2bgj - Revision history

OCA at 09:15, 9 May 2024

OCA — Thu, 09 May 2024 09:15:34 GMT

←Older revision		Revision as of 09:15, 9 May 2024
Line 3:		Line 3:
	<StructureSection load='2bgj' size='340' side='right'caption='[[2bgj]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2bgj' size='340' side='right'caption='[[2bgj]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2bgj]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"rhodonostoc_capsulatum"_molisch_1907 "rhodonostoc capsulatum" molisch 1907~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BGJ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2BGJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2bgj]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodobacter_capsulatus Rhodobacter capsulatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BGJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BGJ FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=FAD:FLAVIN~~-~~ADENINE+DINUCLEOTIDE'>FAD</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.1Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~>[[2bgi\|2bgi]]</td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr>
-	~~<tr~~ id~~='activity'><td class~~="~~sblockLbl~~"><~~b>Activity:</b></td><td class~~=~~"sblockDat"><span class~~=~~'plainlinks'>[http~~:~~//en.wikipedia.org/wiki/Ferredoxin~~-~~-NADP(~~+~~)_reductase Ferredoxin--NADP(+) reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.18.1.2 1.18.1.2]~~ </~~span~~></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bgj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bgj OCA], [https://pdbe.org/2bgj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bgj RCSB], [https://www.ebi.ac.uk/pdbsum/2bgj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bgj ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2bgj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bgj OCA], [~~http~~://pdbe.org/2bgj PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2bgj RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2bgj PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2bgj ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/FENR_RHOCA FENR_RHOCA] Transports electrons between flavodoxin or ferredoxin and NADPH.<ref>PMID:14572660</ref> <ref>PMID:16128574</ref> <ref>PMID:24016470</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Rhodonostoc capsulatum molisch 1907]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Bittel, C]]
-	[[Category: Carrillo, N]]
-	[[Category: Cortez, N]]
-	[[Category: Frago, S]]
-	[[Category: Gomez-Moreno, C]]
-	[[Category: Hermoso, J A]]
-	[[Category: Mayhew, S G]]
-	[[Category: Medina, M]]
-	[[Category: Nogues, I]]
-	[[Category: Perez-Dorado, J I]]
-	[[Category: Electron transfer]]
-	[[Category: Flavoprotein]]
-	[[Category: Oxidoreductase]]
	[[Category: Rhodobacter capsulatus]]		[[Category: Rhodobacter capsulatus]]
		+	[[Category: Bittel C]]
		+	[[Category: Carrillo N]]
		+	[[Category: Cortez N]]
		+	[[Category: Frago S]]
		+	[[Category: Gomez-Moreno C]]
		+	[[Category: Hermoso JA]]
		+	[[Category: Mayhew SG]]
		+	[[Category: Medina M]]
		+	[[Category: Nogues I]]
		+	[[Category: Perez-Dorado JI]]

OCA at 08:53, 21 October 2020

OCA — Wed, 21 Oct 2020 08:53:52 GMT

←Older revision		Revision as of 08:53, 21 October 2020
Line 1:		Line 1:

	==X-Ray Structure of the Ferredoxin-NADP(H) Reductase from Rhodobacter capsulatus at 2.1 Angstroms==		==X-Ray Structure of the Ferredoxin-NADP(H) Reductase from Rhodobacter capsulatus at 2.1 Angstroms==
-	<StructureSection load='2bgj' size='340' side='right' caption='[[2bgj]], [[Resolution\|resolution]] 2.10Å' scene=''>	+	<StructureSection load='2bgj' size='340' side='right'caption='[[2bgj]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2bgj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"rhodonostoc_capsulatum"_molisch_1907 "rhodonostoc capsulatum" molisch 1907]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BGJ OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2BGJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2bgj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"rhodonostoc_capsulatum"_molisch_1907 "rhodonostoc capsulatum" molisch 1907]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BGJ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2BGJ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2bgi\|2bgi]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2bgi\|2bgi]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferredoxin--NADP(+)_reductase Ferredoxin--NADP(+) reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.18.1.2 1.18.1.2] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferredoxin--NADP(+)_reductase Ferredoxin--NADP(+) reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.18.1.2 1.18.1.2] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2bgj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bgj OCA], [http://pdbe.org/2bgj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2bgj RCSB], [http://www.ebi.ac.uk/pdbsum/2bgj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2bgj ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2bgj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bgj OCA], [http://pdbe.org/2bgj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2bgj RCSB], [http://www.ebi.ac.uk/pdbsum/2bgj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2bgj ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 33:		Line 33:
	</StructureSection>		</StructureSection>
	[[Category: Rhodonostoc capsulatum molisch 1907]]		[[Category: Rhodonostoc capsulatum molisch 1907]]
		+	[[Category: Large Structures]]
	[[Category: Bittel, C]]		[[Category: Bittel, C]]
	[[Category: Carrillo, N]]		[[Category: Carrillo, N]]

OCA at 06:41, 16 May 2018

OCA — Wed, 16 May 2018 06:41:08 GMT

←Older revision		Revision as of 06:41, 16 May 2018
Line 1:		Line 1:
-	==X-~~RAY STRUCTURE OF THE FERREDOXIN~~-NADP(H) ~~REDUCTASE FROM RHODOBACTER CAPSULATUS AT~~ 2.1 ~~ANGSTROMS~~==	+
		+	==X-Ray Structure of the Ferredoxin-NADP(H) Reductase from Rhodobacter capsulatus at 2.1 Angstroms==
	<StructureSection load='2bgj' size='340' side='right' caption='[[2bgj]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2bgj' size='340' side='right' caption='[[2bgj]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2bgi\|2bgi]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2bgi\|2bgi]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferredoxin--NADP(+)_reductase Ferredoxin--NADP(+) reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.18.1.2 1.18.1.2] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferredoxin--NADP(+)_reductase Ferredoxin--NADP(+) reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.18.1.2 1.18.1.2] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bgj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bgj OCA], [http://pdbe.org/2bgj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2bgj RCSB], [http://www.ebi.ac.uk/pdbsum/2bgj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bgj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bgj OCA], [http://pdbe.org/2bgj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2bgj RCSB], [http://www.ebi.ac.uk/pdbsum/2bgj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2bgj ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 12:		Line 13:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bg/2bgj_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bg/2bgj_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 18:48, 8 February 2016

OCA — Mon, 08 Feb 2016 18:48:21 GMT

←Older revision		Revision as of 18:48, 8 February 2016
Line 16:		Line 16:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2bgj ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 14:23, 10 September 2015

OCA — Thu, 10 Sep 2015 14:23:53 GMT

←Older revision		Revision as of 14:23, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='2bgj' size='340' side='right' caption='[[2bgj]], [[Resolution\|resolution]] 2.10Å' scene=''>		<StructureSection load='2bgj' size='340' side='right' caption='[[2bgj]], [[Resolution\|resolution]] 2.10Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2bgj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Rhodobacter_capsulatus Rhodobacter capsulatus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BGJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BGJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2bgj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"rhodonostoc_capsulatum"_molisch_1907 "rhodonostoc capsulatum" molisch 1907]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BGJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BGJ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2bgi\|2bgi]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2bgi\|2bgi]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferredoxin--NADP(+)_reductase Ferredoxin--NADP(+) reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.18.1.2 1.18.1.2] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferredoxin--NADP(+)_reductase Ferredoxin--NADP(+) reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.18.1.2 1.18.1.2] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bgj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bgj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2bgj RCSB], [http://www.ebi.ac.uk/pdbsum/2bgj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bgj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bgj OCA], [http://pdbe.org/2bgj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2bgj RCSB], [http://www.ebi.ac.uk/pdbsum/2bgj PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 26:		Line 26:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2bgj" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Rhodobacter capsulatus~~]]	+	[[Category: Rhodonostoc capsulatum molisch 1907]]
	[[Category: Bittel, C]]		[[Category: Bittel, C]]
	[[Category: Carrillo, N]]		[[Category: Carrillo, N]]
Line 44:		Line 45:
	[[Category: Flavoprotein]]		[[Category: Flavoprotein]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
		+	[[Category: Rhodobacter capsulatus]]

OCA at 10:27, 8 January 2015

OCA — Thu, 08 Jan 2015 10:27:44 GMT

←Older revision		Revision as of 10:27, 8 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2bgj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_capsulatus Rhodobacter capsulatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BGJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BGJ FirstGlance]. <br>		<table><tr><td colspan='2'>[[2bgj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_capsulatus Rhodobacter capsulatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BGJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BGJ FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2bgi\|2bgi]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2bgi\|2bgi]]</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferredoxin--NADP(+)_reductase Ferredoxin--NADP(+) reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.18.1.2 1.18.1.2] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferredoxin--NADP(+)_reductase Ferredoxin--NADP(+) reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.18.1.2 1.18.1.2] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bgj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bgj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2bgj RCSB], [http://www.ebi.ac.uk/pdbsum/2bgj PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bgj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bgj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2bgj RCSB], [http://www.ebi.ac.uk/pdbsum/2bgj PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 31:		Line 31:
	</StructureSection>		</StructureSection>
	[[Category: Rhodobacter capsulatus]]		[[Category: Rhodobacter capsulatus]]
-	[[Category: Bittel, C.]]	+	[[Category: Bittel, C]]
-	[[Category: Carrillo, N.]]	+	[[Category: Carrillo, N]]
-	[[Category: Cortez, N.]]	+	[[Category: Cortez, N]]
-	[[Category: Frago, S.]]	+	[[Category: Frago, S]]
-	[[Category: Gomez-Moreno, C.]]	+	[[Category: Gomez-Moreno, C]]
-	[[Category: Hermoso, J A.]]	+	[[Category: Hermoso, J A]]
-	[[Category: Mayhew, S G.]]	+	[[Category: Mayhew, S G]]
-	[[Category: Medina, M.]]	+	[[Category: Medina, M]]
-	[[Category: Nogues, I.]]	+	[[Category: Nogues, I]]
-	[[Category: Perez-Dorado, J I.]]	+	[[Category: Perez-Dorado, J I]]
	[[Category: Electron transfer]]		[[Category: Electron transfer]]
	[[Category: Flavoprotein]]		[[Category: Flavoprotein]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
-	[[Category: Rhodobacter capsulatus]]

OCA at 01:13, 30 September 2014

OCA — Tue, 30 Sep 2014 01:13:03 GMT

←Older revision		Revision as of 01:13, 30 September 2014
Line 1:		Line 1:
-	[[~~Image:~~2bgj.~~png~~\|~~left~~\|200px]]	+	==X-RAY STRUCTURE OF THE FERREDOXIN-NADP(H) REDUCTASE FROM RHODOBACTER CAPSULATUS AT 2.1 ANGSTROMS==
		+	<StructureSection load='2bgj' size='340' side='right' caption='[[2bgj]], [[Resolution\|resolution]] 2.10Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2bgj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_capsulatus Rhodobacter capsulatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BGJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BGJ FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2bgi\|2bgi]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferredoxin--NADP(+)_reductase Ferredoxin--NADP(+) reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.18.1.2 1.18.1.2] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bgj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bgj OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2bgj RCSB], [http://www.ebi.ac.uk/pdbsum/2bgj PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bg/2bgj_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The photosynthetic bacterium Rhodobacter capsulatus contains a ferredoxin (flavodoxin)-NADP(H) oxidoreductase (FPR) that catalyzes electron transfer between NADP(H) and ferredoxin or flavodoxin. The structure of the enzyme, determined by X-ray crystallography, contains two domains harboring the FAD and NADP(H) binding sites, as is typical of the FPR structural family. The FAD molecule is in a hairpin conformation in which stacking interactions can be established between the dimethylisoalloxazine and adenine moieties. The midpoint redox potentials of the various transitions undergone by R. capsulatus FPR were similar to those reported for their counterparts involved in oxygenic photosynthesis, but its catalytic activity is orders of magnitude lower (1-2 s(-)(1) versus 200-500 s(-)(1)) as is true for most of its prokaryotic homologues. To identify the mechanistic basis for the slow turnover in the bacterial enzymes, we dissected the R. capsulatus FPR reaction into hydride transfer and electron transfer steps, and determined their rates using stopped-flow methods. Hydride exchange between the enzyme and NADP(H) occurred at 30-150 s(-)(1), indicating that this half-reaction does not limit FPR activity. In contrast, electron transfer to flavodoxin proceeds at 2.7 s(-)(1), in the range of steady-state catalysis. Flavodoxin semiquinone was a better electron acceptor for FPR than oxidized flavodoxin under both single turnover and steady-state conditions. The results indicate that one-electron reduction of oxidized flavodoxin limits the enzyme activity in vitro, and support the notion that flavodoxin oscillates between the semiquinone and fully reduced states when FPR operates in vivo.

-	~~{{STRUCTURE_2bgj\| PDB=2bgj \| SCENE= }}~~	+	The ferredoxin-NADP(H) reductase from Rhodobacter capsulatus: molecular structure and catalytic mechanism.,Nogues I, Perez-Dorado I, Frago S, Bittel C, Mayhew SG, Gomez-Moreno C, Hermoso JA, Medina M, Cortez N, Carrillo N Biochemistry. 2005 Sep 6;44(35):11730-40. PMID:16128574<ref>PMID:16128574</ref>

-	~~===X-RAY STRUCTURE OF THE FERREDOXIN-NADP(H) REDUCTASE FROM RHODOBACTER CAPSULATUS AT 2.1 ANGSTROMS===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_16128574}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2bgj]] is~~ a ~~4 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Rhodobacter_capsulatus Rhodobacter capsulatus]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2BGJ OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:016128574<~~/~~ref~~><~~ref group="xtra">PMID:015583382</ref><ref group="xtra">PMID:014572660</ref><references group="xtra"~~/>	+
	[[Category: Rhodobacter capsulatus]]		[[Category: Rhodobacter capsulatus]]
	[[Category: Bittel, C.]]		[[Category: Bittel, C.]]

OCA at 12:19, 23 January 2013

OCA — Wed, 23 Jan 2013 12:19:39 GMT

←Older revision		Revision as of 12:19, 23 January 2013
Line 1:		Line 1:
	[[Image:2bgj.png\|left\|200px]]		[[Image:2bgj.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2bgj", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2bgj\| PDB=2bgj \| SCENE= }}		{{STRUCTURE_2bgj\| PDB=2bgj \| SCENE= }}

	===X-RAY STRUCTURE OF THE FERREDOXIN-NADP(H) REDUCTASE FROM RHODOBACTER CAPSULATUS AT 2.1 ANGSTROMS===		===X-RAY STRUCTURE OF THE FERREDOXIN-NADP(H) REDUCTASE FROM RHODOBACTER CAPSULATUS AT 2.1 ANGSTROMS===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_16128574}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 16128574 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_16128574}}		{{ABSTRACT_PUBMED_16128574}}

Line 22:		Line 11:

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~16128574~~</ref><ref group="xtra">PMID:~~15583382~~</ref><ref group="xtra">PMID:~~14572660~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:016128574</ref><ref group="xtra">PMID:015583382</ref><ref group="xtra">PMID:014572660</ref><references group="xtra"/>
	[[Category: Rhodobacter capsulatus]]		[[Category: Rhodobacter capsulatus]]
	[[Category: Bittel, C.]]		[[Category: Bittel, C.]]

OCA: Protected "2bgj" [edit=sysop:move=sysop]

OCA — Mon, 14 Mar 2011 20:39:39 GMT

Protected "2bgj" [edit=sysop:move=sysop]

←Older revision

Revision as of 20:39, 14 March 2011

OCA at 20:39, 14 March 2011

OCA — Mon, 14 Mar 2011 20:39:37 GMT

←Older revision		Revision as of 20:39, 14 March 2011
Line 1:		Line 1:
-	{{Seed}}
	[[Image:2bgj.png\|left\|200px]]		[[Image:2bgj.png\|left\|200px]]

Line 20:		Line 19:

	==About this Structure==		==About this Structure==
-	~~2BGJ~~ is a 4 ~~chains~~ structure ~~of sequences~~ from [http://en.wikipedia.org/wiki/Rhodobacter_capsulatus Rhodobacter capsulatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BGJ OCA].	+	[[2bgj]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhodobacter_capsulatus Rhodobacter capsulatus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BGJ OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:16128574</ref><references group="xtra"/>	+	<ref group="xtra">PMID:16128574</ref><ref group="xtra">PMID:15583382</ref><ref group="xtra">PMID:14572660</ref><references group="xtra"/>
	[[Category: Rhodobacter capsulatus]]		[[Category: Rhodobacter capsulatus]]
	[[Category: Bittel, C.]]		[[Category: Bittel, C.]]
Line 39:		Line 38:
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]
	[[Category: Rhodobacter capsulatus]]		[[Category: Rhodobacter capsulatus]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Feb 17 01:53:11 2009''