2bpb - Revision history

OCA at 11:22, 22 May 2024

OCA — Wed, 22 May 2024 11:22:58 GMT

←Older revision		Revision as of 11:22, 22 May 2024
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	<StructureSection load='2bpb' size='340' side='right'caption='[[2bpb]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='2bpb' size='340' side='right'caption='[[2bpb]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2bpb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Atcc_8093 Atcc 8093~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BPB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BPB FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2bpb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Starkeya_novella Starkeya novella]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BPB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BPB FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MSS:(MOLYBDOPTERIN~~-S,~~S)-OXO-MOLYBDENUM'>MSS</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.9Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height~~: ~~3em;~~'>~~[[2blf\|2blf]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MSS:(MOLYBDOPTERIN-S,S)-OXO-MOLYBDENUM'>MSS</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bpb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bpb OCA], [https://pdbe.org/2bpb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bpb RCSB], [https://www.ebi.ac.uk/pdbsum/2bpb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bpb ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bpb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bpb OCA], [https://pdbe.org/2bpb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bpb RCSB], [https://www.ebi.ac.uk/pdbsum/2bpb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bpb ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/Q9LA16_STANO Q9LA16_STANO]] The exact function is not known. Can catalyze the reduction of a variety of substrates like dimethyl sulfoxide, trimethylamine N-oxide, phenylmethyl sulfoxide and L-methionine sulfoxide. Cannot reduce cyclic N-oxides. Shows no activity as sulfite oxidase.[SAAS:SAAS00086612] The exact function is not known. Can catalyze the reduction of a variety of substrates like dimethyl sulfoxide, trimethylamine N-oxide, phenylmethyl sulfoxide and L-methionine sulfoxide. Cannot reduce cyclic N-oxides. Shows no activity as sulfite oxidase (By similarity).	+	[https://www.uniprot.org/uniprot/Q9LA16_STANO Q9LA16_STANO] The exact function is not known. Can catalyze the reduction of a variety of substrates like dimethyl sulfoxide, trimethylamine N-oxide, phenylmethyl sulfoxide and L-methionine sulfoxide. Cannot reduce cyclic N-oxides. Shows no activity as sulfite oxidase.[SAAS:SAAS00086612] The exact function is not known. Can catalyze the reduction of a variety of substrates like dimethyl sulfoxide, trimethylamine N-oxide, phenylmethyl sulfoxide and L-methionine sulfoxide. Cannot reduce cyclic N-oxides. Shows no activity as sulfite oxidase (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 33:		Line 33:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Atcc 8093]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Bailey, S~~]]	+	[[Category: Starkeya novella]]
-	[[Category: ~~Kappler, U~~]]	+	[[Category: Bailey S]]
-	[[Category: ~~C-type cytochrome]]~~	+	[[Category: Kappler U]]
-	~~[[Category: Electron transport]]~~	+
-	~~[[Category: Heme]]~~	+
-	~~[[Category: Molybdopterin]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: Sulfite oxidase~~]]	+

OCA at 13:15, 24 November 2021

OCA — Wed, 24 Nov 2021 13:15:27 GMT

←Older revision		Revision as of 13:15, 24 November 2021
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	<StructureSection load='2bpb' size='340' side='right'caption='[[2bpb]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='2bpb' size='340' side='right'caption='[[2bpb]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2bpb]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Atcc_8093 Atcc 8093]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BPB OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2BPB FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2bpb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_8093 Atcc 8093]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BPB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BPB FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MSS:(MOLYBDOPTERIN-S,S)-OXO-MOLYBDENUM'>MSS</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MSS:(MOLYBDOPTERIN-S,S)-OXO-MOLYBDENUM'>MSS</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2blf\|2blf]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2blf\|2blf]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2bpb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bpb OCA], [~~http~~://pdbe.org/2bpb PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2bpb RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2bpb PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2bpb ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bpb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bpb OCA], [https://pdbe.org/2bpb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bpb RCSB], [https://www.ebi.ac.uk/pdbsum/2bpb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bpb ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/Q9LA16_STANO Q9LA16_STANO]] The exact function is not known. Can catalyze the reduction of a variety of substrates like dimethyl sulfoxide, trimethylamine N-oxide, phenylmethyl sulfoxide and L-methionine sulfoxide. Cannot reduce cyclic N-oxides. Shows no activity as sulfite oxidase.[SAAS:SAAS00086612] The exact function is not known. Can catalyze the reduction of a variety of substrates like dimethyl sulfoxide, trimethylamine N-oxide, phenylmethyl sulfoxide and L-methionine sulfoxide. Cannot reduce cyclic N-oxides. Shows no activity as sulfite oxidase (By similarity).	+	[[https://www.uniprot.org/uniprot/Q9LA16_STANO Q9LA16_STANO]] The exact function is not known. Can catalyze the reduction of a variety of substrates like dimethyl sulfoxide, trimethylamine N-oxide, phenylmethyl sulfoxide and L-methionine sulfoxide. Cannot reduce cyclic N-oxides. Shows no activity as sulfite oxidase.[SAAS:SAAS00086612] The exact function is not known. Can catalyze the reduction of a variety of substrates like dimethyl sulfoxide, trimethylamine N-oxide, phenylmethyl sulfoxide and L-methionine sulfoxide. Cannot reduce cyclic N-oxides. Shows no activity as sulfite oxidase (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 08:20, 19 February 2020

OCA — Wed, 19 Feb 2020 08:20:12 GMT

←Older revision		Revision as of 08:20, 19 February 2020
Line 1:		Line 1:

	==Sulfite dehydrogenase from Starkeya Novella==		==Sulfite dehydrogenase from Starkeya Novella==
-	<StructureSection load='2bpb' size='340' side='right' caption='[[2bpb]], [[Resolution\|resolution]] 1.90Å' scene=''>	+	<StructureSection load='2bpb' size='340' side='right'caption='[[2bpb]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2bpb]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_8093 Atcc 8093]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BPB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BPB FirstGlance]. <br>		<table><tr><td colspan='2'>[[2bpb]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_8093 Atcc 8093]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BPB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BPB FirstGlance]. <br>
Line 34:		Line 34:
	</StructureSection>		</StructureSection>
	[[Category: Atcc 8093]]		[[Category: Atcc 8093]]
		+	[[Category: Large Structures]]
	[[Category: Bailey, S]]		[[Category: Bailey, S]]
	[[Category: Kappler, U]]		[[Category: Kappler, U]]

OCA at 06:53, 16 May 2018

OCA — Wed, 16 May 2018 06:53:05 GMT

←Older revision		Revision as of 06:53, 16 May 2018
Line 1:		Line 1:
-	==~~SULFITE DEHYDROGENASE FROM STARKEYA NOVELLA~~==	+
		+	==Sulfite dehydrogenase from Starkeya Novella==
	<StructureSection load='2bpb' size='340' side='right' caption='[[2bpb]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='2bpb' size='340' side='right' caption='[[2bpb]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MSS:(MOLYBDOPTERIN-S,S)-OXO-MOLYBDENUM'>MSS</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MSS:(MOLYBDOPTERIN-S,S)-OXO-MOLYBDENUM'>MSS</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2blf\|2blf]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2blf\|2blf]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bpb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bpb OCA], [http://pdbe.org/2bpb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2bpb RCSB], [http://www.ebi.ac.uk/pdbsum/2bpb PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bpb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bpb OCA], [http://pdbe.org/2bpb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2bpb RCSB], [http://www.ebi.ac.uk/pdbsum/2bpb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2bpb ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bp/2bpb_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bp/2bpb_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 23:00, 9 February 2016

OCA — Tue, 09 Feb 2016 23:00:09 GMT

←Older revision		Revision as of 23:00, 9 February 2016
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	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2bpb ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 02:54, 11 September 2015

OCA — Fri, 11 Sep 2015 02:54:37 GMT

←Older revision		Revision as of 02:54, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='2bpb' size='340' side='right' caption='[[2bpb]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='2bpb' size='340' side='right' caption='[[2bpb]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2bpb]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Starkeya_novella Starkeya novella~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BPB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BPB FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2bpb]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_8093 Atcc 8093]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BPB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BPB FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MSS:(MOLYBDOPTERIN-S,S)-OXO-MOLYBDENUM'>MSS</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MSS:(MOLYBDOPTERIN-S,S)-OXO-MOLYBDENUM'>MSS</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2blf\|2blf]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2blf\|2blf]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bpb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bpb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2bpb RCSB], [http://www.ebi.ac.uk/pdbsum/2bpb PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bpb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bpb OCA], [http://pdbe.org/2bpb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2bpb RCSB], [http://www.ebi.ac.uk/pdbsum/2bpb PDBsum]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/Q9LA16_STANO Q9LA16_STANO]] The exact function is not known. Can catalyze the reduction of a variety of substrates like dimethyl sulfoxide, trimethylamine N-oxide, phenylmethyl sulfoxide and L-methionine sulfoxide. Cannot reduce cyclic N-oxides. Shows no activity as sulfite oxidase.[SAAS:SAAS00086612] The exact function is not known. Can catalyze the reduction of a variety of substrates like dimethyl sulfoxide, trimethylamine N-oxide, phenylmethyl sulfoxide and L-methionine sulfoxide. Cannot reduce cyclic N-oxides. Shows no activity as sulfite oxidase (By similarity).
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 25:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2bpb" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Starkeya novella~~]]	+	[[Category: Atcc 8093]]
	[[Category: Bailey, S]]		[[Category: Bailey, S]]
	[[Category: Kappler, U]]		[[Category: Kappler, U]]

OCA at 10:41, 8 January 2015

OCA — Thu, 08 Jan 2015 10:41:58 GMT

←Older revision		Revision as of 10:41, 8 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2bpb]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Starkeya_novella Starkeya novella]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BPB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BPB FirstGlance]. <br>		<table><tr><td colspan='2'>[[2bpb]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Starkeya_novella Starkeya novella]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BPB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BPB FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MSS:(MOLYBDOPTERIN-S,S)-OXO-MOLYBDENUM'>MSS</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MSS:(MOLYBDOPTERIN-S,S)-OXO-MOLYBDENUM'>MSS</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2blf\|2blf]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2blf\|2blf]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bpb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bpb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2bpb RCSB], [http://www.ebi.ac.uk/pdbsum/2bpb PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bpb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bpb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2bpb RCSB], [http://www.ebi.ac.uk/pdbsum/2bpb PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 30:
	</StructureSection>		</StructureSection>
	[[Category: Starkeya novella]]		[[Category: Starkeya novella]]
-	[[Category: Bailey, S.]]	+	[[Category: Bailey, S]]
-	[[Category: Kappler, U.]]	+	[[Category: Kappler, U]]
	[[Category: C-type cytochrome]]		[[Category: C-type cytochrome]]
	[[Category: Electron transport]]		[[Category: Electron transport]]

OCA at 01:24, 30 September 2014

OCA — Tue, 30 Sep 2014 01:24:49 GMT

←Older revision		Revision as of 01:24, 30 September 2014
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-	[[~~Image:~~2bpb.~~png~~\|~~left~~\|200px]]	+	==SULFITE DEHYDROGENASE FROM STARKEYA NOVELLA==
		+	<StructureSection load='2bpb' size='340' side='right' caption='[[2bpb]], [[Resolution\|resolution]] 1.90Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2bpb]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Starkeya_novella Starkeya novella]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BPB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BPB FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=MSS:(MOLYBDOPTERIN-S,S)-OXO-MOLYBDENUM'>MSS</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[2blf\|2blf]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bpb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bpb OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2bpb RCSB], [http://www.ebi.ac.uk/pdbsum/2bpb PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bp/2bpb_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Sulfite-oxidizing molybdoenzymes convert the highly reactive and therefore toxic sulfite to sulfate and have been identified in insects, animals, plants, and bacteria. Although the well studied enzymes from higher animals serve to detoxify sulfite that arises from the catabolism of sulfur-containing amino acids, the bacterial enzymes have a central role in converting sulfite formed during dissimilatory oxidation of reduced sulfur compounds. Here we describe the structure of the Starkeya novella sulfite dehydrogenase, a heterodimeric complex of the catalytic molybdopterin subunit and a c-type cytochrome subunit, that reveals the molecular mechanism of intramolecular electron transfer in sulfite-oxidizing enzymes. The close approach of the two redox centers in the protein complex (Mo-Fe distance 16.6 A) allows for rapid electron transfer via tunnelling or aided by the protein environment. The high resolution structure of the complex has allowed the identification of potential through-bond pathways for electron transfer including a direct link via Arg-55A and/or an aromatic-mediated pathway. A potential site of electron transfer to an external acceptor cytochrome c was also identified on the SorB subunit on the opposite side to the interaction with the catalytic SorA subunit.

-	~~{{STRUCTURE_2bpb\| PDB=2bpb \| SCENE= }}~~	+	Molecular basis of intramolecular electron transfer in sulfite-oxidizing enzymes is revealed by high resolution structure of a heterodimeric complex of the catalytic molybdopterin subunit and a c-type cytochrome subunit.,Kappler U, Bailey S J Biol Chem. 2005 Jul 1;280(26):24999-5007. Epub 2005 Apr 29. PMID:15863498<ref>PMID:15863498</ref>

-	~~===SULFITE DEHYDROGENASE FROM STARKEYA NOVELLA===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_15863498}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2bpb]] is~~ a ~~2 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Starkeya_novella Starkeya novella]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2BPB OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:015863498<~~/~~ref~~><~~ref group="xtra">PMID:015502330</ref><references group="xtra"~~/>	+
	[[Category: Starkeya novella]]		[[Category: Starkeya novella]]
	[[Category: Bailey, S.]]		[[Category: Bailey, S.]]

OCA at 12:34, 23 January 2013

OCA — Wed, 23 Jan 2013 12:34:16 GMT

←Older revision		Revision as of 12:34, 23 January 2013
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	[[Image:2bpb.png\|left\|200px]]		[[Image:2bpb.png\|left\|200px]]

-	<!--
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	{{STRUCTURE_2bpb\| PDB=2bpb \| SCENE= }}		{{STRUCTURE_2bpb\| PDB=2bpb \| SCENE= }}

	===SULFITE DEHYDROGENASE FROM STARKEYA NOVELLA===		===SULFITE DEHYDROGENASE FROM STARKEYA NOVELLA===

-
-	<!--
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	{{ABSTRACT_PUBMED_15863498}}		{{ABSTRACT_PUBMED_15863498}}

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	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15863498~~</ref><ref group="xtra">PMID:~~15502330~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015863498</ref><ref group="xtra">PMID:015502330</ref><references group="xtra"/>
	[[Category: Starkeya novella]]		[[Category: Starkeya novella]]
	[[Category: Bailey, S.]]		[[Category: Bailey, S.]]

OCA: Protected "2bpb" [edit=sysop:move=sysop]

OCA — Mon, 14 Mar 2011 21:06:45 GMT

Protected "2bpb" [edit=sysop:move=sysop]

←Older revision

Revision as of 21:06, 14 March 2011