2amg - Revision history

OCA at 08:18, 15 May 2024

OCA — Wed, 15 May 2024 08:18:50 GMT

←Older revision		Revision as of 08:18, 15 May 2024
Line 4:		Line 4:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2amg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_stutzeri Pseudomonas stutzeri]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1amg 1amg]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AMG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AMG FirstGlance]. <br>		<table><tr><td colspan='2'>[[2amg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_stutzeri Pseudomonas stutzeri]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1amg 1amg]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AMG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AMG FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2Å</td></tr>
-	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks~~'>[https://en.wikipedia.org/wiki/Glucan_1,4-alpha-maltotetraohydrolase Glucan 1,4-alpha-maltotetraohydrolase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.60 3.2.1.60] </~~span~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2amg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2amg OCA], [https://pdbe.org/2amg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2amg RCSB], [https://www.ebi.ac.uk/pdbsum/2amg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2amg ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2amg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2amg OCA], [https://pdbe.org/2amg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2amg RCSB], [https://www.ebi.ac.uk/pdbsum/2amg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2amg ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/AMT4_STUST AMT4_STUST]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Glucan 1,4-alpha-maltotetraohydrolase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Pseudomonas stutzeri]]		[[Category: Pseudomonas stutzeri]]
-	[[Category: Hasegawa, K]]	+	[[Category: Hasegawa K]]
-	[[Category: Katsube, Y]]	+	[[Category: Katsube Y]]
-	[[Category: Kubota, M]]	+	[[Category: Kubota M]]
-	[[Category: Matsuura, Y]]	+	[[Category: Matsuura Y]]
-	[[Category: Morishita, Y]]	+	[[Category: Morishita Y]]
-	[[Category: Sakai, S]]	+	[[Category: Sakai S]]
-	~~[[Category: Carbohydrate metabolism]]~~	+
-	~~[[Category: Glycosidase]]~~	+
-	~~[[Category: Hydrolase~~]]	+

OCA at 14:42, 17 November 2021

OCA — Wed, 17 Nov 2021 14:42:53 GMT

←Older revision		Revision as of 14:42, 17 November 2021
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	<StructureSection load='2amg' size='340' side='right'caption='[[2amg]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='2amg' size='340' side='right'caption='[[2amg]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2amg]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Pseudomonas_stutzeri Pseudomonas stutzeri]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1amg 1amg]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AMG OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2AMG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2amg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_stutzeri Pseudomonas stutzeri]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1amg 1amg]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AMG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2AMG FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Glucan_1,4-alpha-maltotetraohydrolase Glucan 1,4-alpha-maltotetraohydrolase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.60 3.2.1.60] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Glucan_1,4-alpha-maltotetraohydrolase Glucan 1,4-alpha-maltotetraohydrolase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.60 3.2.1.60] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2amg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2amg OCA], [~~http~~://pdbe.org/2amg PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2amg RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2amg PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2amg ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2amg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2amg OCA], [https://pdbe.org/2amg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2amg RCSB], [https://www.ebi.ac.uk/pdbsum/2amg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2amg ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 05:26, 13 February 2020

OCA — Thu, 13 Feb 2020 05:26:23 GMT

←Older revision		Revision as of 05:26, 13 February 2020
Line 1:		Line 1:

	==STRUCTURE OF HYDROLASE (GLYCOSIDASE)==		==STRUCTURE OF HYDROLASE (GLYCOSIDASE)==
-	<StructureSection load='2amg' size='340' side='right' caption='[[2amg]], [[Resolution\|resolution]] 2.00Å' scene=''>	+	<StructureSection load='2amg' size='340' side='right'caption='[[2amg]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2amg]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_stutzeri Pseudomonas stutzeri]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1amg 1amg]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AMG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2AMG FirstGlance]. <br>		<table><tr><td colspan='2'>[[2amg]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_stutzeri Pseudomonas stutzeri]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1amg 1amg]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AMG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2AMG FirstGlance]. <br>
Line 32:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Glucan 1,4-alpha-maltotetraohydrolase]]		[[Category: Glucan 1,4-alpha-maltotetraohydrolase]]
		+	[[Category: Large Structures]]
	[[Category: Pseudomonas stutzeri]]		[[Category: Pseudomonas stutzeri]]
	[[Category: Hasegawa, K]]		[[Category: Hasegawa, K]]

OCA at 07:18, 9 May 2018

OCA — Wed, 09 May 2018 07:18:45 GMT

←Older revision		Revision as of 07:18, 9 May 2018
Line 1:		Line 1:
		+
	==STRUCTURE OF HYDROLASE (GLYCOSIDASE)==		==STRUCTURE OF HYDROLASE (GLYCOSIDASE)==
	<StructureSection load='2amg' size='340' side='right' caption='[[2amg]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='2amg' size='340' side='right' caption='[[2amg]], [[Resolution\|resolution]] 2.00Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucan_1,4-alpha-maltotetraohydrolase Glucan 1,4-alpha-maltotetraohydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.60 3.2.1.60] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucan_1,4-alpha-maltotetraohydrolase Glucan 1,4-alpha-maltotetraohydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.60 3.2.1.60] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2amg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2amg OCA], [http://pdbe.org/2amg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2amg RCSB], [http://www.ebi.ac.uk/pdbsum/2amg PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2amg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2amg OCA], [http://pdbe.org/2amg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2amg RCSB], [http://www.ebi.ac.uk/pdbsum/2amg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2amg ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/am/2amg_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/am/2amg_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 23:33, 7 February 2016

OCA — Sun, 07 Feb 2016 23:33:20 GMT

←Older revision		Revision as of 23:33, 7 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2amg ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 05:52, 10 September 2015

OCA — Thu, 10 Sep 2015 05:52:20 GMT

←Older revision		Revision as of 05:52, 10 September 2015
Line 5:		Line 5:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucan_1,4-alpha-maltotetraohydrolase Glucan 1,4-alpha-maltotetraohydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.60 3.2.1.60] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucan_1,4-alpha-maltotetraohydrolase Glucan 1,4-alpha-maltotetraohydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.60 3.2.1.60] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2amg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2amg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2amg RCSB], [http://www.ebi.ac.uk/pdbsum/2amg PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2amg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2amg OCA], [http://pdbe.org/2amg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2amg RCSB], [http://www.ebi.ac.uk/pdbsum/2amg PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2amg" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 09:39, 8 January 2015

OCA — Thu, 08 Jan 2015 09:39:27 GMT

←Older revision		Revision as of 09:39, 8 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2amg]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_stutzeri Pseudomonas stutzeri]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1amg 1amg]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AMG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2AMG FirstGlance]. <br>		<table><tr><td colspan='2'>[[2amg]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_stutzeri Pseudomonas stutzeri]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1amg 1amg]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AMG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2AMG FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucan_1,4-alpha-maltotetraohydrolase Glucan 1,4-alpha-maltotetraohydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.60 3.2.1.60] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucan_1,4-alpha-maltotetraohydrolase Glucan 1,4-alpha-maltotetraohydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.60 3.2.1.60] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2amg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2amg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2amg RCSB], [http://www.ebi.ac.uk/pdbsum/2amg PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2amg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2amg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2amg RCSB], [http://www.ebi.ac.uk/pdbsum/2amg PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 31:
	[[Category: Glucan 1,4-alpha-maltotetraohydrolase]]		[[Category: Glucan 1,4-alpha-maltotetraohydrolase]]
	[[Category: Pseudomonas stutzeri]]		[[Category: Pseudomonas stutzeri]]
-	[[Category: Hasegawa, K.]]	+	[[Category: Hasegawa, K]]
-	[[Category: Katsube, Y.]]	+	[[Category: Katsube, Y]]
-	[[Category: Kubota, M.]]	+	[[Category: Kubota, M]]
-	[[Category: Matsuura, Y.]]	+	[[Category: Matsuura, Y]]
-	[[Category: Morishita, Y.]]	+	[[Category: Morishita, Y]]
-	[[Category: Sakai, S.]]	+	[[Category: Sakai, S]]
	[[Category: Carbohydrate metabolism]]		[[Category: Carbohydrate metabolism]]
	[[Category: Glycosidase]]		[[Category: Glycosidase]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 02:06, 30 September 2014

OCA — Tue, 30 Sep 2014 02:06:21 GMT

←Older revision		Revision as of 02:06, 30 September 2014
Line 1:		Line 1:
-	[[~~Image~~:2amg.~~png\|left~~\|200px]]	+	==STRUCTURE OF HYDROLASE (GLYCOSIDASE)==
		+	<StructureSection load='2amg' size='340' side='right' caption='[[2amg]], [[Resolution\|resolution]] 2.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2amg]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_stutzeri Pseudomonas stutzeri]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1amg 1amg]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AMG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2AMG FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene><br>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Glucan_1,4-alpha-maltotetraohydrolase Glucan 1,4-alpha-maltotetraohydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.60 3.2.1.60] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2amg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2amg OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2amg RCSB], [http://www.ebi.ac.uk/pdbsum/2amg PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/am/2amg_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The three-dimensional structure of an exo-type alpha-amylase from Pseudomonas stutzeri which degrades starch from its non-reducing end to produce maltotetraose has been determined by X-ray structure analysis. The catalytic domain of this enzyme (G4-2), whose structure was determined, is a product of spontaneous limited proteolysis in culture broth. It has 429 amino acid residues and a molecular mass of 47,200, and crystallizes in ammonium sulfate solution at pH 7.5. The structure was elucidated by the multiple isomorphous replacement method and refined at 2.0 A resolution, resulting in a final R-factor of 0.178 for significant reflections with a root-mean-square deviation from ideality in bond distances of 0.013 A. The polypeptide chain of this molecule folds into three domains; the first with a (beta/alpha)8 barrel structure, the second with an excursed part from the first one, and the third with five-stranded antiparallel beta-sheets. The active cleft is formed on the C-terminal side of the beta-sheets in the (beta/alpha)8 barrel as in the known endo-type alpha-amylases. A histidine side-chain nitrogen ND1 is coordinated to one of the bound calcium ion. The recognition site of the non-reducing end of the amylose that determines exo-wise degradation is presumed to be at one end of this cleft where there is a disordered loop consisting of the 66th to 72nd residues, and a loop carrying an aspartic acid (Asp160). These structural features may be responsible for the binding of the non-reducing end of the substrate amylose.

-	~~{{STRUCTURE_2amg\| PDB=2amg \| SCENE= }}~~	+	Crystal structure of a maltotetraose-forming exo-amylase from Pseudomonas stutzeri.,Morishita Y, Hasegawa K, Matsuura Y, Katsube Y, Kubota M, Sakai S J Mol Biol. 1997 Apr 4;267(3):661-72. PMID:9126844<ref>PMID:9126844</ref>

-	~~===STRUCTURE OF HYDROLASE (GLYCOSIDASE)===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_9126844}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2amg]] is~~ a ~~1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_stutzeri Pseudomonas stutzeri]. This structure supersedes~~ the ~~now removed PDB entry [http://oca~~.~~weizmann~~.ac.il/~~oca-bin/send-pdb?obs=1&id=1amg 1amg]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AMG OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:009126844<~~/~~ref~~><~~ref group="xtra">PMID:011272837</ref><references group="xtra"~~/>	+
	[[Category: Glucan 1,4-alpha-maltotetraohydrolase]]		[[Category: Glucan 1,4-alpha-maltotetraohydrolase]]
	[[Category: Pseudomonas stutzeri]]		[[Category: Pseudomonas stutzeri]]

OCA: Protected "2amg" [edit=sysop:move=sysop]

OCA — Sun, 06 Jan 2013 11:19:19 GMT

Protected "2amg" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:19, 6 January 2013

OCA at 11:19, 6 January 2013

OCA — Sun, 06 Jan 2013 11:19:15 GMT

←Older revision		Revision as of 11:19, 6 January 2013
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-	{{Seed}}
	[[Image:2amg.png\|left\|200px]]		[[Image:2amg.png\|left\|200px]]

-	<!--
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	{{STRUCTURE_2amg\| PDB=2amg \| SCENE= }}		{{STRUCTURE_2amg\| PDB=2amg \| SCENE= }}

	===STRUCTURE OF HYDROLASE (GLYCOSIDASE)===		===STRUCTURE OF HYDROLASE (GLYCOSIDASE)===

-
-	<!--
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	{{ABSTRACT_PUBMED_9126844}}		{{ABSTRACT_PUBMED_9126844}}

	==About this Structure==		==About this Structure==
-	~~2AMG~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_stutzeri Pseudomonas stutzeri]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1amg 1amg]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AMG OCA].	+	[[2amg]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_stutzeri Pseudomonas stutzeri]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1amg 1amg]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2AMG OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~9126844~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:009126844</ref><ref group="xtra">PMID:011272837</ref><references group="xtra"/>
	[[Category: Glucan 1,4-alpha-maltotetraohydrolase]]		[[Category: Glucan 1,4-alpha-maltotetraohydrolase]]
	[[Category: Pseudomonas stutzeri]]		[[Category: Pseudomonas stutzeri]]
Line 35:		Line 23:
	[[Category: Glycosidase]]		[[Category: Glycosidase]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
-	[[Category: Signal]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 17:13:13 2009''