2a8f - Revision history

OCA at 07:20, 23 August 2023

OCA — Wed, 23 Aug 2023 07:20:36 GMT

←Older revision		Revision as of 07:20, 23 August 2023
Line 3:		Line 3:
	<StructureSection load='2a8f' size='340' side='right'caption='[[2a8f]], [[Resolution\|resolution]] 1.35Å' scene=''>		<StructureSection load='2a8f' size='340' side='right'caption='[[2a8f]], [[Resolution\|resolution]] 1.35Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2a8f]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Cinnamon_fungus Cinnamon fungus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A8F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2A8F FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2a8f]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Phytophthora_cinnamomi Phytophthora cinnamomi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A8F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2A8F FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~CIN1B (~~[~~https://www~~.~~ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info~~&~~srchmode=5&id=4785 Cinnamon fungus])~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.35Å</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2a8f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a8f OCA], [https://pdbe.org/2a8f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2a8f RCSB], [https://www.ebi.ac.uk/pdbsum/2a8f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2a8f ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2a8f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a8f OCA], [https://pdbe.org/2a8f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2a8f RCSB], [https://www.ebi.ac.uk/pdbsum/2a8f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2a8f ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/ELIB_PHYCI ELIB_PHYCI]] Induces local and distal defense responses (incompatible hypersensitive reaction) in plants from the solanaceae and cruciferae families. Elicits leaf necrosis and causes the accumulation of pathogenesis-related proteins. Might interact with the lipidic molecules of the plasma membrane. Elicitins are able to load, carry, and transfer sterols between membranes.	+	[https://www.uniprot.org/uniprot/ELIB_PHYCI ELIB_PHYCI] Induces local and distal defense responses (incompatible hypersensitive reaction) in plants from the solanaceae and cruciferae families. Elicits leaf necrosis and causes the accumulation of pathogenesis-related proteins. Might interact with the lipidic molecules of the plasma membrane. Elicitins are able to load, carry, and transfer sterols between membranes.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 32:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Cinnamon fungus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Archer, M]]	+	[[Category: Phytophthora cinnamomi]]
-	[[Category: Baptista~~, R P~~]]	+	[[Category: Archer M]]
-	[[Category: Carrondo~~, M A~~]]	+	[[Category: Baptista RP]]
-	[[Category: Cravador, A]]	+	[[Category: Carrondo MA]]
-	[[Category: Enguita~~, F J~~]]	+	[[Category: Cravador A]]
-	[[Category: Martel, P]]	+	[[Category: Enguita FJ]]
-	[[Category: Melo~~, E P~~]]	+	[[Category: Martel P]]
-	[[Category: Miranda, S]]	+	[[Category: Melo EP]]
-	[[Category: Rodrigues~~, M L~~]]	+	[[Category: Miranda S]]
-	[[Category: Sousa, N]]	+	[[Category: Rodrigues ML]]
-	[[Category: Thomaz, M]]	+	[[Category: Sousa N]]
-	~~[[Category: Elicitin]]~~	+	[[Category: Thomaz M]]
-	~~[[Category: Phytopathogen]]~~	+
-	~~[[Category: Phytophthora]]~~	+
-	~~[[Category: Sterol carrier protein]]~~	+
-	~~[[Category: Toxin~~]]	+

OCA at 08:27, 27 January 2021

OCA — Wed, 27 Jan 2021 08:27:30 GMT

←Older revision		Revision as of 08:27, 27 January 2021
Line 1:		Line 1:

	==beta-cinnamomin after sterol removal==		==beta-cinnamomin after sterol removal==
-	<StructureSection load='2a8f' size='340' side='right' caption='[[2a8f]], [[Resolution\|resolution]] 1.35Å' scene=''>	+	<StructureSection load='2a8f' size='340' side='right'caption='[[2a8f]], [[Resolution\|resolution]] 1.35Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2a8f]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Cinnamon_fungus Cinnamon fungus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A8F OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2A8F FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2a8f]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Cinnamon_fungus Cinnamon fungus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A8F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2A8F FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CIN1B ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4785 Cinnamon fungus])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CIN1B ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4785 Cinnamon fungus])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2a8f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a8f OCA], [~~http~~://pdbe.org/2a8f PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2a8f RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2a8f PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2a8f ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2a8f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a8f OCA], [https://pdbe.org/2a8f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2a8f RCSB], [https://www.ebi.ac.uk/pdbsum/2a8f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2a8f ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/ELIB_PHYCI ELIB_PHYCI]] Induces local and distal defense responses (incompatible hypersensitive reaction) in plants from the solanaceae and cruciferae families. Elicits leaf necrosis and causes the accumulation of pathogenesis-related proteins. Might interact with the lipidic molecules of the plasma membrane. Elicitins are able to load, carry, and transfer sterols between membranes.	+	[[https://www.uniprot.org/uniprot/ELIB_PHYCI ELIB_PHYCI]] Induces local and distal defense responses (incompatible hypersensitive reaction) in plants from the solanaceae and cruciferae families. Elicits leaf necrosis and causes the accumulation of pathogenesis-related proteins. Might interact with the lipidic molecules of the plasma membrane. Elicitins are able to load, carry, and transfer sterols between membranes.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Cinnamon fungus]]		[[Category: Cinnamon fungus]]
		+	[[Category: Large Structures]]
	[[Category: Archer, M]]		[[Category: Archer, M]]
	[[Category: Baptista, R P]]		[[Category: Baptista, R P]]

OCA at 07:11, 9 May 2018

OCA — Wed, 09 May 2018 07:11:52 GMT

←Older revision		Revision as of 07:11, 9 May 2018
Line 1:		Line 1:
		+
	==beta-cinnamomin after sterol removal==		==beta-cinnamomin after sterol removal==
	<StructureSection load='2a8f' size='340' side='right' caption='[[2a8f]], [[Resolution\|resolution]] 1.35Å' scene=''>		<StructureSection load='2a8f' size='340' side='right' caption='[[2a8f]], [[Resolution\|resolution]] 1.35Å' scene=''>
Line 4:		Line 5:
	<table><tr><td colspan='2'>[[2a8f]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Cinnamon_fungus Cinnamon fungus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A8F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2A8F FirstGlance]. <br>		<table><tr><td colspan='2'>[[2a8f]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Cinnamon_fungus Cinnamon fungus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A8F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2A8F FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CIN1B ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4785 Cinnamon fungus])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CIN1B ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4785 Cinnamon fungus])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a8f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a8f OCA], [http://pdbe.org/2a8f PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2a8f RCSB], [http://www.ebi.ac.uk/pdbsum/2a8f PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a8f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a8f OCA], [http://pdbe.org/2a8f PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2a8f RCSB], [http://www.ebi.ac.uk/pdbsum/2a8f PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2a8f ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a8/2a8f_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a8/2a8f_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2a8f ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 00:52, 12 September 2015

OCA — Sat, 12 Sep 2015 00:52:14 GMT

←Older revision		Revision as of 00:52, 12 September 2015
Line 2:		Line 2:
	<StructureSection load='2a8f' size='340' side='right' caption='[[2a8f]], [[Resolution\|resolution]] 1.35Å' scene=''>		<StructureSection load='2a8f' size='340' side='right' caption='[[2a8f]], [[Resolution\|resolution]] 1.35Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2a8f]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Phytophthora_cinnamomi Phytophthora cinnamomi~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A8F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2A8F FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2a8f]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Cinnamon_fungus Cinnamon fungus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A8F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2A8F FirstGlance]. <br>
-	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CIN1B ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4785 ~~Phytophthora cinnamomi~~])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CIN1B ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4785 Cinnamon fungus])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a8f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a8f OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2a8f RCSB], [http://www.ebi.ac.uk/pdbsum/2a8f PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a8f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a8f OCA], [http://pdbe.org/2a8f PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2a8f RCSB], [http://www.ebi.ac.uk/pdbsum/2a8f PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2a8f" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Phytophthora cinnamomi~~]]	+	[[Category: Cinnamon fungus]]
	[[Category: Archer, M]]		[[Category: Archer, M]]
	[[Category: Baptista, R P]]		[[Category: Baptista, R P]]

OCA at 21:38, 25 December 2014

OCA — Thu, 25 Dec 2014 21:38:41 GMT

←Older revision		Revision as of 21:38, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2a8f]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Phytophthora_cinnamomi Phytophthora cinnamomi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A8F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2A8F FirstGlance]. <br>		<table><tr><td colspan='2'>[[2a8f]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Phytophthora_cinnamomi Phytophthora cinnamomi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A8F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2A8F FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CIN1B ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4785 Phytophthora cinnamomi])</td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CIN1B ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4785 Phytophthora cinnamomi])</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a8f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a8f OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2a8f RCSB], [http://www.ebi.ac.uk/pdbsum/2a8f PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a8f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a8f OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2a8f RCSB], [http://www.ebi.ac.uk/pdbsum/2a8f PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/ELIB_PHYCI ELIB_PHYCI]] Induces local and distal defense responses (incompatible hypersensitive reaction) in plants from the solanaceae and cruciferae families. Elicits leaf necrosis and causes the accumulation of pathogenesis-related proteins. Might interact with the lipidic molecules of the plasma membrane. Elicitins are able to load, carry, and transfer sterols between membranes.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Phytophthora cinnamomi]]		[[Category: Phytophthora cinnamomi]]
-	[[Category: Archer, M.]]	+	[[Category: Archer, M]]
-	[[Category: Baptista, R P.]]	+	[[Category: Baptista, R P]]
-	[[Category: Carrondo, M A.]]	+	[[Category: Carrondo, M A]]
-	[[Category: Cravador, A.]]	+	[[Category: Cravador, A]]
-	[[Category: Enguita, F J.]]	+	[[Category: Enguita, F J]]
-	[[Category: Martel, P.]]	+	[[Category: Martel, P]]
-	[[Category: Melo, E P.]]	+	[[Category: Melo, E P]]
-	[[Category: Miranda, S.]]	+	[[Category: Miranda, S]]
-	[[Category: Rodrigues, M L.]]	+	[[Category: Rodrigues, M L]]
-	[[Category: Sousa, N.]]	+	[[Category: Sousa, N]]
-	[[Category: Thomaz, M.]]	+	[[Category: Thomaz, M]]
	[[Category: Elicitin]]		[[Category: Elicitin]]
	[[Category: Phytopathogen]]		[[Category: Phytopathogen]]

OCA at 01:11, 30 September 2014

OCA — Tue, 30 Sep 2014 01:11:59 GMT

←Older revision		Revision as of 01:11, 30 September 2014
Line 1:		Line 1:
-	[[~~Image~~:2a8f.~~png\|left~~\|200px]]	+	==beta-cinnamomin after sterol removal==
		+	<StructureSection load='2a8f' size='340' side='right' caption='[[2a8f]], [[Resolution\|resolution]] 1.35Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2a8f]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Phytophthora_cinnamomi Phytophthora cinnamomi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A8F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2A8F FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CIN1B ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4785 Phytophthora cinnamomi])</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2a8f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2a8f OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2a8f RCSB], [http://www.ebi.ac.uk/pdbsum/2a8f PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a8/2a8f_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The crystal structure of the elicitin beta-cinnamomin (beta-CIN) was determined in complex with ergosterol at 1.1 A resolution. beta-CIN/ergosterol complex crystallized in the monoclinic space group P2(1), with unit cell parameters of a = 31.0, b = 62.8, c = 50.0 A and beta = 93.4 degrees and two molecules in the asymmetric unit. Ligand extraction with chloroform followed by crystallographic analysis yielded a 1.35 A structure of beta-CIN (P4(3)2(1)2 space group) where the characteristic elicitin fold was kept. After incubation with cholesterol, a new complex structure was obtained, showing that the protein retains, after the extraction procedure, its ability to complex sterols. The necrotic effect of beta-CIN on tobacco was also shown to remain unchanged. Theoretical docking studies of the triterpene lupeol to beta-CIN provided an explanation for the apparent inability of beta-CIN to bind this ligand, as observed experimentally.

-	~~{{STRUCTURE_2a8f\| PDB=2a8f \| SCENE= }}~~	+	Crystal structures of the free and sterol-bound forms of beta-cinnamomin.,Rodrigues ML, Archer M, Martel P, Miranda S, Thomaz M, Enguita FJ, Baptista RP, Pinho e Melo E, Sousa N, Cravador A, Carrondo MA Biochim Biophys Acta. 2006 Jan;1764(1):110-21. Epub 2005 Oct 6. PMID:16249127<ref>PMID:16249127</ref>

-	~~===beta-cinnamomin after sterol removal===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_16249127}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2a8f]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Phytophthora_cinnamomi Phytophthora cinnamomi]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2A8F OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:016249127<~~/~~ref~~><~~ref group="xtra">PMID:012136143</ref><references group="xtra"~~/>	+
	[[Category: Phytophthora cinnamomi]]		[[Category: Phytophthora cinnamomi]]
	[[Category: Archer, M.]]		[[Category: Archer, M.]]

OCA at 12:18, 23 January 2013

OCA — Wed, 23 Jan 2013 12:18:19 GMT

←Older revision		Revision as of 12:18, 23 January 2013
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	[[Image:2a8f.png\|left\|200px]]		[[Image:2a8f.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2a8f", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2a8f\| PDB=2a8f \| SCENE= }}		{{STRUCTURE_2a8f\| PDB=2a8f \| SCENE= }}

	===beta-cinnamomin after sterol removal===		===beta-cinnamomin after sterol removal===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_16249127}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 16249127 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_16249127}}		{{ABSTRACT_PUBMED_16249127}}

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	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~16249127~~</ref><ref group="xtra">PMID:~~12136143</ref><ref group="xtra">PMID:10520754~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:016249127</ref><ref group="xtra">PMID:012136143</ref><references group="xtra"/>
	[[Category: Phytophthora cinnamomi]]		[[Category: Phytophthora cinnamomi]]
	[[Category: Archer, M.]]		[[Category: Archer, M.]]

OCA: Protected "2a8f" [edit=sysop:move=sysop]

OCA — Mon, 14 Mar 2011 20:37:58 GMT

Protected "2a8f" [edit=sysop:move=sysop]

←Older revision

Revision as of 20:37, 14 March 2011

OCA at 20:37, 14 March 2011

OCA — Mon, 14 Mar 2011 20:37:56 GMT

←Older revision		Revision as of 20:37, 14 March 2011
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-	{{Seed}}
	[[Image:2a8f.png\|left\|200px]]		[[Image:2a8f.png\|left\|200px]]

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	==About this Structure==		==About this Structure==
-	~~2A8F~~ is a 2 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Phytophthora_cinnamomi Phytophthora cinnamomi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A8F OCA].	+	[[2a8f]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Phytophthora_cinnamomi Phytophthora cinnamomi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A8F OCA].

	==Reference==		==Reference==
Line 40:		Line 39:
	[[Category: Phytophthora]]		[[Category: Phytophthora]]
	[[Category: Sterol carrier protein]]		[[Category: Sterol carrier protein]]
-		+	[[Category: Toxin]]
-	~~''Page seeded by~~ [~~http~~:~~//oca.weizmann.ac.il/oca OCA~~ ] ~~on Wed Feb 18 08:40:53 2009''~~	+

OCA at 06:40, 18 February 2009

OCA — Wed, 18 Feb 2009 06:40:54 GMT

←Older revision		Revision as of 06:40, 18 February 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	2A8F is a ~~[[Single protein]]~~ structure of ~~sequence~~ from [http://en.wikipedia.org/wiki/Phytophthora_cinnamomi Phytophthora cinnamomi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A8F OCA].	+	2A8F is a 2 chains structure of sequences from [http://en.wikipedia.org/wiki/Phytophthora_cinnamomi Phytophthora cinnamomi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2A8F OCA].

	==Reference==		==Reference==
-	Crystal structures of the free and sterol-bound forms of beta-cinnamomin., Rodrigues ML, Archer M, Martel P, Miranda S, Thomaz M, Enguita FJ, Baptista RP, Pinho e Melo E, Sousa N, Cravador A, Carrondo MA, Biochim Biophys Acta. 2006 Jan;1764(1):110-21. Epub 2005 Oct 6. PMID:~~[http:~~/~~/www.ncbi.nlm.nih.gov/pubmed/16249127 16249127]~~	+	<ref group="xtra">PMID:16249127</ref><ref group="xtra">PMID:12136143</ref><ref group="xtra">PMID:10520754</ref><references group="xtra"/>
-		+
-	Structure of beta-cinnamomin, a protein toxic to some plant species., Rodrigues ML, Archer M, Martel P, Jacquet A, Cravador A, Carrondo MA, Acta Crystallogr D Biol Crystallogr. 2002 Aug;58(Pt 8):1314-21. Epub 2002, Jul 20. PMID:~~[http:~~/~~/www.ncbi.nlm.nih.gov/pubmed/12136143 12136143]~~	+
-		+
-	~~Identification of an elicitin gene cluster in Phytophthora cinnamomi., Duclos J, Fauconnier A, Coelho AC, Bollen A, Cravador A, Godfroid E, DNA Seq. 1998;9(4):231-7.~~ PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/10520754 10520754]~~	+
	[[Category: Phytophthora cinnamomi]]		[[Category: Phytophthora cinnamomi]]
-	[[Category: Single protein]]
	[[Category: Archer, M.]]		[[Category: Archer, M.]]
	[[Category: Baptista, R P.]]		[[Category: Baptista, R P.]]
Line 46:		Line 41:
	[[Category: Sterol carrier protein]]		[[Category: Sterol carrier protein]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on ~~Tue Jul 29 14~~:53:~~04 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 08:40:53 2009''