2cmu - Revision history

OCA at 11:27, 22 May 2024

OCA — Wed, 22 May 2024 11:27:28 GMT

←Older revision		Revision as of 11:27, 22 May 2024
Line 3:		Line 3:
	<StructureSection load='2cmu' size='340' side='right'caption='[[2cmu]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='2cmu' size='340' side='right'caption='[[2cmu]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2cmu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Campylobacter_pylori Campylobacter~~ pylori]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1x72 1x72]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CMU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CMU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2cmu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori_26695 Helicobacter pylori 26695]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1x72 1x72]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CMU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CMU FirstGlance]. <br>
-	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=MSE:SELENOMETHIONINE'>MSE</scene~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.5Å</td></tr>
-	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks~~'>~~[https://en.wikipedia.org/wiki/Arginine_deiminase Arginine deiminase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.3.6 3.5.3.6]~~ </~~span~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cmu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cmu OCA], [https://pdbe.org/2cmu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cmu RCSB], [https://www.ebi.ac.uk/pdbsum/2cmu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cmu ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2cmu TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cmu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cmu OCA], [https://pdbe.org/2cmu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cmu RCSB], [https://www.ebi.ac.uk/pdbsum/2cmu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cmu ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2cmu TOPSAN]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/O24890_HELPY O24890_HELPY]
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 20:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Arginine deiminase]]~~	+	[[Category: Helicobacter pylori 26695]]
-	~~[[Category: Campylobacter~~ pylori]]	+
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Kniewel, R]]	+	[[Category: Kniewel R]]
-	[[Category: Lima~~, C D]]~~	+	[[Category: Lima CD]]
-	~~[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics~~]]	+	[[Category: Rajashankar KR]]
-	[[Category: Rajashankar~~, K R~~]]	+	[[Category: Solorzano V]]
-	[[Category: Solorzano, V]]	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Hypothetical protein]]~~	+
-	~~[[Category: Jhp0042]]~~	+
-	~~[[Category: Peptidyl-arginine deiminase]]~~	+
-	~~[[Category: PSI, Protein structure initiative]]~~	+
-	~~[[Category: Structural genomic]]~~	+
-	~~[[Category: T1664]]~~	+
-	~~[[Category: Unknown function~~]]	+

OCA at 10:00, 26 May 2021

OCA — Wed, 26 May 2021 10:00:34 GMT

←Older revision		Revision as of 10:00, 26 May 2021
Line 3:		Line 3:
	<StructureSection load='2cmu' size='340' side='right'caption='[[2cmu]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='2cmu' size='340' side='right'caption='[[2cmu]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2cmu]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Campylobacter_pylori Campylobacter pylori]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1x72 1x72]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CMU OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2CMU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2cmu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Campylobacter_pylori Campylobacter pylori]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1x72 1x72]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CMU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CMU FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Arginine_deiminase Arginine deiminase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.3.6 3.5.3.6] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Arginine_deiminase Arginine deiminase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.3.6 3.5.3.6] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2cmu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cmu OCA], [~~http~~://pdbe.org/2cmu PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2cmu RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2cmu PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2cmu ProSAT], [~~http~~://www.topsan.org/Proteins/NYSGXRC/2cmu TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cmu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cmu OCA], [https://pdbe.org/2cmu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cmu RCSB], [https://www.ebi.ac.uk/pdbsum/2cmu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cmu ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2cmu TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==

OCA at 06:17, 21 August 2019

OCA — Wed, 21 Aug 2019 06:17:14 GMT

←Older revision		Revision as of 06:17, 21 August 2019
Line 1:		Line 1:

	==Crystal structure of a putative peptidyl-arginine deiminase==		==Crystal structure of a putative peptidyl-arginine deiminase==
-	<StructureSection load='2cmu' size='340' side='right' caption='[[2cmu]], [[Resolution\|resolution]] 2.50Å' scene=''>	+	<StructureSection load='2cmu' size='340' side='right'caption='[[2cmu]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2cmu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Campylobacter_pylori Campylobacter pylori]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1x72 1x72]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CMU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CMU FirstGlance]. <br>		<table><tr><td colspan='2'>[[2cmu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Campylobacter_pylori Campylobacter pylori]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1x72 1x72]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CMU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CMU FirstGlance]. <br>
Line 22:		Line 22:
	[[Category: Arginine deiminase]]		[[Category: Arginine deiminase]]
	[[Category: Campylobacter pylori]]		[[Category: Campylobacter pylori]]
		+	[[Category: Large Structures]]
	[[Category: Kniewel, R]]		[[Category: Kniewel, R]]
	[[Category: Lima, C D]]		[[Category: Lima, C D]]

OCA at 08:04, 23 May 2018

OCA — Wed, 23 May 2018 08:04:02 GMT

←Older revision		Revision as of 08:04, 23 May 2018
Line 1:		Line 1:
-	==Crystal structure of a putative peptidyl-arginine deiminase.==	+
		+	==Crystal structure of a putative peptidyl-arginine deiminase==
	<StructureSection load='2cmu' size='340' side='right' caption='[[2cmu]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='2cmu' size='340' side='right' caption='[[2cmu]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2cmu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Campylobacter_pylori_j99~~ Campylobacter pylori ~~j99~~]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1x72 1x72]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CMU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CMU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2cmu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Campylobacter_pylori Campylobacter pylori]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1x72 1x72]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CMU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CMU FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Arginine_deiminase Arginine deiminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.3.6 3.5.3.6] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Arginine_deiminase Arginine deiminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.3.6 3.5.3.6] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cmu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cmu OCA], [http://pdbe.org/2cmu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2cmu RCSB], [http://www.ebi.ac.uk/pdbsum/2cmu PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2cmu TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cmu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cmu OCA], [http://pdbe.org/2cmu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2cmu RCSB], [http://www.ebi.ac.uk/pdbsum/2cmu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2cmu ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/2cmu TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 11:		Line 12:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cm/2cmu_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cm/2cmu_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 20:		Line 21:
	</StructureSection>		</StructureSection>
	[[Category: Arginine deiminase]]		[[Category: Arginine deiminase]]
-	[[Category: Campylobacter pylori ~~j99~~]]	+	[[Category: Campylobacter pylori]]
	[[Category: Kniewel, R]]		[[Category: Kniewel, R]]
	[[Category: Lima, C D]]		[[Category: Lima, C D]]

OCA at 16:11, 8 February 2016

OCA — Mon, 08 Feb 2016 16:11:16 GMT

←Older revision		Revision as of 16:11, 8 February 2016
Line 5:		Line 5:
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Arginine_deiminase Arginine deiminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.3.6 3.5.3.6] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Arginine_deiminase Arginine deiminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.3.6 3.5.3.6] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cmu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cmu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2cmu RCSB], [http://www.ebi.ac.uk/pdbsum/2cmu PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2cmu TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cmu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cmu OCA], [http://pdbe.org/2cmu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2cmu RCSB], [http://www.ebi.ac.uk/pdbsum/2cmu PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2cmu TOPSAN]</span></td></tr>
	</table>		</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
Line 15:		Line 15:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cmu ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	__TOC__		__TOC__

OCA at 06:43, 22 April 2015

OCA — Wed, 22 Apr 2015 06:43:23 GMT

←Older revision		Revision as of 06:43, 22 April 2015
Line 1:		Line 1:
-	==~~CRYSTAL STRUCTURE OF A PUTATIVE PEPTIDYL~~-~~ARGININE DEIMINASE~~==	+	==Crystal structure of a putative peptidyl-arginine deiminase.==
	<StructureSection load='2cmu' size='340' side='right' caption='[[2cmu]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='2cmu' size='340' side='right' caption='[[2cmu]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2cmu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Helicobacter_pylori_j99 Helicobacter~~ pylori j99]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1x72 1x72]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CMU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CMU FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2cmu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Campylobacter_pylori_j99 Campylobacter pylori j99]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1x72 1x72]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CMU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CMU FirstGlance]. <br>
	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Arginine_deiminase Arginine deiminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.3.6 3.5.3.6] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Arginine_deiminase Arginine deiminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.3.6 3.5.3.6] </span></td></tr>
Line 20:		Line 20:
	</StructureSection>		</StructureSection>
	[[Category: Arginine deiminase]]		[[Category: Arginine deiminase]]
-	[[Category: ~~Helicobacter~~ pylori j99]]	+	[[Category: Campylobacter pylori j99]]
	[[Category: Kniewel, R]]		[[Category: Kniewel, R]]
	[[Category: Lima, C D]]		[[Category: Lima, C D]]

OCA at 12:26, 6 November 2014

OCA — Thu, 06 Nov 2014 12:26:13 GMT

←Older revision		Revision as of 12:26, 6 November 2014
Line 21:		Line 21:
	[[Category: Arginine deiminase]]		[[Category: Arginine deiminase]]
	[[Category: Helicobacter pylori j99]]		[[Category: Helicobacter pylori j99]]
		+	[[Category: Kniewel, R]]
		+	[[Category: Lima, C D]]
		+	[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
		+	[[Category: Rajashankar, K R]]
		+	[[Category: Solorzano, V]]
		+	[[Category: Hydrolase]]
	[[Category: Hypothetical protein]]		[[Category: Hypothetical protein]]
	[[Category: Jhp0042]]		[[Category: Jhp0042]]
	[[Category: Peptidyl-arginine deiminase]]		[[Category: Peptidyl-arginine deiminase]]
		+	[[Category: PSI, Protein structure initiative]]
		+	[[Category: Structural genomic]]
	[[Category: T1664]]		[[Category: T1664]]
		+	[[Category: Unknown function]]

OCA at 11:24, 6 November 2014

OCA — Thu, 06 Nov 2014 11:24:34 GMT

←Older revision		Revision as of 11:24, 6 November 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2cmu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori_j99 Helicobacter pylori j99]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1x72 1x72]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CMU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CMU FirstGlance]. <br>		<table><tr><td colspan='2'>[[2cmu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori_j99 Helicobacter pylori j99]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1x72 1x72]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CMU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CMU FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Arginine_deiminase Arginine deiminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.3.6 3.5.3.6] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Arginine_deiminase Arginine deiminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.3.6 3.5.3.6] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cmu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cmu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2cmu RCSB], [http://www.ebi.ac.uk/pdbsum/2cmu PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2cmu TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cmu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cmu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2cmu RCSB], [http://www.ebi.ac.uk/pdbsum/2cmu PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2cmu TOPSAN]</span></td></tr>
-	<table>	+	</table>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 21:		Line 21:
	[[Category: Arginine deiminase]]		[[Category: Arginine deiminase]]
	[[Category: Helicobacter pylori j99]]		[[Category: Helicobacter pylori j99]]
-	[[Category: Kniewel, R.]]
-	[[Category: Lima, C D.]]
-	[[Category: Nysgxrc, New York Structural Genomix Research Consortium.]]
-	[[Category: Rajashankar, K R.]]
-	[[Category: Solorzano, V.]]
-	[[Category: Hydrolase]]
	[[Category: Hypothetical protein]]		[[Category: Hypothetical protein]]
	[[Category: Jhp0042]]		[[Category: Jhp0042]]
-	[[Category: New york structural genomix research consortium]]
-	[[Category: Nysgxrc]]
	[[Category: Peptidyl-arginine deiminase]]		[[Category: Peptidyl-arginine deiminase]]
-	[[Category: Protein structure initiative]]
-	[[Category: Psi]]
-	[[Category: Structural genomic]]
	[[Category: T1664]]		[[Category: T1664]]
-	[[Category: Unknown function]]

OCA at 23:52, 29 September 2014

OCA — Mon, 29 Sep 2014 23:52:08 GMT

←Older revision		Revision as of 23:52, 29 September 2014
Line 1:		Line 1:
-	~~[[Image:2cmu.png\|left\|200px]]~~	+	==CRYSTAL STRUCTURE OF A PUTATIVE PEPTIDYL-ARGININE DEIMINASE==
-		+	<StructureSection load='2cmu' size='340' side='right' caption='[[2cmu]], [[Resolution\|resolution]] 2.50Å' scene=''>
-	~~{{STRUCTURE_2cmu\| PDB=2cmu \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2cmu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori_j99 Helicobacter pylori j99]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1x72 1x72]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CMU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CMU FirstGlance]. <br>
-	===CRYSTAL STRUCTURE OF A PUTATIVE PEPTIDYL-ARGININE DEIMINASE===	+	</td></tr><tr><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Arginine_deiminase Arginine deiminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.3.6 3.5.3.6] </span></td></tr>
-		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cmu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cmu OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2cmu RCSB], [http://www.ebi.ac.uk/pdbsum/2cmu PDBsum], [http://www.topsan.org/Proteins/NYSGXRC/2cmu TOPSAN]</span></td></tr>
-	==~~About this Structure~~==	+	<table>
-	[[2cmu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori_j99 Helicobacter pylori j99]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1x72 1x72]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CMU OCA].	+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cm/2cmu_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	__TOC__
		+	</StructureSection>
	[[Category: Arginine deiminase]]		[[Category: Arginine deiminase]]
	[[Category: Helicobacter pylori j99]]		[[Category: Helicobacter pylori j99]]

OCA at 09:20, 6 January 2013

OCA — Sun, 06 Jan 2013 09:20:48 GMT

←Older revision		Revision as of 09:20, 6 January 2013
Line 1:		Line 1:
	[[Image:2cmu.png\|left\|200px]]		[[Image:2cmu.png\|left\|200px]]

-	<!--
-	The line below this paragraph, containing "STRUCTURE_2cmu", creates the "Structure Box" on the page.
-	You may change the PDB parameter (which sets the PDB file loaded into the applet)
-	or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-	or leave the SCENE parameter empty for the default display.
-	-->
	{{STRUCTURE_2cmu\| PDB=2cmu \| SCENE= }}		{{STRUCTURE_2cmu\| PDB=2cmu \| SCENE= }}

Line 13:		Line 7:

	==About this Structure==		==About this Structure==
-	[[2cmu]] is a 1 chain structure ~~of [[Recombinase A]]~~ with sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori_j99 Helicobacter pylori j99]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1x72 1x72]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CMU OCA].	+	[[2cmu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori_j99 Helicobacter pylori j99]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1x72 1x72]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CMU OCA].
-		+
-	~~==See Also==~~	+
-	*[[Recombinase A]]	+
	[[Category: Arginine deiminase]]		[[Category: Arginine deiminase]]
	[[Category: Helicobacter pylori j99]]		[[Category: Helicobacter pylori j99]]