2abb - Revision history

OCA at 08:17, 25 October 2023

OCA — Wed, 25 Oct 2023 08:17:01 GMT

←Older revision		Revision as of 08:17, 25 October 2023
Line 3:		Line 3:
	<StructureSection load='2abb' size='340' side='right'caption='[[2abb]], [[Resolution\|resolution]] 1.00Å' scene=''>		<StructureSection load='2abb' size='340' side='right'caption='[[2abb]], [[Resolution\|resolution]] 1.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2abb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"aerobacter_cloacae"_(jordan_1890)_bergey_et_al._1923 "aerobacter~~ cloacae~~" (jordan 1890) bergey et al. 1923~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ABB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ABB FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2abb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterobacter_cloacae Enterobacter cloacae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ABB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ABB FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1h60\|1h60]], [[1vyr\|1vyr]], [[2aba\|2aba]]</div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2abb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2abb OCA], [https://pdbe.org/2abb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2abb RCSB], [https://www.ebi.ac.uk/pdbsum/2abb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2abb ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2abb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2abb OCA], [https://pdbe.org/2abb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2abb RCSB], [https://www.ebi.ac.uk/pdbsum/2abb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2abb ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/P71278_ENTCL P71278_ENTCL]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Enterobacter cloacae]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Barna, T]]	+	[[Category: Barna T]]
-	[[Category: Bruce~~, N C~~]]	+	[[Category: Bruce NC]]
-	[[Category: Khan, H]]	+	[[Category: Khan H]]
-	[[Category: Leys, D]]	+	[[Category: Leys D]]
-	[[Category: Munro~~, A W~~]]	+	[[Category: Munro AW]]
-	[[Category: Scrutton~~, N S]]~~	+	[[Category: Scrutton NS]]
-	~~[[Category: Flavoenzyme]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: Petn reductase]]~~	+
-	~~[[Category: Proton transfer~~]]	+

OCA at 06:44, 10 November 2021

OCA — Wed, 10 Nov 2021 06:44:52 GMT

←Older revision		Revision as of 06:44, 10 November 2021
Line 3:		Line 3:
	<StructureSection load='2abb' size='340' side='right'caption='[[2abb]], [[Resolution\|resolution]] 1.00Å' scene=''>		<StructureSection load='2abb' size='340' side='right'caption='[[2abb]], [[Resolution\|resolution]] 1.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2abb]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"aerobacter_cloacae"_(jordan_1890)_bergey_et_al._1923 "aerobacter cloacae" (jordan 1890) bergey et al. 1923]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ABB OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2ABB FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2abb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"aerobacter_cloacae"_(jordan_1890)_bergey_et_al._1923 "aerobacter cloacae" (jordan 1890) bergey et al. 1923]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ABB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ABB FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1h60\|1h60]], [[1vyr\|1vyr]], [[2aba\|2aba]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1h60\|1h60]], [[1vyr\|1vyr]], [[2aba\|2aba]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2abb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2abb OCA], [~~http~~://pdbe.org/2abb PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2abb RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2abb PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2abb ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2abb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2abb OCA], [https://pdbe.org/2abb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2abb RCSB], [https://www.ebi.ac.uk/pdbsum/2abb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2abb ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 05:12, 13 February 2020

OCA — Thu, 13 Feb 2020 05:12:14 GMT

←Older revision		Revision as of 05:12, 13 February 2020
Line 1:		Line 1:

	==Structure of PETN reductase Y186F in complex with cyanide==		==Structure of PETN reductase Y186F in complex with cyanide==
-	<StructureSection load='2abb' size='340' side='right' caption='[[2abb]], [[Resolution\|resolution]] 1.00Å' scene=''>	+	<StructureSection load='2abb' size='340' side='right'caption='[[2abb]], [[Resolution\|resolution]] 1.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2abb]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"aerobacter_cloacae"_(jordan_1890)_bergey_et_al._1923 "aerobacter cloacae" (jordan 1890) bergey et al. 1923]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ABB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ABB FirstGlance]. <br>		<table><tr><td colspan='2'>[[2abb]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"aerobacter_cloacae"_(jordan_1890)_bergey_et_al._1923 "aerobacter cloacae" (jordan 1890) bergey et al. 1923]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ABB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ABB FirstGlance]. <br>
Line 34:		Line 34:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Barna, T]]		[[Category: Barna, T]]
	[[Category: Bruce, N C]]		[[Category: Bruce, N C]]

OCA at 07:02, 9 May 2018

OCA — Wed, 09 May 2018 07:02:18 GMT

←Older revision		Revision as of 07:02, 9 May 2018
Line 1:		Line 1:
		+
	==Structure of PETN reductase Y186F in complex with cyanide==		==Structure of PETN reductase Y186F in complex with cyanide==
	<StructureSection load='2abb' size='340' side='right' caption='[[2abb]], [[Resolution\|resolution]] 1.00Å' scene=''>		<StructureSection load='2abb' size='340' side='right' caption='[[2abb]], [[Resolution\|resolution]] 1.00Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1h60\|1h60]], [[1vyr\|1vyr]], [[2aba\|2aba]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1h60\|1h60]], [[1vyr\|1vyr]], [[2aba\|2aba]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2abb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2abb OCA], [http://pdbe.org/2abb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2abb RCSB], [http://www.ebi.ac.uk/pdbsum/2abb PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2abb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2abb OCA], [http://pdbe.org/2abb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2abb RCSB], [http://www.ebi.ac.uk/pdbsum/2abb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2abb ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ab/2abb_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ab/2abb_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2abb ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 23:04, 11 September 2015

OCA — Fri, 11 Sep 2015 23:04:27 GMT

←Older revision		Revision as of 23:04, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='2abb' size='340' side='right' caption='[[2abb]], [[Resolution\|resolution]] 1.00Å' scene=''>		<StructureSection load='2abb' size='340' side='right' caption='[[2abb]], [[Resolution\|resolution]] 1.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2abb]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Enterobacter_cloacae Enterobacter~~ cloacae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ABB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ABB FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2abb]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"aerobacter_cloacae"_(jordan_1890)_bergey_et_al._1923 "aerobacter cloacae" (jordan 1890) bergey et al. 1923]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ABB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ABB FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1h60\|1h60]], [[1vyr\|1vyr]], [[2aba\|2aba]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1h60\|1h60]], [[1vyr\|1vyr]], [[2aba\|2aba]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2abb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2abb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2abb RCSB], [http://www.ebi.ac.uk/pdbsum/2abb PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2abb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2abb OCA], [http://pdbe.org/2abb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2abb RCSB], [http://www.ebi.ac.uk/pdbsum/2abb PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2abb" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 32:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Enterobacter cloacae]]
	[[Category: Barna, T]]		[[Category: Barna, T]]
	[[Category: Bruce, N C]]		[[Category: Bruce, N C]]

OCA at 10:15, 8 January 2015

OCA — Thu, 08 Jan 2015 10:15:30 GMT

←Older revision		Revision as of 10:15, 8 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2abb]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacter_cloacae Enterobacter cloacae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ABB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ABB FirstGlance]. <br>		<table><tr><td colspan='2'>[[2abb]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacter_cloacae Enterobacter cloacae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ABB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ABB FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1h60\|1h60]], [[1vyr\|1vyr]], [[2aba\|2aba]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1h60\|1h60]], [[1vyr\|1vyr]], [[2aba\|2aba]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2abb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2abb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2abb RCSB], [http://www.ebi.ac.uk/pdbsum/2abb PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2abb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2abb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2abb RCSB], [http://www.ebi.ac.uk/pdbsum/2abb PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Enterobacter cloacae]]		[[Category: Enterobacter cloacae]]
-	[[Category: Barna, T.]]	+	[[Category: Barna, T]]
-	[[Category: Bruce, N C.]]	+	[[Category: Bruce, N C]]
-	[[Category: Khan, H.]]	+	[[Category: Khan, H]]
-	[[Category: Leys, D.]]	+	[[Category: Leys, D]]
-	[[Category: Munro, A W.]]	+	[[Category: Munro, A W]]
-	[[Category: Scrutton, N S.]]	+	[[Category: Scrutton, N S]]
	[[Category: Flavoenzyme]]		[[Category: Flavoenzyme]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
	[[Category: Petn reductase]]		[[Category: Petn reductase]]
	[[Category: Proton transfer]]		[[Category: Proton transfer]]

OCA at 02:39, 30 September 2014

OCA — Tue, 30 Sep 2014 02:39:02 GMT

←Older revision		Revision as of 02:39, 30 September 2014
Line 1:		Line 1:
-	~~{{STRUCTURE_2abb~~\| ~~PDB~~=2abb \| ~~SCENE~~= }}	+	==Structure of PETN reductase Y186F in complex with cyanide==
-	===~~Structure~~ of PETN reductase Y186F in complex with ~~cyanide===~~	+	<StructureSection load='2abb' size='340' side='right' caption='[[2abb]], [[Resolution\|resolution]] 1.00Å' scene=''>
-	~~{{ABSTRACT_PUBMED_16156787}}~~	+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2abb]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacter_cloacae Enterobacter cloacae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ABB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ABB FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=IPA:ISOPROPYL+ALCOHOL'>IPA</scene>, <scene name='pdbligand=SCN:THIOCYANATE+ION'>SCN</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1h60\|1h60]], [[1vyr\|1vyr]], [[2aba\|2aba]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2abb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2abb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2abb RCSB], [http://www.ebi.ac.uk/pdbsum/2abb PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ab/2abb_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The roles of His181, His184 and Tyr186 in PETN reductase have been examined by mutagenesis, spectroscopic and stopped-flow kinetics, and by determination of crystallographic structures for the Y186F PETN reductase and reduced wild-type enzyme-progesterone complex. Residues His181 and His184 are important in the binding of coenzyme, steroids, nitroaromatic ligands and the substrate 2-cyclohexen-1-one. The H181A and H184A enzymes retain activity in reductive and oxidative half-reactions, and thus do not play an essential role in catalysis. Ligand binding and catalysis is not substantially impaired in Y186F PETN reductase, which contrasts with data for the equivalent mutation (Y196F) in Old Yellow Enzyme. The structure of Y186F PETN reductase is identical to wild-type enzyme, with the obvious exception of the mutation. We show in PETN reductase that Tyr186 is not a key proton donor in the reduction of alpha/beta unsaturated carbonyl compounds. The structure of two electron-reduced PETN reductase bound to the inhibitor progesterone mimics the catalytic enzyme-steroid substrate complex and is similar to the structure of the oxidized enzyme-inhibitor complex. The reactive C1-C2 unsaturated bond of the steroid is inappropriately orientated with the flavin N5 atom for hydride transfer. With steroid substrates, the productive conformation is achieved by orientating the steroid through flipping by 180 degrees , consistent with known geometries for hydride transfer in flavoenzymes. Our data highlight mechanistic differences between Old Yellow Enzyme and PETN reductase and indicate that catalysis requires a metastable enzyme-steroid complex and not the most stable complex observed in crystallographic studies.

-	~~==About this~~ Structure==	+	Proton transfer in the oxidative half-reaction of pentaerythritol tetranitrate reductase. Structure of the reduced enzyme-progesterone complex and the roles of residues Tyr186, His181, His184.,Khan H, Barna T, Bruce NC, Munro AW, Leys D, Scrutton NS FEBS J. 2005 Sep;272(18):4660-71. PMID:16156787<ref>PMID:16156787</ref>
-	~~[[2abb]] is a 1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Enterobacter_cloacae Enterobacter cloacae]~~. ~~Full crystallographic information is available from [http~~://~~oca~~.~~weizmann~~.ac.il/~~oca-bin/ocashort?id=2ABB OCA].~~	+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>

	==See Also==		==See Also==
	*[[Pentaerythritol tetranitrate reductase\|Pentaerythritol tetranitrate reductase]]		*[[Pentaerythritol tetranitrate reductase\|Pentaerythritol tetranitrate reductase]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:016156787<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Enterobacter cloacae]]		[[Category: Enterobacter cloacae]]
	[[Category: Barna, T.]]		[[Category: Barna, T.]]

OCA at 10:58, 11 March 2013

OCA — Mon, 11 Mar 2013 10:58:09 GMT

←Older revision		Revision as of 10:58, 11 March 2013
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	{{STRUCTURE_2abb\| PDB=2abb \| SCENE= }}		{{STRUCTURE_2abb\| PDB=2abb \| SCENE= }}
-
	===Structure of PETN reductase Y186F in complex with cyanide===		===Structure of PETN reductase Y186F in complex with cyanide===
-
-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_16156787}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 16156787 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_16156787}}		{{ABSTRACT_PUBMED_16156787}}

	==About this Structure==		==About this Structure==
	[[2abb]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacter_cloacae Enterobacter cloacae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ABB OCA].		[[2abb]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacter_cloacae Enterobacter cloacae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ABB OCA].
		+
		+	==See Also==
		+	*[[Pentaerythritol tetranitrate reductase\|Pentaerythritol tetranitrate reductase]]

	==Reference==		==Reference==

OCA: Protected "2abb" [edit=sysop:move=sysop]

OCA — Wed, 24 Aug 2011 05:46:08 GMT

Protected "2abb" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:46, 24 August 2011

OCA at 05:46, 24 August 2011

OCA — Wed, 24 Aug 2011 05:46:06 GMT

←Older revision		Revision as of 05:46, 24 August 2011
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-	{{Seed}}
	[[Image:2abb.png\|left\|200px]]		[[Image:2abb.png\|left\|200px]]

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	==About this Structure==		==About this Structure==
-	~~2ABB~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Enterobacter_cloacae Enterobacter cloacae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ABB OCA].	+	[[2abb]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacter_cloacae Enterobacter cloacae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ABB OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~16156787~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:016156787</ref><references group="xtra"/>
	[[Category: Enterobacter cloacae]]		[[Category: Enterobacter cloacae]]
	[[Category: Barna, T.]]		[[Category: Barna, T.]]
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	[[Category: Scrutton, N S.]]		[[Category: Scrutton, N S.]]
	[[Category: Flavoenzyme]]		[[Category: Flavoenzyme]]
		+	[[Category: Oxidoreductase]]
	[[Category: Petn reductase]]		[[Category: Petn reductase]]
	[[Category: Proton transfer]]		[[Category: Proton transfer]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Feb 18 06:29:57 2009''