2bz7 - Revision history

OCA at 13:59, 13 December 2023

OCA — Wed, 13 Dec 2023 13:59:31 GMT

←Older revision		Revision as of 13:59, 13 December 2023
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	<StructureSection load='2bz7' size='340' side='right'caption='[[2bz7]], [[Resolution\|resolution]] 1.76Å' scene=''>		<StructureSection load='2bz7' size='340' side='right'caption='[[2bz7]], [[Resolution\|resolution]] 1.76Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2bz7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Dryca Dryca~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BZ7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BZ7 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2bz7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Dryopteris_crassirhizoma Dryopteris crassirhizoma]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BZ7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BZ7 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.76Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[1kdi\|1kdi]], [[1kdj\|1kdj]], [[2bzc\|2bzc]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bz7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bz7 OCA], [https://pdbe.org/2bz7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bz7 RCSB], [https://www.ebi.ac.uk/pdbsum/2bz7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bz7 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bz7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bz7 OCA], [https://pdbe.org/2bz7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bz7 RCSB], [https://www.ebi.ac.uk/pdbsum/2bz7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bz7 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/PLAS_DRYCA PLAS_DRYCA]] Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I.	+	[https://www.uniprot.org/uniprot/PLAS_DRYCA PLAS_DRYCA] Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 29:		Line 29:
	</div>		</div>
	<div class="pdbe-citations 2bz7" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 2bz7" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Plastocyanin 3D structures\|Plastocyanin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Dryca~~]]	+	[[Category: Dryopteris crassirhizoma]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Hulsker, R]]	+	[[Category: Hulsker R]]
-	[[Category: Thomassen~~, E A.J~~]]	+	[[Category: Thomassen EAJ]]
-	[[Category: Ubbink, M]]	+	[[Category: Ubbink M]]
-	~~[[Category: Electron transport]]~~	+
-	~~[[Category: Fern]]~~	+
-	~~[[Category: Metal-binding]]~~	+
-	~~[[Category: Thylakoid]]~~	+
-	~~[[Category: Transport~~]]	+

OCA at 13:21, 24 November 2021

OCA — Wed, 24 Nov 2021 13:21:09 GMT

←Older revision		Revision as of 13:21, 24 November 2021
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	<StructureSection load='2bz7' size='340' side='right'caption='[[2bz7]], [[Resolution\|resolution]] 1.76Å' scene=''>		<StructureSection load='2bz7' size='340' side='right'caption='[[2bz7]], [[Resolution\|resolution]] 1.76Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2bz7]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Dryca Dryca]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BZ7 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2BZ7 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2bz7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Dryca Dryca]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BZ7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2BZ7 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kdi\|1kdi]], [[1kdj\|1kdj]], [[2bzc\|2bzc]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1kdi\|1kdi]], [[1kdj\|1kdj]], [[2bzc\|2bzc]]</div></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2bz7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bz7 OCA], [~~http~~://pdbe.org/2bz7 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2bz7 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2bz7 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2bz7 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2bz7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bz7 OCA], [https://pdbe.org/2bz7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2bz7 RCSB], [https://www.ebi.ac.uk/pdbsum/2bz7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2bz7 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/PLAS_DRYCA PLAS_DRYCA]] Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I.	+	[[https://www.uniprot.org/uniprot/PLAS_DRYCA PLAS_DRYCA]] Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 08:08, 19 February 2020

OCA — Wed, 19 Feb 2020 08:08:53 GMT

←Older revision		Revision as of 08:08, 19 February 2020
Line 1:		Line 1:

	==Oxidized and reduced structures of a mutant Plastocyanin of fern==		==Oxidized and reduced structures of a mutant Plastocyanin of fern==
-	<StructureSection load='2bz7' size='340' side='right' caption='[[2bz7]], [[Resolution\|resolution]] 1.76Å' scene=''>	+	<StructureSection load='2bz7' size='340' side='right'caption='[[2bz7]], [[Resolution\|resolution]] 1.76Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2bz7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dryca Dryca]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BZ7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BZ7 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2bz7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dryca Dryca]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BZ7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BZ7 FirstGlance]. <br>
Line 34:		Line 34:
	</StructureSection>		</StructureSection>
	[[Category: Dryca]]		[[Category: Dryca]]
		+	[[Category: Large Structures]]
	[[Category: Hulsker, R]]		[[Category: Hulsker, R]]
	[[Category: Thomassen, E A.J]]		[[Category: Thomassen, E A.J]]

OCA at 06:35, 16 May 2018

OCA — Wed, 16 May 2018 06:35:36 GMT

←Older revision		Revision as of 06:35, 16 May 2018
Line 1:		Line 1:
-	==~~OXIDIZED AND REDUCED STRUCTURES OF A MUTANT PLASTOCYANIN OF FERN~~==	+
		+	==Oxidized and reduced structures of a mutant Plastocyanin of fern==
	<StructureSection load='2bz7' size='340' side='right' caption='[[2bz7]], [[Resolution\|resolution]] 1.76Å' scene=''>		<StructureSection load='2bz7' size='340' side='right' caption='[[2bz7]], [[Resolution\|resolution]] 1.76Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
Line 5:		Line 6:
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kdi\|1kdi]], [[1kdj\|1kdj]], [[2bzc\|2bzc]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kdi\|1kdi]], [[1kdj\|1kdj]], [[2bzc\|2bzc]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bz7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bz7 OCA], [http://pdbe.org/2bz7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2bz7 RCSB], [http://www.ebi.ac.uk/pdbsum/2bz7 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bz7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bz7 OCA], [http://pdbe.org/2bz7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2bz7 RCSB], [http://www.ebi.ac.uk/pdbsum/2bz7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2bz7 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 14:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bz/2bz7_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bz/2bz7_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2bz7 ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 07:50, 11 September 2015

OCA — Fri, 11 Sep 2015 07:50:27 GMT

←Older revision		Revision as of 07:50, 11 September 2015
Line 2:		Line 2:
	<StructureSection load='2bz7' size='340' side='right' caption='[[2bz7]], [[Resolution\|resolution]] 1.76Å' scene=''>		<StructureSection load='2bz7' size='340' side='right' caption='[[2bz7]], [[Resolution\|resolution]] 1.76Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2bz7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Dryopteris_crassirhizoma Dryopteris crassirhizoma~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BZ7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BZ7 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2bz7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dryca Dryca]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BZ7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BZ7 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kdi\|1kdi]], [[1kdj\|1kdj]], [[2bzc\|2bzc]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kdi\|1kdi]], [[1kdj\|1kdj]], [[2bzc\|2bzc]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bz7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bz7 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2bz7 RCSB], [http://www.ebi.ac.uk/pdbsum/2bz7 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bz7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bz7 OCA], [http://pdbe.org/2bz7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2bz7 RCSB], [http://www.ebi.ac.uk/pdbsum/2bz7 PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 27:		Line 27:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2bz7" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Dryopteris crassirhizoma~~]]	+	[[Category: Dryca]]
	[[Category: Hulsker, R]]		[[Category: Hulsker, R]]
	[[Category: Thomassen, E A.J]]		[[Category: Thomassen, E A.J]]

OCA at 13:28, 25 December 2014

OCA — Thu, 25 Dec 2014 13:28:05 GMT

←Older revision		Revision as of 13:28, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2bz7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dryopteris_crassirhizoma Dryopteris crassirhizoma]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BZ7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BZ7 FirstGlance]. <br>		<table><tr><td colspan='2'>[[2bz7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dryopteris_crassirhizoma Dryopteris crassirhizoma]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BZ7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BZ7 FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kdi\|1kdi]], [[1kdj\|1kdj]], [[2bzc\|2bzc]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kdi\|1kdi]], [[1kdj\|1kdj]], [[2bzc\|2bzc]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bz7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bz7 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2bz7 RCSB], [http://www.ebi.ac.uk/pdbsum/2bz7 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bz7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bz7 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2bz7 RCSB], [http://www.ebi.ac.uk/pdbsum/2bz7 PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/PLAS_DRYCA PLAS_DRYCA]] Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 32:
	</StructureSection>		</StructureSection>
	[[Category: Dryopteris crassirhizoma]]		[[Category: Dryopteris crassirhizoma]]
-	[[Category: Hulsker, R.]]	+	[[Category: Hulsker, R]]
-	[[Category: Thomassen, E A.J.]]	+	[[Category: Thomassen, E A.J]]
-	[[Category: Ubbink, M.]]	+	[[Category: Ubbink, M]]
	[[Category: Electron transport]]		[[Category: Electron transport]]
	[[Category: Fern]]		[[Category: Fern]]

OCA at 00:15, 30 September 2014

OCA — Tue, 30 Sep 2014 00:15:07 GMT

←Older revision		Revision as of 00:15, 30 September 2014
Line 1:		Line 1:
-	[[~~Image:~~2bz7.~~png~~\|~~left~~\|200px]]	+	==OXIDIZED AND REDUCED STRUCTURES OF A MUTANT PLASTOCYANIN OF FERN==
		+	<StructureSection load='2bz7' size='340' side='right' caption='[[2bz7]], [[Resolution\|resolution]] 1.76Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2bz7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dryopteris_crassirhizoma Dryopteris crassirhizoma]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BZ7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2BZ7 FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1kdi\|1kdi]], [[1kdj\|1kdj]], [[2bzc\|2bzc]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2bz7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2bz7 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2bz7 RCSB], [http://www.ebi.ac.uk/pdbsum/2bz7 PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bz/2bz7_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Plastocyanin is a small blue copper protein that shuttles electrons as part of the photosynthetic redox chain. Its redox behavior is changed at low pH as a result of protonation of the solvent-exposed copper-coordinating histidine. Protonation and subsequent redox inactivation could have a role in the down regulation of photosynthesis. As opposed to plastocyanin from other sources, in fern plastocyanin His90 protonation at low pH has been reported not to occur. Two possible reasons for that have been proposed: pi-pi stacking between Phe12 and His90 and lack of a hydrogen bond with the backbone oxygen of Gly36. We have produced this fern plastocyanin recombinantly and examined the properties of wild-type protein and mutants Phe12Leu, Gly36Pro, and the double mutant with NMR spectroscopy, X-ray crystallography, and cyclic voltammetry. The results demonstrate that, contrary to earlier reports, protonation of His90 in the wild-type protein does occur in solution with a pKa of 4.4 (+/-0.1). Neither the single mutants nor the double mutant exhibit a change in protonation behavior, indicating that the suggested interactions have no influence. The crystal structure at low pH of the Gly36Pro variant does not show His90 protonation, similar to what was found for the wild-type protein. The structure suggests that movement of the imidazole ring is hindered by crystal contacts. This study illustrates a significant difference between results obtained in solution by NMR and by crystallography.

-	~~{{STRUCTURE_2bz7\| PDB=2bz7 \| SCENE= }}~~	+	Protonation of a histidine copper ligand in fern plastocyanin.,Hulsker R, Mery A, Thomassen EA, Ranieri A, Sola M, Verbeet MP, Kohzuma T, Ubbink M J Am Chem Soc. 2007 Apr 11;129(14):4423-9. Epub 2007 Mar 17. PMID:17367139<ref>PMID:17367139</ref>

-	~~===OXIDIZED AND REDUCED STRUCTURES OF A MUTANT PLASTOCYANIN OF FERN===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_17367139}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2bz7]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Dryopteris_crassirhizoma Dryopteris crassirhizoma]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2BZ7 OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:017367139<~~/~~ref~~><~~ref group="xtra">PMID:010529231</ref><references group="xtra"~~/>	+
	[[Category: Dryopteris crassirhizoma]]		[[Category: Dryopteris crassirhizoma]]
	[[Category: Hulsker, R.]]		[[Category: Hulsker, R.]]

OCA at 12:13, 23 January 2013

OCA — Wed, 23 Jan 2013 12:13:10 GMT

←Older revision		Revision as of 12:13, 23 January 2013
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	[[Image:2bz7.png\|left\|200px]]		[[Image:2bz7.png\|left\|200px]]

-	<!--
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-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2bz7\| PDB=2bz7 \| SCENE= }}		{{STRUCTURE_2bz7\| PDB=2bz7 \| SCENE= }}

	===OXIDIZED AND REDUCED STRUCTURES OF A MUTANT PLASTOCYANIN OF FERN===		===OXIDIZED AND REDUCED STRUCTURES OF A MUTANT PLASTOCYANIN OF FERN===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_17367139}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 17367139 is the PubMed ID number.
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	{{ABSTRACT_PUBMED_17367139}}		{{ABSTRACT_PUBMED_17367139}}

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	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~17367139~~</ref><ref group="xtra">PMID:~~10529231~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:017367139</ref><ref group="xtra">PMID:010529231</ref><references group="xtra"/>
	[[Category: Dryopteris crassirhizoma]]		[[Category: Dryopteris crassirhizoma]]
	[[Category: Hulsker, R.]]		[[Category: Hulsker, R.]]
Line 29:		Line 18:
	[[Category: Electron transport]]		[[Category: Electron transport]]
	[[Category: Fern]]		[[Category: Fern]]
-	[[Category: Membrane]]
	[[Category: Metal-binding]]		[[Category: Metal-binding]]
-	[[Category: Plastocyanin]]
	[[Category: Thylakoid]]		[[Category: Thylakoid]]
	[[Category: Transport]]		[[Category: Transport]]

OCA: Protected "2bz7" [edit=sysop:move=sysop]

OCA — Mon, 14 Mar 2011 18:44:28 GMT

Protected "2bz7" [edit=sysop:move=sysop]

←Older revision

Revision as of 18:44, 14 March 2011

OCA at 18:44, 14 March 2011

OCA — Mon, 14 Mar 2011 18:44:27 GMT

←Older revision		Revision as of 18:44, 14 March 2011
Line 1:		Line 1:
-	{{Seed}}
	[[Image:2bz7.png\|left\|200px]]		[[Image:2bz7.png\|left\|200px]]

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	==About this Structure==		==About this Structure==
-	~~2BZ7~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Dryopteris_crassirhizoma Dryopteris crassirhizoma]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BZ7 OCA]. ~~Relevant biological numbers for this protein at [http://bionumbers.hms.harvard.edu/search.aspx?log=y&task=searchbytrmorg&trm=%22plastocyanin%22&org=%25 B10NUMB3R5]~~	+	[[2bz7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dryopteris_crassirhizoma Dryopteris crassirhizoma]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2BZ7 OCA].

	==Reference==		==Reference==
Line 35:		Line 34:
	[[Category: Thylakoid]]		[[Category: Thylakoid]]
	[[Category: Transport]]		[[Category: Transport]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon May 25 07:56:25 2009''