2bdz - Revision history

OCA at 07:37, 23 August 2023

OCA — Wed, 23 Aug 2023 07:37:25 GMT

←Older revision		Revision as of 07:37, 23 August 2023
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	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2bdz]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Jacaratia_mexicana Jacaratia mexicana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BDZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BDZ FirstGlance]. <br>		<table><tr><td colspan='2'>[[2bdz]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Jacaratia_mexicana Jacaratia mexicana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BDZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BDZ FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=E64:N~~-[N-[~~1-HYDROXYCARBOXYETHYL-CARBONYL~~]~~LEUCYLAMINO-BUTYL~~]~~-GUANIDINE'>E64</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max~~-~~height: 3em;'>~~[[~~1yal\|1yal]], [[1gec\|1gec]], [[1ppo\|1ppo]], [[1meg\|1meg]], [[1pci\|1pci~~]]</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=E64:N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE'>E64</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bdz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bdz OCA], [https://pdbe.org/2bdz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bdz RCSB], [https://www.ebi.ac.uk/pdbsum/2bdz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bdz ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bdz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bdz OCA], [https://pdbe.org/2bdz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bdz RCSB], [https://www.ebi.ac.uk/pdbsum/2bdz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bdz ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/MEX1_JACME MEX1_JACME]] Cysteine protease.[REFERENCE:1]	+	[https://www.uniprot.org/uniprot/MEX1_JACME MEX1_JACME] Cysteine protease.[REFERENCE:1]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 20:		Line 20:
	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2bdz ConSurf].		</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2bdz ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
-	<div style="background-color:#fffaf0;">
-	== Publication Abstract from PubMed ==
-	Mexicain is a 23.7 kDa papain-like cysteine protease from the tropical plant Jacaratia mexicana. Extracted as a mix of proteases from the latex of the fruit, mexicain is isolated after cation-exchange chromatography as the most abundant product. The purified product inhibited with E-64 was crystallized by sitting-drop vapour diffusion in the presence of ethanolamine. Cryoprotected crystals diffracted X-rays from a home source to 1.98 A and belong to the monoclinic space group P2(1), with unit-cell parameters a = 57.36, b = 90.45, c = 80.39 A, beta = 92.64 degrees . The asymmetric unit contains four molecules of mexicain, with a corresponding crystal volume per protein weight (V(M)) of 2.24 A(3) Da(-1) and a solvent content of 45% by volume. A molecular-replacement model has been determined and refinement is in progress.
-
-	Purification, crystallization and preliminary X-ray analysis of mexicain.,Oliver-Salvador MC, Gonzalez-Ramirez LA, Gavira JA, Soriano-Garcia M, Garcia-Ruiz JM Acta Crystallogr D Biol Crystallogr. 2004 Nov;60(Pt 11):2058-60. Epub 2004, Oct 20. PMID:15502326<ref>PMID:15502326</ref>
-
-	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	</div>
-	<div class="pdbe-citations 2bdz" style="background-color:#fffaf0;"></div>
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Jacaratia mexicana]]		[[Category: Jacaratia mexicana]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Garcia-Ruiz~~, J M~~]]	+	[[Category: Garcia-Ruiz JM]]
-	[[Category: Gavira~~, J A~~]]	+	[[Category: Gavira JA]]
-	[[Category: Gonzalez-Ramirez~~, L A~~]]	+	[[Category: Gonzalez-Ramirez LA]]
-	[[Category: Oliver-Salvador~~, M C~~]]	+	[[Category: Oliver-Salvador MC]]
-	[[Category: Soriano-Garcia, M]]	+	[[Category: Soriano-Garcia M]]
-	~~[[Category: Cysteine protease]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Mexicain]]~~	+
-	~~[[Category: Papain-like]]~~	+
-	~~[[Category: Peptidase_c1~~]]	+

OCA at 09:44, 5 May 2021

OCA — Wed, 05 May 2021 09:44:06 GMT

←Older revision		Revision as of 09:44, 5 May 2021
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	<StructureSection load='2bdz' size='340' side='right'caption='[[2bdz]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2bdz' size='340' side='right'caption='[[2bdz]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2bdz]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Jacaratia_mexicana Jacaratia mexicana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BDZ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2BDZ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2bdz]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Jacaratia_mexicana Jacaratia mexicana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BDZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BDZ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=E64:N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE'>E64</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=E64:N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE'>E64</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yal\|1yal]], [[1gec\|1gec]], [[1ppo\|1ppo]], [[1meg\|1meg]], [[1pci\|1pci]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1yal\|1yal]], [[1gec\|1gec]], [[1ppo\|1ppo]], [[1meg\|1meg]], [[1pci\|1pci]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2bdz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bdz OCA], [~~http~~://pdbe.org/2bdz PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2bdz RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2bdz PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2bdz ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bdz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bdz OCA], [https://pdbe.org/2bdz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bdz RCSB], [https://www.ebi.ac.uk/pdbsum/2bdz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bdz ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/MEX1_JACME MEX1_JACME]] Cysteine protease.[REFERENCE:1]	+	[[https://www.uniprot.org/uniprot/MEX1_JACME MEX1_JACME]] Cysteine protease.[REFERENCE:1]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 07:11, 24 July 2019

OCA — Wed, 24 Jul 2019 07:11:32 GMT

←Older revision		Revision as of 07:11, 24 July 2019
Line 1:		Line 1:

	==Mexicain from Jacaratia mexicana==		==Mexicain from Jacaratia mexicana==
-	<StructureSection load='2bdz' size='340' side='right' caption='[[2bdz]], [[Resolution\|resolution]] 2.10Å' scene=''>	+	<StructureSection load='2bdz' size='340' side='right'caption='[[2bdz]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2bdz]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Jacaratia_mexicana Jacaratia mexicana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BDZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BDZ FirstGlance]. <br>		<table><tr><td colspan='2'>[[2bdz]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Jacaratia_mexicana Jacaratia mexicana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BDZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BDZ FirstGlance]. <br>
Line 34:		Line 34:
	</StructureSection>		</StructureSection>
	[[Category: Jacaratia mexicana]]		[[Category: Jacaratia mexicana]]
		+	[[Category: Large Structures]]
	[[Category: Garcia-Ruiz, J M]]		[[Category: Garcia-Ruiz, J M]]
	[[Category: Gavira, J A]]		[[Category: Gavira, J A]]

OCA at 06:35, 16 May 2018

OCA — Wed, 16 May 2018 06:35:32 GMT

←Older revision		Revision as of 06:35, 16 May 2018
Line 1:		Line 1:
		+
	==Mexicain from Jacaratia mexicana==		==Mexicain from Jacaratia mexicana==
	<StructureSection load='2bdz' size='340' side='right' caption='[[2bdz]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2bdz' size='340' side='right' caption='[[2bdz]], [[Resolution\|resolution]] 2.10Å' scene=''>
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=E64:N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE'>E64</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=E64:N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE'>E64</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yal\|1yal]], [[1gec\|1gec]], [[1ppo\|1ppo]], [[1meg\|1meg]], [[1pci\|1pci]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yal\|1yal]], [[1gec\|1gec]], [[1ppo\|1ppo]], [[1meg\|1meg]], [[1pci\|1pci]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bdz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bdz OCA], [http://pdbe.org/2bdz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2bdz RCSB], [http://www.ebi.ac.uk/pdbsum/2bdz PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bdz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bdz OCA], [http://pdbe.org/2bdz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2bdz RCSB], [http://www.ebi.ac.uk/pdbsum/2bdz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2bdz ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bd/2bdz_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bd/2bdz_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 04:27, 8 February 2016

OCA — Mon, 08 Feb 2016 04:27:38 GMT

←Older revision		Revision as of 04:27, 8 February 2016
Line 17:		Line 17:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2bdz ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 07:51, 10 September 2015

OCA — Thu, 10 Sep 2015 07:51:54 GMT

←Older revision		Revision as of 07:51, 10 September 2015
Line 5:		Line 5:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=E64:N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE'>E64</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=E64:N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE'>E64</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yal\|1yal]], [[1gec\|1gec]], [[1ppo\|1ppo]], [[1meg\|1meg]], [[1pci\|1pci]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yal\|1yal]], [[1gec\|1gec]], [[1ppo\|1ppo]], [[1meg\|1meg]], [[1pci\|1pci]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bdz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bdz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2bdz RCSB], [http://www.ebi.ac.uk/pdbsum/2bdz PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bdz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bdz OCA], [http://pdbe.org/2bdz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2bdz RCSB], [http://www.ebi.ac.uk/pdbsum/2bdz PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2bdz" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 20:36, 24 December 2014

OCA — Wed, 24 Dec 2014 20:36:49 GMT

←Older revision		Revision as of 20:36, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2bdz]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Jacaratia_mexicana Jacaratia mexicana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BDZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BDZ FirstGlance]. <br>		<table><tr><td colspan='2'>[[2bdz]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Jacaratia_mexicana Jacaratia mexicana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BDZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BDZ FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=E64:N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE'>E64</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=E64:N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE'>E64</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yal\|1yal]], [[1gec\|1gec]], [[1ppo\|1ppo]], [[1meg\|1meg]], [[1pci\|1pci]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yal\|1yal]], [[1gec\|1gec]], [[1ppo\|1ppo]], [[1meg\|1meg]], [[1pci\|1pci]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bdz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bdz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2bdz RCSB], [http://www.ebi.ac.uk/pdbsum/2bdz PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bdz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bdz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2bdz RCSB], [http://www.ebi.ac.uk/pdbsum/2bdz PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/MEX1_JACME MEX1_JACME]] Cysteine protease.[REFERENCE:1]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Jacaratia mexicana]]		[[Category: Jacaratia mexicana]]
-	[[Category: Garcia-Ruiz, J M.]]	+	[[Category: Garcia-Ruiz, J M]]
-	[[Category: Gavira, J A.]]	+	[[Category: Gavira, J A]]
-	[[Category: Gonzalez-Ramirez, L A.]]	+	[[Category: Gonzalez-Ramirez, L A]]
-	[[Category: Oliver-Salvador, M C.]]	+	[[Category: Oliver-Salvador, M C]]
-	[[Category: Soriano-Garcia, M.]]	+	[[Category: Soriano-Garcia, M]]
	[[Category: Cysteine protease]]		[[Category: Cysteine protease]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 01:07, 30 September 2014

OCA — Tue, 30 Sep 2014 01:07:07 GMT

←Older revision		Revision as of 01:07, 30 September 2014
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-	[[~~Image:~~2bdz.~~png~~\|~~left~~\|200px]]	+	==Mexicain from Jacaratia mexicana==
		+	<StructureSection load='2bdz' size='340' side='right' caption='[[2bdz]], [[Resolution\|resolution]] 2.10Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2bdz]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Jacaratia_mexicana Jacaratia mexicana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BDZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BDZ FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=E64:N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE'>E64</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1yal\|1yal]], [[1gec\|1gec]], [[1ppo\|1ppo]], [[1meg\|1meg]], [[1pci\|1pci]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bdz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bdz OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2bdz RCSB], [http://www.ebi.ac.uk/pdbsum/2bdz PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bd/2bdz_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Mexicain is a 23.7 kDa papain-like cysteine protease from the tropical plant Jacaratia mexicana. Extracted as a mix of proteases from the latex of the fruit, mexicain is isolated after cation-exchange chromatography as the most abundant product. The purified product inhibited with E-64 was crystallized by sitting-drop vapour diffusion in the presence of ethanolamine. Cryoprotected crystals diffracted X-rays from a home source to 1.98 A and belong to the monoclinic space group P2(1), with unit-cell parameters a = 57.36, b = 90.45, c = 80.39 A, beta = 92.64 degrees . The asymmetric unit contains four molecules of mexicain, with a corresponding crystal volume per protein weight (V(M)) of 2.24 A(3) Da(-1) and a solvent content of 45% by volume. A molecular-replacement model has been determined and refinement is in progress.

-	~~{{STRUCTURE_2bdz\| PDB=2bdz \| SCENE= }}~~	+	Purification, crystallization and preliminary X-ray analysis of mexicain.,Oliver-Salvador MC, Gonzalez-Ramirez LA, Gavira JA, Soriano-Garcia M, Garcia-Ruiz JM Acta Crystallogr D Biol Crystallogr. 2004 Nov;60(Pt 11):2058-60. Epub 2004, Oct 20. PMID:15502326<ref>PMID:15502326</ref>

-	~~===Mexicain from Jacaratia mexicana===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_15502326}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2bdz]] is~~ a ~~4 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Jacaratia_mexicana Jacaratia mexicana]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2BDZ OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:015502326<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Jacaratia mexicana]]		[[Category: Jacaratia mexicana]]
	[[Category: Garcia-Ruiz, J M.]]		[[Category: Garcia-Ruiz, J M.]]

OCA at 12:12, 23 January 2013

OCA — Wed, 23 Jan 2013 12:12:43 GMT

←Older revision		Revision as of 12:12, 23 January 2013
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	[[Image:2bdz.png\|left\|200px]]		[[Image:2bdz.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2bdz", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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	{{STRUCTURE_2bdz\| PDB=2bdz \| SCENE= }}		{{STRUCTURE_2bdz\| PDB=2bdz \| SCENE= }}

	===Mexicain from Jacaratia mexicana===		===Mexicain from Jacaratia mexicana===

		+	{{ABSTRACT_PUBMED_15502326}}

	==About this Structure==		==About this Structure==
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	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15502326~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015502326</ref><references group="xtra"/>
	[[Category: Jacaratia mexicana]]		[[Category: Jacaratia mexicana]]
	[[Category: Garcia-Ruiz, J M.]]		[[Category: Garcia-Ruiz, J M.]]
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	[[Category: Oliver-Salvador, M C.]]		[[Category: Oliver-Salvador, M C.]]
	[[Category: Soriano-Garcia, M.]]		[[Category: Soriano-Garcia, M.]]
		+	[[Category: Cysteine protease]]
		+	[[Category: Hydrolase]]
		+	[[Category: Mexicain]]
		+	[[Category: Papain-like]]
		+	[[Category: Peptidase_c1]]

OCA: Protected "2bdz" [edit=sysop:move=sysop]

OCA — Wed, 09 Mar 2011 05:44:24 GMT

Protected "2bdz" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:44, 9 March 2011