2chh - Revision history

OCA at 14:17, 13 December 2023

OCA — Wed, 13 Dec 2023 14:17:18 GMT

←Older revision		Revision as of 14:17, 13 December 2023
Line 3:		Line 3:
	<StructureSection load='2chh' size='340' side='right'caption='[[2chh]], [[Resolution\|resolution]] 1.00Å' scene=''>		<StructureSection load='2chh' size='340' side='right'caption='[[2chh]], [[Resolution\|resolution]] 1.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2chh]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacillus_solanacearum"_smith_1896 "bacillus~~ solanacearum~~" smith 1896~~]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vyy 1vyy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CHH OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=2CHH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2chh]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ralstonia_solanacearum Ralstonia solanacearum]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vyy 1vyy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CHH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CHH FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene>~~</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1uqx\|1uqx]]~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=2chh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2chh OCA], [~~http~~://pdbe.org/2chh PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2chh RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2chh PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2chh ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2chh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2chh OCA], [https://pdbe.org/2chh PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2chh RCSB], [https://www.ebi.ac.uk/pdbsum/2chh PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2chh ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q8XUA5_RALSO Q8XUA5_RALSO]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 34:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Bacillus solanacearum smith 1896]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Imberty, A~~]]	+	[[Category: Ralstonia solanacearum]]
-	[[Category: ~~Mitchell, E P~~]]	+	[[Category: Imberty A]]
-	[[Category: ~~Wimmerova, M~~]]	+	[[Category: Mitchell EP]]
-	[[Category: ~~D-mannose]]~~	+	[[Category: Wimmerova M]]
-	~~[[Category: Hypothetical protein]]~~	+
-	~~[[Category: Lectin]]~~	+
-	~~[[Category: Plant pathogen]]~~	+
-	~~[[Category: Sugar-binding protein~~]]	+

OCA at 11:48, 23 September 2020

OCA — Wed, 23 Sep 2020 11:48:21 GMT

←Older revision		Revision as of 11:48, 23 September 2020
Line 1:		Line 1:

	==RALSTONIA SOLANACEARUM HIGH-AFFINITY MANNOSE-BINDING LECTIN==		==RALSTONIA SOLANACEARUM HIGH-AFFINITY MANNOSE-BINDING LECTIN==
-	<StructureSection load='2chh' size='340' side='right' caption='[[2chh]], [[Resolution\|resolution]] 1.00Å' scene=''>	+	<StructureSection load='2chh' size='340' side='right'caption='[[2chh]], [[Resolution\|resolution]] 1.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2chh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_solanacearum"_smith_1896 "bacillus solanacearum" smith 1896]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vyy 1vyy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CHH OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2CHH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2chh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_solanacearum"_smith_1896 "bacillus solanacearum" smith 1896]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vyy 1vyy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CHH OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=2CHH FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1uqx\|1uqx]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1uqx\|1uqx]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2chh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2chh OCA], [http://pdbe.org/2chh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2chh RCSB], [http://www.ebi.ac.uk/pdbsum/2chh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2chh ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=2chh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2chh OCA], [http://pdbe.org/2chh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2chh RCSB], [http://www.ebi.ac.uk/pdbsum/2chh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2chh ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 35:		Line 35:
	</StructureSection>		</StructureSection>
	[[Category: Bacillus solanacearum smith 1896]]		[[Category: Bacillus solanacearum smith 1896]]
		+	[[Category: Large Structures]]
	[[Category: Imberty, A]]		[[Category: Imberty, A]]
	[[Category: Mitchell, E P]]		[[Category: Mitchell, E P]]

OCA at 08:29, 23 May 2018

OCA — Wed, 23 May 2018 08:29:18 GMT

←Older revision		Revision as of 08:29, 23 May 2018
Line 1:		Line 1:
		+
	==RALSTONIA SOLANACEARUM HIGH-AFFINITY MANNOSE-BINDING LECTIN==		==RALSTONIA SOLANACEARUM HIGH-AFFINITY MANNOSE-BINDING LECTIN==
	<StructureSection load='2chh' size='340' side='right' caption='[[2chh]], [[Resolution\|resolution]] 1.00Å' scene=''>		<StructureSection load='2chh' size='340' side='right' caption='[[2chh]], [[Resolution\|resolution]] 1.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2chh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_solanacearum"_smith_1896 "bacillus solanacearum" smith 1896]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vyy 1vyy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CHH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CHH FirstGlance]. <br>		<table><tr><td colspan='2'>[[2chh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_solanacearum"_smith_1896 "bacillus solanacearum" smith 1896]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vyy 1vyy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CHH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CHH FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=~~UNX~~:~~UNKNOWN+ATOM+OR+ION~~'>~~UNX~~</scene>, <scene name='pdbligand=~~MAN~~:~~ALPHA-D-MANNOSE~~'>~~MAN~~</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1uqx\|1uqx]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1uqx\|1uqx]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2chh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2chh OCA], [http://pdbe.org/2chh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2chh RCSB], [http://www.ebi.ac.uk/pdbsum/2chh PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2chh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2chh OCA], [http://pdbe.org/2chh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2chh RCSB], [http://www.ebi.ac.uk/pdbsum/2chh PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2chh ProSAT]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ch/2chh_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ch/2chh_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 26:		Line 27:
	</div>		</div>
	<div class="pdbe-citations 2chh" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 2chh" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Mannose-binding protein\|Mannose-binding protein]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 13:27, 8 February 2016

OCA — Mon, 08 Feb 2016 13:27:03 GMT

←Older revision		Revision as of 13:27, 8 February 2016
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2chh ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 12:00, 10 September 2015

OCA — Thu, 10 Sep 2015 12:00:47 GMT

←Older revision		Revision as of 12:00, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='2chh' size='340' side='right' caption='[[2chh]], [[Resolution\|resolution]] 1.00Å' scene=''>		<StructureSection load='2chh' size='340' side='right' caption='[[2chh]], [[Resolution\|resolution]] 1.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2chh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Ralstonia_solanacearum Ralstonia~~ solanacearum]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vyy 1vyy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CHH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CHH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2chh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_solanacearum"_smith_1896 "bacillus solanacearum" smith 1896]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vyy 1vyy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CHH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CHH FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1uqx\|1uqx]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1uqx\|1uqx]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2chh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2chh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2chh RCSB], [http://www.ebi.ac.uk/pdbsum/2chh PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2chh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2chh OCA], [http://pdbe.org/2chh PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2chh RCSB], [http://www.ebi.ac.uk/pdbsum/2chh PDBsum]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 25:		Line 25:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2chh" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Ralstonia~~ solanacearum]]	+	[[Category: Bacillus solanacearum smith 1896]]
	[[Category: Imberty, A]]		[[Category: Imberty, A]]
	[[Category: Mitchell, E P]]		[[Category: Mitchell, E P]]

OCA at 16:49, 15 January 2015

OCA — Thu, 15 Jan 2015 16:49:08 GMT

←Older revision		Revision as of 16:49, 15 January 2015
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2chh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ralstonia_solanacearum Ralstonia solanacearum]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vyy 1vyy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CHH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CHH FirstGlance]. <br>		<table><tr><td colspan='2'>[[2chh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ralstonia_solanacearum Ralstonia solanacearum]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vyy 1vyy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CHH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CHH FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1uqx\|1uqx]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1uqx\|1uqx]]</td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2chh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2chh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2chh RCSB], [http://www.ebi.ac.uk/pdbsum/2chh PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2chh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2chh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2chh RCSB], [http://www.ebi.ac.uk/pdbsum/2chh PDBsum]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 30:		Line 30:
	</StructureSection>		</StructureSection>
	[[Category: Ralstonia solanacearum]]		[[Category: Ralstonia solanacearum]]
-	[[Category: Imberty, A.]]	+	[[Category: Imberty, A]]
-	[[Category: Mitchell, E P.]]	+	[[Category: Mitchell, E P]]
-	[[Category: Wimmerova, M.]]	+	[[Category: Wimmerova, M]]
	[[Category: D-mannose]]		[[Category: D-mannose]]
	[[Category: Hypothetical protein]]		[[Category: Hypothetical protein]]

OCA at 01:59, 30 September 2014

OCA — Tue, 30 Sep 2014 01:59:39 GMT

←Older revision		Revision as of 01:59, 30 September 2014
Line 1:		Line 1:
-	[[~~Image:~~2chh.~~png~~\|~~left~~\|200px]]	+	==RALSTONIA SOLANACEARUM HIGH-AFFINITY MANNOSE-BINDING LECTIN==
		+	<StructureSection load='2chh' size='340' side='right' caption='[[2chh]], [[Resolution\|resolution]] 1.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2chh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ralstonia_solanacearum Ralstonia solanacearum]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vyy 1vyy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CHH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CHH FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1uqx\|1uqx]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2chh FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2chh OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2chh RCSB], [http://www.ebi.ac.uk/pdbsum/2chh PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ch/2chh_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The plant pathogen Ralstonia solanacearum produces two lectins, each with different affinity to fucose. We described previously the properties and sequence of the first lectin, RSL (subunit M(r) 9.9 kDa), which is related to fungal lectins (Sudakevitz, D., Imberty, A., and Gilboa-Garber, N., 2002, J Biochem 132: 353-358). The present communication reports the discovery of the second one, RS-IIL (subunit M(r) 11.6 kDa), a tetrameric lectin, with high sequence similarity to the fucose-binding lectin PA-IIL of Pseudomonas aeruginosa. RS-IIL recognizes fucose but displays much higher affinity to mannose and fructose, which is opposite to the preference spectrum of PA-IIL. Determination of the crystal structure of RS-IIL complexed with a mannose derivative demonstrates a tetrameric structure very similar to the recently solved PA-IIL structure (Mitchell, E., et al., 2002, Nature Struct Biol 9: 918-921). Each monomer contains two close calcium cations that mediate the binding of the monosaccharide and explain the outstandingly high affinity to the monosaccharide ligand. The binding loop of the cations is fully conserved in RS-IIL and PA-IIL, whereas the preference for mannose versus fucose can be attributed to the change of a three-amino-acid sequence in the 'specificity loop'.

-	~~{{STRUCTURE_2chh\| PDB=2chh \| SCENE= }}~~	+	A new Ralstonia solanacearum high-affinity mannose-binding lectin RS-IIL structurally resembling the Pseudomonas aeruginosa fucose-specific lectin PA-IIL.,Sudakevitz D, Kostlanova N, Blatman-Jan G, Mitchell EP, Lerrer B, Wimmerova M, Katcoff DJ, Imberty A, Gilboa-Garber N Mol Microbiol. 2004 May;52(3):691-700. PMID:15101976<ref>PMID:15101976</ref>

-	~~===RALSTONIA SOLANACEARUM HIGH-AFFINITY MANNOSE-BINDING LECTIN===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_15101976}}~~	+	== References ==
-		+	<references/>
-	~~==About this Structure==~~	+	__TOC__
-	~~[[2chh]] is~~ a ~~1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ralstonia_solanacearum Ralstonia solanacearum]. This structure supersedes~~ the ~~now removed PDB entry [http://oca~~.~~weizmann~~.ac.il/~~oca-bin/send-pdb?obs=1&id=1vyy 1vyy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CHH OCA].~~	+	</StructureSection>
-		+
-	==~~Reference~~==	+
-	<~~ref group="xtra">PMID:015101976<~~/~~ref~~><~~references group="xtra"~~/>	+
	[[Category: Ralstonia solanacearum]]		[[Category: Ralstonia solanacearum]]
	[[Category: Imberty, A.]]		[[Category: Imberty, A.]]

OCA: Protected "2chh" [edit=sysop:move=sysop]

OCA — Sun, 06 Jan 2013 11:13:10 GMT

Protected "2chh" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:13, 6 January 2013

OCA at 11:13, 6 January 2013

OCA — Sun, 06 Jan 2013 11:13:07 GMT

←Older revision		Revision as of 11:13, 6 January 2013
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-	{{Seed}}
	[[Image:2chh.png\|left\|200px]]		[[Image:2chh.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2chh", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2chh\| PDB=2chh \| SCENE= }}		{{STRUCTURE_2chh\| PDB=2chh \| SCENE= }}

	===RALSTONIA SOLANACEARUM HIGH-AFFINITY MANNOSE-BINDING LECTIN===		===RALSTONIA SOLANACEARUM HIGH-AFFINITY MANNOSE-BINDING LECTIN===

-
-	<!--
-	The line below this paragraph, {{ABSTRACT_PUBMED_15101976}}, adds the Publication Abstract to the page
-	(as it appears on PubMed at http://www.pubmed.gov), where 15101976 is the PubMed ID number.
-	-->
	{{ABSTRACT_PUBMED_15101976}}		{{ABSTRACT_PUBMED_15101976}}

	==About this Structure==		==About this Structure==
-	~~2CHH~~ is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Ralstonia_solanacearum Ralstonia solanacearum]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vyy 1vyy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CHH OCA].	+	[[2chh]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ralstonia_solanacearum Ralstonia solanacearum]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vyy 1vyy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CHH OCA].

	==Reference==		==Reference==
-	<ref group="xtra">PMID:~~15101976~~</ref><references group="xtra"/>	+	<ref group="xtra">PMID:015101976</ref><references group="xtra"/>
	[[Category: Ralstonia solanacearum]]		[[Category: Ralstonia solanacearum]]
	[[Category: Imberty, A.]]		[[Category: Imberty, A.]]
Line 33:		Line 21:
	[[Category: Plant pathogen]]		[[Category: Plant pathogen]]
	[[Category: Sugar-binding protein]]		[[Category: Sugar-binding protein]]
-
-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 22:29:10 2009''

OCA at 20:29, 16 February 2009

OCA — Mon, 16 Feb 2009 20:29:12 GMT

←Older revision		Revision as of 20:29, 16 February 2009
Line 20:		Line 20:

	==About this Structure==		==About this Structure==
-	2CHH is a ~~[[Single protein]]~~ structure of sequence from [http://en.wikipedia.org/wiki/Ralstonia_solanacearum Ralstonia solanacearum]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vyy 1vyy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CHH OCA].	+	2CHH is a 1 chain structure of sequence from [http://en.wikipedia.org/wiki/Ralstonia_solanacearum Ralstonia solanacearum]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1vyy 1vyy]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CHH OCA].

	==Reference==		==Reference==
-	A new Ralstonia solanacearum high-affinity mannose-binding lectin RS-IIL structurally resembling the Pseudomonas aeruginosa fucose-specific lectin PA-IIL., Sudakevitz D, Kostlanova N, Blatman-Jan G, Mitchell EP, Lerrer B, Wimmerova M, Katcoff DJ, Imberty A, Gilboa-Garber N, Mol Microbiol. 2004 May;52(3):691-700. PMID:~~[http:~~//~~www.ncbi.nlm.nih.gov/pubmed/15101976 15101976]~~	+	<ref group="xtra">PMID:15101976</ref><references group="xtra"/>
	[[Category: Ralstonia solanacearum]]		[[Category: Ralstonia solanacearum]]
-	[[Category: Single protein]]
	[[Category: Imberty, A.]]		[[Category: Imberty, A.]]
	[[Category: Mitchell, E P.]]		[[Category: Mitchell, E P.]]
Line 35:		Line 34:
	[[Category: Sugar-binding protein]]		[[Category: Sugar-binding protein]]

-	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon ~~Jul 28 03~~:27:~~26 2008~~''	+	''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Feb 16 22:29:10 2009''