September 2015

OCA — Fri, 11 Sep 2015 08:31:02 GMT

←Older revision		Revision as of 08:31, 11 September 2015
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	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2a4i" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 10:17, 8 January 2015

OCA — Thu, 08 Jan 2015 10:17:21 GMT

←Older revision		Revision as of 10:17, 8 January 2015
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2A4I FirstGlance]. <br>		<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2A4I FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a4i FirstGlance], [http://www.ebi.ac.uk/pdbsum/2a4i PDBsum]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a4i FirstGlance], [http://www.ebi.ac.uk/pdbsum/2a4i PDBsum]</span></td></tr>
-	<table>	+	</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==

OCA at 05:10, 29 September 2014

OCA — Mon, 29 Sep 2014 05:10:19 GMT

←Older revision		Revision as of 05:10, 29 September 2014
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-	~~{{Theoretical_model}}~~	+	==HOMOLOGY MODEL OF VIMELYSIN==
		+	<StructureSection load='2a4i' size='340' side='right' caption='[[2a4i]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2A4I FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a4i FirstGlance], [http://www.ebi.ac.uk/pdbsum/2a4i PDBsum]</span></td></tr>
		+	<table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Vimelysin is a metalloproteinase with high activity at low temperature and an unusual resistance to organic solvents. Substrate specificities of vimelysin and thermolysin were examined using FRETS-libraries, revealing a significant difference at the P3' position: vimelysin preferred acidic amino acid residues, whereas thermolysin preferred basic residues. Homology modeling of vimelysin suggests that oppositely charged residues in the S3' subsites (R215 in vimelysin and D213 in thermolysin) may be responsible for this specificity difference. This hypothesis was confirmed by examining the R215D mutant of vimelysin, which showed a substrate specificity profile intermediate between thermolysin and vimelysin.

-	~~[[Image~~:~~2a4i~~.~~png\|left\|200px]]~~	+	Exploring the subsite-structure of vimelysin and thermolysin using FRETS-libraries.,Oda K, Takahashi T, Takada K, Tsunemi M, Ng KK, Hiraga K, Harada S FEBS Lett. 2005 Sep 12;579(22):5013-8. PMID:16139276<ref>PMID:16139276</ref>

-	~~{{STRUCTURE_2a4i\| PDB=2a4i \| SCENE= }}~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	==~~=HOMOLOGY MODEL OF VIMELYSIN===~~	+	== References ==
-		+	<references/>
-	~~{{ABSTRACT_PUBMED_16139276}}~~	+	__TOC__
-		+	</StructureSection>
-	~~==Reference~~==	+
-	<~~ref group="xtra">PMID:016139276<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Harada, S]]		[[Category: Harada, S]]
	[[Category: Hiraga, K]]		[[Category: Hiraga, K]]

OCA: Protected "2a4i" [edit=sysop:move=sysop]

OCA — Sun, 21 Oct 2012 09:42:33 GMT

Protected "2a4i" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:42, 21 October 2012

OCA at 09:42, 21 October 2012

OCA — Sun, 21 Oct 2012 09:42:28 GMT

←Older revision		Revision as of 09:42, 21 October 2012
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	{{Theoretical_model}}		{{Theoretical_model}}
-	~~{{Seed}}~~	+
	[[Image:2a4i.png\|left\|200px]]		[[Image:2a4i.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2a4i", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2a4i\| PDB=2a4i \| SCENE= }}		{{STRUCTURE_2a4i\| PDB=2a4i \| SCENE= }}

	===HOMOLOGY MODEL OF VIMELYSIN===		===HOMOLOGY MODEL OF VIMELYSIN===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_16139276}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 16139276 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_16139276}}		{{ABSTRACT_PUBMED_16139276}}
-
-	==About this Structure==
-	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A4I OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~16139276~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:016139276</ref><references group="xtra"/>
	[[Category: Harada, S]]		[[Category: Harada, S]]
	[[Category: Hiraga, K]]		[[Category: Hiraga, K]]
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	[[Category: Takahashi, T]]		[[Category: Takahashi, T]]
	[[Category: Tsunemi, M]]		[[Category: Tsunemi, M]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 08:49:51 2010''

OCA at 05:49, 8 April 2010

OCA — Thu, 08 Apr 2010 05:49:52 GMT

←Older revision		Revision as of 05:49, 8 April 2010
Line 1:		Line 1:
-	~~'''Theoretical Model'''~~	+	{{Theoretical_model}}
		+	{{Seed}}
		+	[[Image:2a4i.png\|left\|200px]]

-	The ~~entry 2A4I~~ is ~~a Theoretical Model titled 'Homology model of Vimelysin'~~.	+	<!--
		+	The line below this paragraph, containing "STRUCTURE_2a4i", creates the "Structure Box" on the page.
		+	You may change the PDB parameter (which sets the PDB file loaded into the applet)
		+	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
		+	or leave the SCENE parameter empty for the default display.
		+	-->
		+	{{STRUCTURE_2a4i\| PDB=2a4i \| SCENE= }}

-	~~[[Category:Theoretical Model]]~~	+	===HOMOLOGY MODEL OF VIMELYSIN===


-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Wed Jul 30 09~~:55:~~18 2008~~''	+	<!--
		+	The line below this paragraph, {{ABSTRACT_PUBMED_16139276}}, adds the Publication Abstract to the page
		+	(as it appears on PubMed at http://www.pubmed.gov), where 16139276 is the PubMed ID number.
		+	-->
		+	{{ABSTRACT_PUBMED_16139276}}
		+
		+	==About this Structure==
		+	Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A4I OCA].
		+
		+	==Reference==
		+	<ref group="xtra">PMID:16139276</ref><references group="xtra"/>
		+	[[Category: Harada, S]]
		+	[[Category: Hiraga, K]]
		+	[[Category: Ng, K K]]
		+	[[Category: Oda, K]]
		+	[[Category: Takada, K]]
		+	[[Category: Takahashi, T]]
		+	[[Category: Tsunemi, M]]
		+
		+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Apr 8 08:49:51 2010''