2b3i - Revision history

OCA at 00:07, 28 December 2023

OCA — Thu, 28 Dec 2023 00:07:05 GMT

←Older revision		Revision as of 00:07, 28 December 2023
Line 1:		Line 1:

	==NMR SOLUTION STRUCTURE OF PLASTOCYANIN FROM THE PHOTOSYNTHETIC PROKARYOTE, PROCHLOROTHRIX HOLLANDICA (19 STRUCTURES)==		==NMR SOLUTION STRUCTURE OF PLASTOCYANIN FROM THE PHOTOSYNTHETIC PROKARYOTE, PROCHLOROTHRIX HOLLANDICA (19 STRUCTURES)==
-	<StructureSection load='2b3i' size='340' side='right'caption='[[2b3i~~]], [[NMR_Ensembles_of_Models \| 19 NMR models~~]]' scene=''>	+	<StructureSection load='2b3i' size='340' side='right'caption='[[2b3i]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2b3i]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Calu_1027 Calu 1027~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2B3I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2B3I FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2b3i]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Prochlorothrix_hollandica Prochlorothrix hollandica]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2B3I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2B3I FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CU1:COPPER+(I)+ION'>CU1</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>PETE ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~1223 CALU 1027])</td~~><~~/tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU1:COPPER+(I)+ION'>CU1</scene></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b></td><td class="sblockDat"><span class='plainlinks~~'>~~[https://en.wikipedia.org/wiki/Plastoquinol--plastocyanin_reductase Plastoquinol--plastocyanin reductase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.10.9.1 1.10.9.1]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2b3i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2b3i OCA], [https://pdbe.org/2b3i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2b3i RCSB], [https://www.ebi.ac.uk/pdbsum/2b3i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2b3i ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2b3i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2b3i OCA], [https://pdbe.org/2b3i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2b3i RCSB], [https://www.ebi.ac.uk/pdbsum/2b3i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2b3i ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/PLAS_PROHO PLAS_PROHO]] Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I.	+	[https://www.uniprot.org/uniprot/PLAS_PROHO PLAS_PROHO] Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 29:
	</div>		</div>
	<div class="pdbe-citations 2b3i" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 2b3i" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Plastocyanin 3D structures\|Plastocyanin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Calu 1027]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Plastoquinol--plastocyanin reductase~~]]	+	[[Category: Prochlorothrix hollandica]]
-	[[Category: Babu~~, C R~~]]	+	[[Category: Babu CR]]
-	[[Category: Bullerjahn~~, G S~~]]	+	[[Category: Bullerjahn GS]]
-	[[Category: Volkman~~, B F]]~~	+	[[Category: Volkman BF]]
-	~~[[Category: Electron transport]]~~	+
-	~~[[Category: Photosynthesis]]~~	+
-	~~[[Category: Type i copper protein~~]]	+

OCA at 06:15, 9 March 2022

OCA — Wed, 09 Mar 2022 06:15:50 GMT

←Older revision		Revision as of 06:15, 9 March 2022
Line 3:		Line 3:
	<StructureSection load='2b3i' size='340' side='right'caption='[[2b3i]], [[NMR_Ensembles_of_Models \| 19 NMR models]]' scene=''>		<StructureSection load='2b3i' size='340' side='right'caption='[[2b3i]], [[NMR_Ensembles_of_Models \| 19 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2b3i]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Ccap_1490/1 Ccap 1490/1~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2B3I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2B3I FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2b3i]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Calu_1027 Calu 1027]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2B3I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2B3I FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU1:COPPER+(I)+ION'>CU1</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU1:COPPER+(I)+ION'>CU1</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PETE ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1223 ~~CCAP 1490/1~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PETE ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1223 CALU 1027])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Plastoquinol--plastocyanin_reductase Plastoquinol--plastocyanin reductase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.10.9.1 1.10.9.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Plastoquinol--plastocyanin_reductase Plastoquinol--plastocyanin reductase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.10.9.1 1.10.9.1] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2b3i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2b3i OCA], [https://pdbe.org/2b3i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2b3i RCSB], [https://www.ebi.ac.uk/pdbsum/2b3i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2b3i ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2b3i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2b3i OCA], [https://pdbe.org/2b3i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2b3i RCSB], [https://www.ebi.ac.uk/pdbsum/2b3i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2b3i ProSAT]</span></td></tr>
Line 34:		Line 34:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Ccap 1490/1~~]]	+	[[Category: Calu 1027]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Plastoquinol--plastocyanin reductase]]		[[Category: Plastoquinol--plastocyanin reductase]]

OCA at 11:33, 3 February 2021

OCA — Wed, 03 Feb 2021 11:33:27 GMT

←Older revision		Revision as of 11:33, 3 February 2021
Line 1:		Line 1:

	==NMR SOLUTION STRUCTURE OF PLASTOCYANIN FROM THE PHOTOSYNTHETIC PROKARYOTE, PROCHLOROTHRIX HOLLANDICA (19 STRUCTURES)==		==NMR SOLUTION STRUCTURE OF PLASTOCYANIN FROM THE PHOTOSYNTHETIC PROKARYOTE, PROCHLOROTHRIX HOLLANDICA (19 STRUCTURES)==
-	<StructureSection load='2b3i' size='340' side='right' caption='[[2b3i]], [[NMR_Ensembles_of_Models \| 19 NMR models]]' scene=''>	+	<StructureSection load='2b3i' size='340' side='right'caption='[[2b3i]], [[NMR_Ensembles_of_Models \| 19 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2b3i]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Ccap_1490/1 Ccap 1490/1]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2B3I OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2B3I FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2b3i]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ccap_1490/1 Ccap 1490/1]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2B3I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2B3I FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU1:COPPER+(I)+ION'>CU1</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU1:COPPER+(I)+ION'>CU1</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PETE ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1223 CCAP 1490/1])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PETE ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1223 CCAP 1490/1])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Plastoquinol--plastocyanin_reductase Plastoquinol--plastocyanin reductase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.10.9.1 1.10.9.1] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Plastoquinol--plastocyanin_reductase Plastoquinol--plastocyanin reductase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.10.9.1 1.10.9.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2b3i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2b3i OCA], [~~http~~://pdbe.org/2b3i PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2b3i RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2b3i PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2b3i ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2b3i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2b3i OCA], [https://pdbe.org/2b3i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2b3i RCSB], [https://www.ebi.ac.uk/pdbsum/2b3i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2b3i ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/PLAS_PROHO PLAS_PROHO]] Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I.	+	[[https://www.uniprot.org/uniprot/PLAS_PROHO PLAS_PROHO]] Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	</StructureSection>		</StructureSection>
	[[Category: Ccap 1490/1]]		[[Category: Ccap 1490/1]]
		+	[[Category: Large Structures]]
	[[Category: Plastoquinol--plastocyanin reductase]]		[[Category: Plastoquinol--plastocyanin reductase]]
	[[Category: Babu, C R]]		[[Category: Babu, C R]]

OCA at 06:52, 16 May 2018

OCA — Wed, 16 May 2018 06:52:14 GMT

←Older revision		Revision as of 06:52, 16 May 2018
Line 1:		Line 1:
		+
	==NMR SOLUTION STRUCTURE OF PLASTOCYANIN FROM THE PHOTOSYNTHETIC PROKARYOTE, PROCHLOROTHRIX HOLLANDICA (19 STRUCTURES)==		==NMR SOLUTION STRUCTURE OF PLASTOCYANIN FROM THE PHOTOSYNTHETIC PROKARYOTE, PROCHLOROTHRIX HOLLANDICA (19 STRUCTURES)==
	<StructureSection load='2b3i' size='340' side='right' caption='[[2b3i]], [[NMR_Ensembles_of_Models \| 19 NMR models]]' scene=''>		<StructureSection load='2b3i' size='340' side='right' caption='[[2b3i]], [[NMR_Ensembles_of_Models \| 19 NMR models]]' scene=''>
Line 6:		Line 7:
	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PETE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1223 CCAP 1490/1])</td></tr>		<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PETE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1223 CCAP 1490/1])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Plastoquinol--plastocyanin_reductase Plastoquinol--plastocyanin reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.10.9.1 1.10.9.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Plastoquinol--plastocyanin_reductase Plastoquinol--plastocyanin reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.10.9.1 1.10.9.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2b3i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2b3i OCA], [http://pdbe.org/2b3i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2b3i RCSB], [http://www.ebi.ac.uk/pdbsum/2b3i PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2b3i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2b3i OCA], [http://pdbe.org/2b3i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2b3i RCSB], [http://www.ebi.ac.uk/pdbsum/2b3i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2b3i ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 14:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b3/2b3i_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b3/2b3i_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 14:06, 9 February 2016

OCA — Tue, 09 Feb 2016 14:06:30 GMT

←Older revision		Revision as of 14:06, 9 February 2016
Line 18:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2b3i ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 22:57, 10 September 2015

OCA — Thu, 10 Sep 2015 22:57:58 GMT

←Older revision		Revision as of 22:57, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='2b3i' size='340' side='right' caption='[[2b3i]], [[NMR_Ensembles_of_Models \| 19 NMR models]]' scene=''>		<StructureSection load='2b3i' size='340' side='right' caption='[[2b3i]], [[NMR_Ensembles_of_Models \| 19 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2b3i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Prochlorothrix_hollandica Prochlorothrix hollandica~~]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2B3I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2B3I FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2b3i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ccap_1490/1 Ccap 1490/1]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2B3I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2B3I FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU1:COPPER+(I)+ION'>CU1</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU1:COPPER+(I)+ION'>CU1</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PETE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1223 ~~Prochlorothrix hollandica~~])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PETE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1223 CCAP 1490/1])</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Plastoquinol--plastocyanin_reductase Plastoquinol--plastocyanin reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.10.99.1 1.10.99.1] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Plastoquinol--plastocyanin_reductase Plastoquinol--plastocyanin reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.10.9.1 1.10.9.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2b3i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2b3i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2b3i RCSB], [http://www.ebi.ac.uk/pdbsum/2b3i PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2b3i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2b3i OCA], [http://pdbe.org/2b3i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2b3i RCSB], [http://www.ebi.ac.uk/pdbsum/2b3i PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 28:		Line 28:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2b3i" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Ccap 1490/1]]
	[[Category: Plastoquinol--plastocyanin reductase]]		[[Category: Plastoquinol--plastocyanin reductase]]
-	[[Category: Prochlorothrix hollandica]]
	[[Category: Babu, C R]]		[[Category: Babu, C R]]
	[[Category: Bullerjahn, G S]]		[[Category: Bullerjahn, G S]]

OCA at 07:16, 25 December 2014

OCA — Thu, 25 Dec 2014 07:16:58 GMT

←Older revision		Revision as of 07:16, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2b3i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Prochlorothrix_hollandica Prochlorothrix hollandica]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2B3I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2B3I FirstGlance]. <br>		<table><tr><td colspan='2'>[[2b3i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Prochlorothrix_hollandica Prochlorothrix hollandica]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2B3I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2B3I FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU1:COPPER+(I)+ION'>CU1</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU1:COPPER+(I)+ION'>CU1</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PETE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1223 Prochlorothrix hollandica])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PETE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1223 Prochlorothrix hollandica])</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Plastoquinol--plastocyanin_reductase Plastoquinol--plastocyanin reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.10.99.1 1.10.99.1] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Plastoquinol--plastocyanin_reductase Plastoquinol--plastocyanin reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.10.99.1 1.10.99.1] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2b3i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2b3i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2b3i RCSB], [http://www.ebi.ac.uk/pdbsum/2b3i PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2b3i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2b3i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2b3i RCSB], [http://www.ebi.ac.uk/pdbsum/2b3i PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/PLAS_PROHO PLAS_PROHO]] Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 34:
	[[Category: Plastoquinol--plastocyanin reductase]]		[[Category: Plastoquinol--plastocyanin reductase]]
	[[Category: Prochlorothrix hollandica]]		[[Category: Prochlorothrix hollandica]]
-	[[Category: Babu, C R.]]	+	[[Category: Babu, C R]]
-	[[Category: Bullerjahn, G S.]]	+	[[Category: Bullerjahn, G S]]
-	[[Category: Volkman, B F.]]	+	[[Category: Volkman, B F]]
	[[Category: Electron transport]]		[[Category: Electron transport]]
	[[Category: Photosynthesis]]		[[Category: Photosynthesis]]
	[[Category: Type i copper protein]]		[[Category: Type i copper protein]]

OCA at 00:32, 30 September 2014

OCA — Tue, 30 Sep 2014 00:32:53 GMT

←Older revision		Revision as of 00:32, 30 September 2014
Line 1:		Line 1:
-	[[~~Image:~~2b3i.~~png~~\|~~left~~\|200px]]	+	==NMR SOLUTION STRUCTURE OF PLASTOCYANIN FROM THE PHOTOSYNTHETIC PROKARYOTE, PROCHLOROTHRIX HOLLANDICA (19 STRUCTURES)==
		+	<StructureSection load='2b3i' size='340' side='right' caption='[[2b3i]], [[NMR_Ensembles_of_Models \| 19 NMR models]]' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2b3i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Prochlorothrix_hollandica Prochlorothrix hollandica]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2B3I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2B3I FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU1:COPPER+(I)+ION'>CU1</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">PETE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1223 Prochlorothrix hollandica])</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Plastoquinol--plastocyanin_reductase Plastoquinol--plastocyanin reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.10.99.1 1.10.99.1] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2b3i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2b3i OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2b3i RCSB], [http://www.ebi.ac.uk/pdbsum/2b3i PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/b3/2b3i_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The solution structure of a divergent plastocyanin (PC) from the photosynthetic prokaryote Prochlorothrix hollandica was determined by homonuclear 1H NMR spectroscopy. Nineteen structures were calculated from 1222 distance restraints, yielding a family of structures having an average rmsd of 0.42 +/- 0.08 A for backbone atoms and 0.71 +/- 0.07 A for heavy atoms to the mean structure. No distance constraint was violated by more than 0.26 A in the structure family. Despite the low number of conserved residues shared with other PC homologues, the overall folding pattern of P. hollandica PC is similar to other PCs, in that the protein forms a two-sheet beta-barrel tertiary structure. The greatest variability among the backbone structures is seen in the loop region from residues 47-60. The differences seen in the P. hollandica PC homologue likely arise due to a small deletion of 2-4 residues compared to the PC consensus; this yields a less extended loop containing a short alpha-helix from residues Ala52-Leu55. Additionally, the protein has an altered hydrophobic patch thought to be important in binding reaction partners. Whereas the backbone structure is very similar within the loops of the hydrophobic region, the presence of two unique residues (Tyr12 and Pro14) yields a structurally different hydrophobic surface likely important in binding P. hollandica Photosystem I.

-	~~{{STRUCTURE_2b3i\| PDB=2b3i \| SCENE= }}~~	+	NMR solution structure of plastocyanin from the photosynthetic prokaryote, Prochlorothrix hollandica.,Babu CR, Volkman BF, Bullerjahn GS Biochemistry. 1999 Apr 20;38(16):4988-95. PMID:10213601<ref>PMID:10213601</ref>

-	~~===NMR SOLUTION STRUCTURE OF PLASTOCYANIN FROM THE PHOTOSYNTHETIC PROKARYOTE~~, ~~PROCHLOROTHRIX HOLLANDICA (19 STRUCTURES)===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_10213601}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2b3i]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Prochlorothrix_hollandica Prochlorothrix hollandica]~~. ~~Full experimental information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2B3I OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:010213601<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Plastoquinol--plastocyanin reductase]]		[[Category: Plastoquinol--plastocyanin reductase]]
	[[Category: Prochlorothrix hollandica]]		[[Category: Prochlorothrix hollandica]]

OCA: Protected "2b3i" [edit=sysop:move=sysop]

OCA — Sun, 06 Jan 2013 09:55:12 GMT

Protected "2b3i" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:55, 6 January 2013

OCA at 09:55, 6 January 2013

OCA — Sun, 06 Jan 2013 09:55:08 GMT

←Older revision		Revision as of 09:55, 6 January 2013
Line 1:		Line 1:
-	{{Seed}}
	[[Image:2b3i.png\|left\|200px]]		[[Image:2b3i.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2b3i", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2b3i\| PDB=2b3i \| SCENE= }}		{{STRUCTURE_2b3i\| PDB=2b3i \| SCENE= }}

	===NMR SOLUTION STRUCTURE OF PLASTOCYANIN FROM THE PHOTOSYNTHETIC PROKARYOTE, PROCHLOROTHRIX HOLLANDICA (19 STRUCTURES)===		===NMR SOLUTION STRUCTURE OF PLASTOCYANIN FROM THE PHOTOSYNTHETIC PROKARYOTE, PROCHLOROTHRIX HOLLANDICA (19 STRUCTURES)===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_10213601}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 10213601 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_10213601}}		{{ABSTRACT_PUBMED_10213601}}

	==About this Structure==		==About this Structure==
-	~~2B3I~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Prochlorothrix_hollandica Prochlorothrix hollandica]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2B3I OCA].	+	[[2b3i]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Prochlorothrix_hollandica Prochlorothrix hollandica]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2B3I OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~10213601~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:010213601</ref><references group="xtra"/>
	[[Category: Plastoquinol--plastocyanin reductase]]		[[Category: Plastoquinol--plastocyanin reductase]]
	[[Category: Prochlorothrix hollandica]]		[[Category: Prochlorothrix hollandica]]
Line 32:		Line 20:
	[[Category: Photosynthesis]]		[[Category: Photosynthesis]]
	[[Category: Type i copper protein]]		[[Category: Type i copper protein]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 10:21:28 2009''