2cnf - Revision history

OCA at 09:28, 9 May 2024

OCA — Thu, 09 May 2024 09:28:21 GMT

←Older revision		Revision as of 09:28, 9 May 2024
Line 3:		Line 3:
	<StructureSection load='2cnf' size='340' side='right'caption='[[2cnf]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='2cnf' size='340' side='right'caption='[[2cnf]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2cnf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Human Human~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CNF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CNF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2cnf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CNF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CNF FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=F32:(5S)-5-{4-[(2S)-2-(1H-BENZIMIDAZOL-2-YL)-2-(1,3-BENZOTHIAZOL-2-YLAMINO)ETHYL]PHENYL}ISOTHIAZOLIDIN-3-ONE+1,1-DIOXIDE'>F32</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.2Å</td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1a5y\|1a5y]], [[1aax\|1aax]], [[1bzc\|1bzc]], [[1bzh\|1bzh]], [[1bzj\|1bzj]], [[1c83\|1c83]], [[1c84\|1c84]], [[1c85\|1c85]], [[1c86\|1c86]], [[1c87\|1c87]], [[1c88\|1c88]], [[1ecv\|1ecv]], [[1een\|1een]], [[1eeo\|1eeo]], [[1g1f\|1g1f]], [[1g1g\|1g1g]], [[1g1h\|1g1h]], [[1g7f\|1g7f]], [[1g7g\|1g7g]], [[1gfy\|1gfy]], [[1i57\|1i57]], [[1jf7\|1jf7]], [[1kak\|1kak]], [[1kav\|1kav]], [[1l8g\|1l8g]], [[1lqf\|1lqf]], [[1nl9\|1nl9]], [[1nny\|1nny]], [[1no6\|1no6]], [[1nwe\|1nwe]], [[1nwl\|1nwl]], [[1nz7\|1nz7]], [[1oem\|1oem]], [[1oeo\|1oeo]], [[1oes\|1oes]], [[1oet\|1oet]], [[1oeu\|1oeu]], [[1oev\|1oev]], [[1ony\|1ony]], [[1onz\|1onz]], [[1pa1\|1pa1]], [[1ph0\|1ph0]], [[1ptt\|1ptt]], [[1ptu\|1ptu]], [[1ptv\|1ptv]], [[1pty\|1pty]], [[1pxh\|1pxh]], [[1pyn\|1pyn]], [[1q1m\|1q1m]], [[1q6j\|1q6j]], [[1q6m\|1q6m]], [[1q6n\|1q6n]], [[1q6p\|1q6p]], [[1q6s\|1q6s]], [[1q6t\|1q6t]], [[1qxk\|1qxk]], [[1sug\|1sug]], [[1t48\|1t48]], [[1t49\|1t49]], [[1t4j\|1t4j]], [[1wax\|1wax]], [[1xbo\|1xbo]], [[2azr\|2azr]], [[2b07\|2b07]], [[2b4s\|2b4s]], [[2bgd\|2bgd]], [[2bge\|2bge]], [[2cm2\|2cm2]], [[2cm3\|2cm3]], [[2cm7\|2cm7]], [[2cm8\|2cm8]], [[2cma\|2cma]], [[2cmb\|2cmb]], [[2cmc\|2cmc]], [[2cne\|2cne]], [[2f6f\|2f6f]], [[2f6t\|2f6t]], [[2f6v\|2f6v]], [[2f6w\|2f6w]], [[2f6y\|2f6y]], [[2f6z\|2f6z]], [[2f70\|2f70]], [[2f71\|2f71]], [[2fjm\|2fjm]], [[2fjn\|2fjn]], [[2hnp\|2hnp]], [[2hnq\|2hnq]]</div></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=F32:(5S)-5-{4-[(2S)-2-(1H-BENZIMIDAZOL-2-YL)-2-(1,3-BENZOTHIAZOL-2-YLAMINO)ETHYL]PHENYL}ISOTHIAZOLIDIN-3-ONE+1,1-DIOXIDE'>F32</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Protein-tyrosine-phosphatase Protein-tyrosine-phosphatase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.48 3.1.3.48] </span></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cnf OCA], [https://pdbe.org/2cnf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cnf RCSB], [https://www.ebi.ac.uk/pdbsum/2cnf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cnf ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cnf OCA], [https://pdbe.org/2cnf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cnf RCSB], [https://www.ebi.ac.uk/pdbsum/2cnf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cnf ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/PTN1_HUMAN PTN1_HUMAN]] Tyrosine-protein phosphatase which acts as a regulator of endoplasmic reticulum unfolded protein response. Mediates dephosphorylation of EIF2AK3/PERK; inactivating the protein kinase activity of EIF2AK3/PERK. May play an important role in CKII- and p60c-src-induced signal transduction cascades. May regulate the EFNA5-EPHA3 signaling pathway which modulates cell reorganization and cell-cell repulsion.<ref>PMID:21135139</ref> <ref>PMID:22169477</ref>	+	[https://www.uniprot.org/uniprot/PTN1_HUMAN PTN1_HUMAN] Tyrosine-protein phosphatase which acts as a regulator of endoplasmic reticulum unfolded protein response. Mediates dephosphorylation of EIF2AK3/PERK; inactivating the protein kinase activity of EIF2AK3/PERK. May play an important role in CKII- and p60c-src-induced signal transduction cascades. May regulate the EFNA5-EPHA3 signaling pathway which modulates cell reorganization and cell-cell repulsion.<ref>PMID:21135139</ref> <ref>PMID:22169477</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Human~~]]	+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Protein-tyrosine-phosphatase]]~~	+	[[Category: Ala PJ]]
-	[[Category: Ala~~, P J~~]]	+	[[Category: Becker-Pasha M]]
-	[[Category: Becker-Pasha, M]]	+	[[Category: Burn TC]]
-	[[Category: Burn~~, T C~~]]	+	[[Category: Combs AP]]
-	[[Category: Combs~~, A P~~]]	+	[[Category: Crawley ML]]
-	[[Category: Crawley~~, M L~~]]	+	[[Category: Douty B]]
-	[[Category: Douty, B]]	+	[[Category: Glass B]]
-	[[Category: Glass, B]]	+	[[Category: Gonneville L]]
-	[[Category: Gonneville, L]]	+	[[Category: Hillman M]]
-	[[Category: Hillman, M]]	+	[[Category: Hollis GF]]
-	[[Category: Hollis~~, G F~~]]	+	[[Category: McLaughlin E]]
-	[[Category: McLaughlin, E]]	+	[[Category: Polam P]]
-	[[Category: Polam, P]]	+	[[Category: Sparks RB]]
-	[[Category: Sparks~~, R B~~]]	+	[[Category: Takvorian A]]
-	[[Category: Takvorian, A]]	+	[[Category: Wayland B]]
-	[[Category: Wayland, B]]	+	[[Category: Wynn R]]
-	[[Category: Wynn, R]]	+	[[Category: Yue EW]]
-	[[Category: Yue~~, E W]]~~	+
-	~~[[Category: Acetylation]]~~	+
-	~~[[Category: Endoplasmic reticulum]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Oxidation]]~~	+
-	~~[[Category: Phosphatase]]~~	+
-	~~[[Category: Phosphorylation]]~~	+
-	~~[[Category: Polymorphism]]~~	+
-	~~[[Category: Protein phosphatase~~]]	+

OCA at 10:00, 26 May 2021

OCA — Wed, 26 May 2021 10:00:45 GMT

←Older revision		Revision as of 10:00, 26 May 2021
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	<StructureSection load='2cnf' size='340' side='right'caption='[[2cnf]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='2cnf' size='340' side='right'caption='[[2cnf]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2cnf]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CNF OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2CNF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2cnf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CNF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CNF FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=F32:(5S)-5-{4-[(2S)-2-(1H-BENZIMIDAZOL-2-YL)-2-(1,3-BENZOTHIAZOL-2-YLAMINO)ETHYL]PHENYL}ISOTHIAZOLIDIN-3-ONE+1,1-DIOXIDE'>F32</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=F32:(5S)-5-{4-[(2S)-2-(1H-BENZIMIDAZOL-2-YL)-2-(1,3-BENZOTHIAZOL-2-YLAMINO)ETHYL]PHENYL}ISOTHIAZOLIDIN-3-ONE+1,1-DIOXIDE'>F32</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1a5y\|1a5y]], [[1aax\|1aax]], [[1bzc\|1bzc]], [[1bzh\|1bzh]], [[1bzj\|1bzj]], [[1c83\|1c83]], [[1c84\|1c84]], [[1c85\|1c85]], [[1c86\|1c86]], [[1c87\|1c87]], [[1c88\|1c88]], [[1ecv\|1ecv]], [[1een\|1een]], [[1eeo\|1eeo]], [[1g1f\|1g1f]], [[1g1g\|1g1g]], [[1g1h\|1g1h]], [[1g7f\|1g7f]], [[1g7g\|1g7g]], [[1gfy\|1gfy]], [[1i57\|1i57]], [[1jf7\|1jf7]], [[1kak\|1kak]], [[1kav\|1kav]], [[1l8g\|1l8g]], [[1lqf\|1lqf]], [[1nl9\|1nl9]], [[1nny\|1nny]], [[1no6\|1no6]], [[1nwe\|1nwe]], [[1nwl\|1nwl]], [[1nz7\|1nz7]], [[1oem\|1oem]], [[1oeo\|1oeo]], [[1oes\|1oes]], [[1oet\|1oet]], [[1oeu\|1oeu]], [[1oev\|1oev]], [[1ony\|1ony]], [[1onz\|1onz]], [[1pa1\|1pa1]], [[1ph0\|1ph0]], [[1ptt\|1ptt]], [[1ptu\|1ptu]], [[1ptv\|1ptv]], [[1pty\|1pty]], [[1pxh\|1pxh]], [[1pyn\|1pyn]], [[1q1m\|1q1m]], [[1q6j\|1q6j]], [[1q6m\|1q6m]], [[1q6n\|1q6n]], [[1q6p\|1q6p]], [[1q6s\|1q6s]], [[1q6t\|1q6t]], [[1qxk\|1qxk]], [[1sug\|1sug]], [[1t48\|1t48]], [[1t49\|1t49]], [[1t4j\|1t4j]], [[1wax\|1wax]], [[1xbo\|1xbo]], [[2azr\|2azr]], [[2b07\|2b07]], [[2b4s\|2b4s]], [[2bgd\|2bgd]], [[2bge\|2bge]], [[2cm2\|2cm2]], [[2cm3\|2cm3]], [[2cm7\|2cm7]], [[2cm8\|2cm8]], [[2cma\|2cma]], [[2cmb\|2cmb]], [[2cmc\|2cmc]], [[2cne\|2cne]], [[2f6f\|2f6f]], [[2f6t\|2f6t]], [[2f6v\|2f6v]], [[2f6w\|2f6w]], [[2f6y\|2f6y]], [[2f6z\|2f6z]], [[2f70\|2f70]], [[2f71\|2f71]], [[2fjm\|2fjm]], [[2fjn\|2fjn]], [[2hnp\|2hnp]], [[2hnq\|2hnq]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1a5y\|1a5y]], [[1aax\|1aax]], [[1bzc\|1bzc]], [[1bzh\|1bzh]], [[1bzj\|1bzj]], [[1c83\|1c83]], [[1c84\|1c84]], [[1c85\|1c85]], [[1c86\|1c86]], [[1c87\|1c87]], [[1c88\|1c88]], [[1ecv\|1ecv]], [[1een\|1een]], [[1eeo\|1eeo]], [[1g1f\|1g1f]], [[1g1g\|1g1g]], [[1g1h\|1g1h]], [[1g7f\|1g7f]], [[1g7g\|1g7g]], [[1gfy\|1gfy]], [[1i57\|1i57]], [[1jf7\|1jf7]], [[1kak\|1kak]], [[1kav\|1kav]], [[1l8g\|1l8g]], [[1lqf\|1lqf]], [[1nl9\|1nl9]], [[1nny\|1nny]], [[1no6\|1no6]], [[1nwe\|1nwe]], [[1nwl\|1nwl]], [[1nz7\|1nz7]], [[1oem\|1oem]], [[1oeo\|1oeo]], [[1oes\|1oes]], [[1oet\|1oet]], [[1oeu\|1oeu]], [[1oev\|1oev]], [[1ony\|1ony]], [[1onz\|1onz]], [[1pa1\|1pa1]], [[1ph0\|1ph0]], [[1ptt\|1ptt]], [[1ptu\|1ptu]], [[1ptv\|1ptv]], [[1pty\|1pty]], [[1pxh\|1pxh]], [[1pyn\|1pyn]], [[1q1m\|1q1m]], [[1q6j\|1q6j]], [[1q6m\|1q6m]], [[1q6n\|1q6n]], [[1q6p\|1q6p]], [[1q6s\|1q6s]], [[1q6t\|1q6t]], [[1qxk\|1qxk]], [[1sug\|1sug]], [[1t48\|1t48]], [[1t49\|1t49]], [[1t4j\|1t4j]], [[1wax\|1wax]], [[1xbo\|1xbo]], [[2azr\|2azr]], [[2b07\|2b07]], [[2b4s\|2b4s]], [[2bgd\|2bgd]], [[2bge\|2bge]], [[2cm2\|2cm2]], [[2cm3\|2cm3]], [[2cm7\|2cm7]], [[2cm8\|2cm8]], [[2cma\|2cma]], [[2cmb\|2cmb]], [[2cmc\|2cmc]], [[2cne\|2cne]], [[2f6f\|2f6f]], [[2f6t\|2f6t]], [[2f6v\|2f6v]], [[2f6w\|2f6w]], [[2f6y\|2f6y]], [[2f6z\|2f6z]], [[2f70\|2f70]], [[2f71\|2f71]], [[2fjm\|2fjm]], [[2fjn\|2fjn]], [[2hnp\|2hnp]], [[2hnq\|2hnq]]</div></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Protein-tyrosine-phosphatase Protein-tyrosine-phosphatase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.48 3.1.3.48] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Protein-tyrosine-phosphatase Protein-tyrosine-phosphatase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.48 3.1.3.48] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2cnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cnf OCA], [~~http~~://pdbe.org/2cnf PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2cnf RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2cnf PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2cnf ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cnf OCA], [https://pdbe.org/2cnf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cnf RCSB], [https://www.ebi.ac.uk/pdbsum/2cnf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cnf ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/PTN1_HUMAN PTN1_HUMAN]] Tyrosine-protein phosphatase which acts as a regulator of endoplasmic reticulum unfolded protein response. Mediates dephosphorylation of EIF2AK3/PERK; inactivating the protein kinase activity of EIF2AK3/PERK. May play an important role in CKII- and p60c-src-induced signal transduction cascades. May regulate the EFNA5-EPHA3 signaling pathway which modulates cell reorganization and cell-cell repulsion.<ref>PMID:21135139</ref> <ref>PMID:22169477</ref>	+	[[https://www.uniprot.org/uniprot/PTN1_HUMAN PTN1_HUMAN]] Tyrosine-protein phosphatase which acts as a regulator of endoplasmic reticulum unfolded protein response. Mediates dephosphorylation of EIF2AK3/PERK; inactivating the protein kinase activity of EIF2AK3/PERK. May play an important role in CKII- and p60c-src-induced signal transduction cascades. May regulate the EFNA5-EPHA3 signaling pathway which modulates cell reorganization and cell-cell repulsion.<ref>PMID:21135139</ref> <ref>PMID:22169477</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 32:		Line 32:

	==See Also==		==See Also==
-	*[[Tyrosine phosphatase\|Tyrosine phosphatase]]	+	*[[Tyrosine phosphatase 3D structures\|Tyrosine phosphatase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 07:32, 21 August 2019

OCA — Wed, 21 Aug 2019 07:32:43 GMT

←Older revision		Revision as of 07:32, 21 August 2019
Line 1:		Line 1:

	==Structural Insights into the Design of Nonpeptidic Isothiazolidinone- Containing Inhibitors of Protein Tyrosine Phosphatase 1B==		==Structural Insights into the Design of Nonpeptidic Isothiazolidinone- Containing Inhibitors of Protein Tyrosine Phosphatase 1B==
-	<StructureSection load='2cnf' size='340' side='right' caption='[[2cnf]], [[Resolution\|resolution]] 2.20Å' scene=''>	+	<StructureSection load='2cnf' size='340' side='right'caption='[[2cnf]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2cnf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CNF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CNF FirstGlance]. <br>		<table><tr><td colspan='2'>[[2cnf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CNF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CNF FirstGlance]. <br>
Line 15:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cn/2cnf_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cn/2cnf_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
Line 30:		Line 30:
	</div>		</div>
	<div class="pdbe-citations 2cnf" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 2cnf" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Tyrosine phosphatase\|Tyrosine phosphatase]]
	== References ==		== References ==
	<references/>		<references/>
Line 35:		Line 38:
	</StructureSection>		</StructureSection>
	[[Category: Human]]		[[Category: Human]]
		+	[[Category: Large Structures]]
	[[Category: Protein-tyrosine-phosphatase]]		[[Category: Protein-tyrosine-phosphatase]]
	[[Category: Ala, P J]]		[[Category: Ala, P J]]

OCA at 07:16, 16 November 2017

OCA — Thu, 16 Nov 2017 07:16:55 GMT

←Older revision		Revision as of 07:16, 16 November 2017
Line 1:		Line 1:
-	==~~STRUCTURAL INSIGHTS INTO THE DESIGN OF NONPEPTIDIC ISOTHIAZOLIDINONE~~-~~CONTAINING INHIBITORS OF PROTEIN TYROSINE PHOSPHATASE~~ 1B==	+
		+	==Structural Insights into the Design of Nonpeptidic Isothiazolidinone- Containing Inhibitors of Protein Tyrosine Phosphatase 1B==
	<StructureSection load='2cnf' size='340' side='right' caption='[[2cnf]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='2cnf' size='340' side='right' caption='[[2cnf]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1a5y\|1a5y]], [[1aax\|1aax]], [[1bzc\|1bzc]], [[1bzh\|1bzh]], [[1bzj\|1bzj]], [[1c83\|1c83]], [[1c84\|1c84]], [[1c85\|1c85]], [[1c86\|1c86]], [[1c87\|1c87]], [[1c88\|1c88]], [[1ecv\|1ecv]], [[1een\|1een]], [[1eeo\|1eeo]], [[1g1f\|1g1f]], [[1g1g\|1g1g]], [[1g1h\|1g1h]], [[1g7f\|1g7f]], [[1g7g\|1g7g]], [[1gfy\|1gfy]], [[1i57\|1i57]], [[1jf7\|1jf7]], [[1kak\|1kak]], [[1kav\|1kav]], [[1l8g\|1l8g]], [[1lqf\|1lqf]], [[1nl9\|1nl9]], [[1nny\|1nny]], [[1no6\|1no6]], [[1nwe\|1nwe]], [[1nwl\|1nwl]], [[1nz7\|1nz7]], [[1oem\|1oem]], [[1oeo\|1oeo]], [[1oes\|1oes]], [[1oet\|1oet]], [[1oeu\|1oeu]], [[1oev\|1oev]], [[1ony\|1ony]], [[1onz\|1onz]], [[1pa1\|1pa1]], [[1ph0\|1ph0]], [[1ptt\|1ptt]], [[1ptu\|1ptu]], [[1ptv\|1ptv]], [[1pty\|1pty]], [[1pxh\|1pxh]], [[1pyn\|1pyn]], [[1q1m\|1q1m]], [[1q6j\|1q6j]], [[1q6m\|1q6m]], [[1q6n\|1q6n]], [[1q6p\|1q6p]], [[1q6s\|1q6s]], [[1q6t\|1q6t]], [[1qxk\|1qxk]], [[1sug\|1sug]], [[1t48\|1t48]], [[1t49\|1t49]], [[1t4j\|1t4j]], [[1wax\|1wax]], [[1xbo\|1xbo]], [[2azr\|2azr]], [[2b07\|2b07]], [[2b4s\|2b4s]], [[2bgd\|2bgd]], [[2bge\|2bge]], [[2cm2\|2cm2]], [[2cm3\|2cm3]], [[2cm7\|2cm7]], [[2cm8\|2cm8]], [[2cma\|2cma]], [[2cmb\|2cmb]], [[2cmc\|2cmc]], [[2cne\|2cne]], [[2f6f\|2f6f]], [[2f6t\|2f6t]], [[2f6v\|2f6v]], [[2f6w\|2f6w]], [[2f6y\|2f6y]], [[2f6z\|2f6z]], [[2f70\|2f70]], [[2f71\|2f71]], [[2fjm\|2fjm]], [[2fjn\|2fjn]], [[2hnp\|2hnp]], [[2hnq\|2hnq]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1a5y\|1a5y]], [[1aax\|1aax]], [[1bzc\|1bzc]], [[1bzh\|1bzh]], [[1bzj\|1bzj]], [[1c83\|1c83]], [[1c84\|1c84]], [[1c85\|1c85]], [[1c86\|1c86]], [[1c87\|1c87]], [[1c88\|1c88]], [[1ecv\|1ecv]], [[1een\|1een]], [[1eeo\|1eeo]], [[1g1f\|1g1f]], [[1g1g\|1g1g]], [[1g1h\|1g1h]], [[1g7f\|1g7f]], [[1g7g\|1g7g]], [[1gfy\|1gfy]], [[1i57\|1i57]], [[1jf7\|1jf7]], [[1kak\|1kak]], [[1kav\|1kav]], [[1l8g\|1l8g]], [[1lqf\|1lqf]], [[1nl9\|1nl9]], [[1nny\|1nny]], [[1no6\|1no6]], [[1nwe\|1nwe]], [[1nwl\|1nwl]], [[1nz7\|1nz7]], [[1oem\|1oem]], [[1oeo\|1oeo]], [[1oes\|1oes]], [[1oet\|1oet]], [[1oeu\|1oeu]], [[1oev\|1oev]], [[1ony\|1ony]], [[1onz\|1onz]], [[1pa1\|1pa1]], [[1ph0\|1ph0]], [[1ptt\|1ptt]], [[1ptu\|1ptu]], [[1ptv\|1ptv]], [[1pty\|1pty]], [[1pxh\|1pxh]], [[1pyn\|1pyn]], [[1q1m\|1q1m]], [[1q6j\|1q6j]], [[1q6m\|1q6m]], [[1q6n\|1q6n]], [[1q6p\|1q6p]], [[1q6s\|1q6s]], [[1q6t\|1q6t]], [[1qxk\|1qxk]], [[1sug\|1sug]], [[1t48\|1t48]], [[1t49\|1t49]], [[1t4j\|1t4j]], [[1wax\|1wax]], [[1xbo\|1xbo]], [[2azr\|2azr]], [[2b07\|2b07]], [[2b4s\|2b4s]], [[2bgd\|2bgd]], [[2bge\|2bge]], [[2cm2\|2cm2]], [[2cm3\|2cm3]], [[2cm7\|2cm7]], [[2cm8\|2cm8]], [[2cma\|2cma]], [[2cmb\|2cmb]], [[2cmc\|2cmc]], [[2cne\|2cne]], [[2f6f\|2f6f]], [[2f6t\|2f6t]], [[2f6v\|2f6v]], [[2f6w\|2f6w]], [[2f6y\|2f6y]], [[2f6z\|2f6z]], [[2f70\|2f70]], [[2f71\|2f71]], [[2fjm\|2fjm]], [[2fjn\|2fjn]], [[2hnp\|2hnp]], [[2hnq\|2hnq]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Protein-tyrosine-phosphatase Protein-tyrosine-phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.48 3.1.3.48] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Protein-tyrosine-phosphatase Protein-tyrosine-phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.48 3.1.3.48] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cnf OCA], [http://pdbe.org/2cnf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2cnf RCSB], [http://www.ebi.ac.uk/pdbsum/2cnf PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cnf OCA], [http://pdbe.org/2cnf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2cnf RCSB], [http://www.ebi.ac.uk/pdbsum/2cnf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2cnf ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 29:		Line 30:
	</div>		</div>
	<div class="pdbe-citations 2cnf" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 2cnf" style="background-color:#fffaf0;"></div>
-
-	==See Also==
-	*[[Tyrosine phosphatase\|Tyrosine phosphatase]]
	== References ==		== References ==
	<references/>		<references/>
Line 48:		Line 46:
	[[Category: Hillman, M]]		[[Category: Hillman, M]]
	[[Category: Hollis, G F]]		[[Category: Hollis, G F]]
-	[[Category: ~~Mclaughlin~~, E]]	+	[[Category: McLaughlin, E]]
	[[Category: Polam, P]]		[[Category: Polam, P]]
	[[Category: Sparks, R B]]		[[Category: Sparks, R B]]
Line 55:		Line 53:
	[[Category: Wynn, R]]		[[Category: Wynn, R]]
	[[Category: Yue, E W]]		[[Category: Yue, E W]]
		+	[[Category: Acetylation]]
	[[Category: Endoplasmic reticulum]]		[[Category: Endoplasmic reticulum]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]
Line 60:		Line 59:
	[[Category: Phosphatase]]		[[Category: Phosphatase]]
	[[Category: Phosphorylation]]		[[Category: Phosphorylation]]
		+	[[Category: Polymorphism]]
	[[Category: Protein phosphatase]]		[[Category: Protein phosphatase]]

OCA at 13:25, 8 February 2016

OCA — Mon, 08 Feb 2016 13:25:03 GMT

←Older revision		Revision as of 13:25, 8 February 2016
Line 18:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cnf ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 11:59, 10 September 2015

OCA — Thu, 10 Sep 2015 11:59:55 GMT

←Older revision		Revision as of 11:59, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='2cnf' size='340' side='right' caption='[[2cnf]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='2cnf' size='340' side='right' caption='[[2cnf]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2cnf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Homo_sapiens Homo sapiens~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CNF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CNF FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2cnf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CNF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CNF FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=F32:(5S)-5-{4-[(2S)-2-(1H-BENZIMIDAZOL-2-YL)-2-(1,3-BENZOTHIAZOL-2-YLAMINO)ETHYL]PHENYL}ISOTHIAZOLIDIN-3-ONE+1,1-DIOXIDE'>F32</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=F32:(5S)-5-{4-[(2S)-2-(1H-BENZIMIDAZOL-2-YL)-2-(1,3-BENZOTHIAZOL-2-YLAMINO)ETHYL]PHENYL}ISOTHIAZOLIDIN-3-ONE+1,1-DIOXIDE'>F32</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1a5y\|1a5y]], [[1aax\|1aax]], [[1bzc\|1bzc]], [[1bzh\|1bzh]], [[1bzj\|1bzj]], [[1c83\|1c83]], [[1c84\|1c84]], [[1c85\|1c85]], [[1c86\|1c86]], [[1c87\|1c87]], [[1c88\|1c88]], [[1ecv\|1ecv]], [[1een\|1een]], [[1eeo\|1eeo]], [[1g1f\|1g1f]], [[1g1g\|1g1g]], [[1g1h\|1g1h]], [[1g7f\|1g7f]], [[1g7g\|1g7g]], [[1gfy\|1gfy]], [[1i57\|1i57]], [[1jf7\|1jf7]], [[1kak\|1kak]], [[1kav\|1kav]], [[1l8g\|1l8g]], [[1lqf\|1lqf]], [[1nl9\|1nl9]], [[1nny\|1nny]], [[1no6\|1no6]], [[1nwe\|1nwe]], [[1nwl\|1nwl]], [[1nz7\|1nz7]], [[1oem\|1oem]], [[1oeo\|1oeo]], [[1oes\|1oes]], [[1oet\|1oet]], [[1oeu\|1oeu]], [[1oev\|1oev]], [[1ony\|1ony]], [[1onz\|1onz]], [[1pa1\|1pa1]], [[1ph0\|1ph0]], [[1ptt\|1ptt]], [[1ptu\|1ptu]], [[1ptv\|1ptv]], [[1pty\|1pty]], [[1pxh\|1pxh]], [[1pyn\|1pyn]], [[1q1m\|1q1m]], [[1q6j\|1q6j]], [[1q6m\|1q6m]], [[1q6n\|1q6n]], [[1q6p\|1q6p]], [[1q6s\|1q6s]], [[1q6t\|1q6t]], [[1qxk\|1qxk]], [[1sug\|1sug]], [[1t48\|1t48]], [[1t49\|1t49]], [[1t4j\|1t4j]], [[1wax\|1wax]], [[1xbo\|1xbo]], [[2azr\|2azr]], [[2b07\|2b07]], [[2b4s\|2b4s]], [[2bgd\|2bgd]], [[2bge\|2bge]], [[2cm2\|2cm2]], [[2cm3\|2cm3]], [[2cm7\|2cm7]], [[2cm8\|2cm8]], [[2cma\|2cma]], [[2cmb\|2cmb]], [[2cmc\|2cmc]], [[2cne\|2cne]], [[2f6f\|2f6f]], [[2f6t\|2f6t]], [[2f6v\|2f6v]], [[2f6w\|2f6w]], [[2f6y\|2f6y]], [[2f6z\|2f6z]], [[2f70\|2f70]], [[2f71\|2f71]], [[2fjm\|2fjm]], [[2fjn\|2fjn]], [[2hnp\|2hnp]], [[2hnq\|2hnq]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1a5y\|1a5y]], [[1aax\|1aax]], [[1bzc\|1bzc]], [[1bzh\|1bzh]], [[1bzj\|1bzj]], [[1c83\|1c83]], [[1c84\|1c84]], [[1c85\|1c85]], [[1c86\|1c86]], [[1c87\|1c87]], [[1c88\|1c88]], [[1ecv\|1ecv]], [[1een\|1een]], [[1eeo\|1eeo]], [[1g1f\|1g1f]], [[1g1g\|1g1g]], [[1g1h\|1g1h]], [[1g7f\|1g7f]], [[1g7g\|1g7g]], [[1gfy\|1gfy]], [[1i57\|1i57]], [[1jf7\|1jf7]], [[1kak\|1kak]], [[1kav\|1kav]], [[1l8g\|1l8g]], [[1lqf\|1lqf]], [[1nl9\|1nl9]], [[1nny\|1nny]], [[1no6\|1no6]], [[1nwe\|1nwe]], [[1nwl\|1nwl]], [[1nz7\|1nz7]], [[1oem\|1oem]], [[1oeo\|1oeo]], [[1oes\|1oes]], [[1oet\|1oet]], [[1oeu\|1oeu]], [[1oev\|1oev]], [[1ony\|1ony]], [[1onz\|1onz]], [[1pa1\|1pa1]], [[1ph0\|1ph0]], [[1ptt\|1ptt]], [[1ptu\|1ptu]], [[1ptv\|1ptv]], [[1pty\|1pty]], [[1pxh\|1pxh]], [[1pyn\|1pyn]], [[1q1m\|1q1m]], [[1q6j\|1q6j]], [[1q6m\|1q6m]], [[1q6n\|1q6n]], [[1q6p\|1q6p]], [[1q6s\|1q6s]], [[1q6t\|1q6t]], [[1qxk\|1qxk]], [[1sug\|1sug]], [[1t48\|1t48]], [[1t49\|1t49]], [[1t4j\|1t4j]], [[1wax\|1wax]], [[1xbo\|1xbo]], [[2azr\|2azr]], [[2b07\|2b07]], [[2b4s\|2b4s]], [[2bgd\|2bgd]], [[2bge\|2bge]], [[2cm2\|2cm2]], [[2cm3\|2cm3]], [[2cm7\|2cm7]], [[2cm8\|2cm8]], [[2cma\|2cma]], [[2cmb\|2cmb]], [[2cmc\|2cmc]], [[2cne\|2cne]], [[2f6f\|2f6f]], [[2f6t\|2f6t]], [[2f6v\|2f6v]], [[2f6w\|2f6w]], [[2f6y\|2f6y]], [[2f6z\|2f6z]], [[2f70\|2f70]], [[2f71\|2f71]], [[2fjm\|2fjm]], [[2fjn\|2fjn]], [[2hnp\|2hnp]], [[2hnq\|2hnq]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Protein-tyrosine-phosphatase Protein-tyrosine-phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.48 3.1.3.48] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Protein-tyrosine-phosphatase Protein-tyrosine-phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.48 3.1.3.48] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cnf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2cnf RCSB], [http://www.ebi.ac.uk/pdbsum/2cnf PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cnf OCA], [http://pdbe.org/2cnf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2cnf RCSB], [http://www.ebi.ac.uk/pdbsum/2cnf PDBsum]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 28:		Line 28:
	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>		From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
	</div>		</div>
		+	<div class="pdbe-citations 2cnf" style="background-color:#fffaf0;"></div>

	==See Also==		==See Also==
Line 35:		Line 36:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Homo sapiens~~]]	+	[[Category: Human]]
	[[Category: Protein-tyrosine-phosphatase]]		[[Category: Protein-tyrosine-phosphatase]]
	[[Category: Ala, P J]]		[[Category: Ala, P J]]

OCA at 23:38, 24 December 2014

OCA — Wed, 24 Dec 2014 23:38:47 GMT

←Older revision		Revision as of 23:38, 24 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2cnf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CNF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CNF FirstGlance]. <br>		<table><tr><td colspan='2'>[[2cnf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CNF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CNF FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=F32:(5S)-5-{4-[(2S)-2-(1H-BENZIMIDAZOL-2-YL)-2-(1,3-BENZOTHIAZOL-2-YLAMINO)ETHYL]PHENYL}ISOTHIAZOLIDIN-3-ONE+1,1-DIOXIDE'>F32</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=F32:(5S)-5-{4-[(2S)-2-(1H-BENZIMIDAZOL-2-YL)-2-(1,3-BENZOTHIAZOL-2-YLAMINO)ETHYL]PHENYL}ISOTHIAZOLIDIN-3-ONE+1,1-DIOXIDE'>F32</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1a5y\|1a5y]], [[1aax\|1aax]], [[1bzc\|1bzc]], [[1bzh\|1bzh]], [[1bzj\|1bzj]], [[1c83\|1c83]], [[1c84\|1c84]], [[1c85\|1c85]], [[1c86\|1c86]], [[1c87\|1c87]], [[1c88\|1c88]], [[1ecv\|1ecv]], [[1een\|1een]], [[1eeo\|1eeo]], [[1g1f\|1g1f]], [[1g1g\|1g1g]], [[1g1h\|1g1h]], [[1g7f\|1g7f]], [[1g7g\|1g7g]], [[1gfy\|1gfy]], [[1i57\|1i57]], [[1jf7\|1jf7]], [[1kak\|1kak]], [[1kav\|1kav]], [[1l8g\|1l8g]], [[1lqf\|1lqf]], [[1nl9\|1nl9]], [[1nny\|1nny]], [[1no6\|1no6]], [[1nwe\|1nwe]], [[1nwl\|1nwl]], [[1nz7\|1nz7]], [[1oem\|1oem]], [[1oeo\|1oeo]], [[1oes\|1oes]], [[1oet\|1oet]], [[1oeu\|1oeu]], [[1oev\|1oev]], [[1ony\|1ony]], [[1onz\|1onz]], [[1pa1\|1pa1]], [[1ph0\|1ph0]], [[1ptt\|1ptt]], [[1ptu\|1ptu]], [[1ptv\|1ptv]], [[1pty\|1pty]], [[1pxh\|1pxh]], [[1pyn\|1pyn]], [[1q1m\|1q1m]], [[1q6j\|1q6j]], [[1q6m\|1q6m]], [[1q6n\|1q6n]], [[1q6p\|1q6p]], [[1q6s\|1q6s]], [[1q6t\|1q6t]], [[1qxk\|1qxk]], [[1sug\|1sug]], [[1t48\|1t48]], [[1t49\|1t49]], [[1t4j\|1t4j]], [[1wax\|1wax]], [[1xbo\|1xbo]], [[2azr\|2azr]], [[2b07\|2b07]], [[2b4s\|2b4s]], [[2bgd\|2bgd]], [[2bge\|2bge]], [[2cm2\|2cm2]], [[2cm3\|2cm3]], [[2cm7\|2cm7]], [[2cm8\|2cm8]], [[2cma\|2cma]], [[2cmb\|2cmb]], [[2cmc\|2cmc]], [[2cne\|2cne]], [[2f6f\|2f6f]], [[2f6t\|2f6t]], [[2f6v\|2f6v]], [[2f6w\|2f6w]], [[2f6y\|2f6y]], [[2f6z\|2f6z]], [[2f70\|2f70]], [[2f71\|2f71]], [[2fjm\|2fjm]], [[2fjn\|2fjn]], [[2hnp\|2hnp]], [[2hnq\|2hnq]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1a5y\|1a5y]], [[1aax\|1aax]], [[1bzc\|1bzc]], [[1bzh\|1bzh]], [[1bzj\|1bzj]], [[1c83\|1c83]], [[1c84\|1c84]], [[1c85\|1c85]], [[1c86\|1c86]], [[1c87\|1c87]], [[1c88\|1c88]], [[1ecv\|1ecv]], [[1een\|1een]], [[1eeo\|1eeo]], [[1g1f\|1g1f]], [[1g1g\|1g1g]], [[1g1h\|1g1h]], [[1g7f\|1g7f]], [[1g7g\|1g7g]], [[1gfy\|1gfy]], [[1i57\|1i57]], [[1jf7\|1jf7]], [[1kak\|1kak]], [[1kav\|1kav]], [[1l8g\|1l8g]], [[1lqf\|1lqf]], [[1nl9\|1nl9]], [[1nny\|1nny]], [[1no6\|1no6]], [[1nwe\|1nwe]], [[1nwl\|1nwl]], [[1nz7\|1nz7]], [[1oem\|1oem]], [[1oeo\|1oeo]], [[1oes\|1oes]], [[1oet\|1oet]], [[1oeu\|1oeu]], [[1oev\|1oev]], [[1ony\|1ony]], [[1onz\|1onz]], [[1pa1\|1pa1]], [[1ph0\|1ph0]], [[1ptt\|1ptt]], [[1ptu\|1ptu]], [[1ptv\|1ptv]], [[1pty\|1pty]], [[1pxh\|1pxh]], [[1pyn\|1pyn]], [[1q1m\|1q1m]], [[1q6j\|1q6j]], [[1q6m\|1q6m]], [[1q6n\|1q6n]], [[1q6p\|1q6p]], [[1q6s\|1q6s]], [[1q6t\|1q6t]], [[1qxk\|1qxk]], [[1sug\|1sug]], [[1t48\|1t48]], [[1t49\|1t49]], [[1t4j\|1t4j]], [[1wax\|1wax]], [[1xbo\|1xbo]], [[2azr\|2azr]], [[2b07\|2b07]], [[2b4s\|2b4s]], [[2bgd\|2bgd]], [[2bge\|2bge]], [[2cm2\|2cm2]], [[2cm3\|2cm3]], [[2cm7\|2cm7]], [[2cm8\|2cm8]], [[2cma\|2cma]], [[2cmb\|2cmb]], [[2cmc\|2cmc]], [[2cne\|2cne]], [[2f6f\|2f6f]], [[2f6t\|2f6t]], [[2f6v\|2f6v]], [[2f6w\|2f6w]], [[2f6y\|2f6y]], [[2f6z\|2f6z]], [[2f70\|2f70]], [[2f71\|2f71]], [[2fjm\|2fjm]], [[2fjn\|2fjn]], [[2hnp\|2hnp]], [[2hnq\|2hnq]]</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Protein-tyrosine-phosphatase Protein-tyrosine-phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.48 3.1.3.48] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Protein-tyrosine-phosphatase Protein-tyrosine-phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.48 3.1.3.48] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cnf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2cnf RCSB], [http://www.ebi.ac.uk/pdbsum/2cnf PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cnf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2cnf RCSB], [http://www.ebi.ac.uk/pdbsum/2cnf PDBsum]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/PTN1_HUMAN PTN1_HUMAN]] Tyrosine-protein phosphatase which acts as a regulator of endoplasmic reticulum unfolded protein response. Mediates dephosphorylation of EIF2AK3/PERK; inactivating the protein kinase activity of EIF2AK3/PERK. May play an important role in CKII- and p60c-src-induced signal transduction cascades. May regulate the EFNA5-EPHA3 signaling pathway which modulates cell reorganization and cell-cell repulsion.<ref>PMID:21135139</ref> <ref>PMID:22169477</ref>
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 35:		Line 37:
	[[Category: Homo sapiens]]		[[Category: Homo sapiens]]
	[[Category: Protein-tyrosine-phosphatase]]		[[Category: Protein-tyrosine-phosphatase]]
-	[[Category: Ala, P J.]]	+	[[Category: Ala, P J]]
-	[[Category: Becker-Pasha, M.]]	+	[[Category: Becker-Pasha, M]]
-	[[Category: Burn, T C.]]	+	[[Category: Burn, T C]]
-	[[Category: Combs, A P.]]	+	[[Category: Combs, A P]]
-	[[Category: Crawley, M L.]]	+	[[Category: Crawley, M L]]
-	[[Category: Douty, B.]]	+	[[Category: Douty, B]]
-	[[Category: Glass, B.]]	+	[[Category: Glass, B]]
-	[[Category: Gonneville, L.]]	+	[[Category: Gonneville, L]]
-	[[Category: Hillman, M.]]	+	[[Category: Hillman, M]]
-	[[Category: Hollis, G F.]]	+	[[Category: Hollis, G F]]
-	[[Category: Mclaughlin, E.]]	+	[[Category: Mclaughlin, E]]
-	[[Category: Polam, P.]]	+	[[Category: Polam, P]]
-	[[Category: Sparks, R B.]]	+	[[Category: Sparks, R B]]
-	[[Category: Takvorian, A.]]	+	[[Category: Takvorian, A]]
-	[[Category: Wayland, B.]]	+	[[Category: Wayland, B]]
-	[[Category: Wynn, R.]]	+	[[Category: Wynn, R]]
-	[[Category: Yue, E W.]]	+	[[Category: Yue, E W]]
	[[Category: Endoplasmic reticulum]]		[[Category: Endoplasmic reticulum]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 03:36, 29 September 2014

OCA — Mon, 29 Sep 2014 03:36:01 GMT

←Older revision		Revision as of 03:36, 29 September 2014
Line 1:		Line 1:
-	[[~~Image:~~2cnf.~~png~~\|~~left~~\|200px]]	+	==STRUCTURAL INSIGHTS INTO THE DESIGN OF NONPEPTIDIC ISOTHIAZOLIDINONE-CONTAINING INHIBITORS OF PROTEIN TYROSINE PHOSPHATASE 1B==
		+	<StructureSection load='2cnf' size='340' side='right' caption='[[2cnf]], [[Resolution\|resolution]] 2.20Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[2cnf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CNF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2CNF FirstGlance]. <br>
		+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=F32:(5S)-5-{4-[(2S)-2-(1H-BENZIMIDAZOL-2-YL)-2-(1,3-BENZOTHIAZOL-2-YLAMINO)ETHYL]PHENYL}ISOTHIAZOLIDIN-3-ONE+1,1-DIOXIDE'>F32</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene><br>
		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1a5y\|1a5y]], [[1aax\|1aax]], [[1bzc\|1bzc]], [[1bzh\|1bzh]], [[1bzj\|1bzj]], [[1c83\|1c83]], [[1c84\|1c84]], [[1c85\|1c85]], [[1c86\|1c86]], [[1c87\|1c87]], [[1c88\|1c88]], [[1ecv\|1ecv]], [[1een\|1een]], [[1eeo\|1eeo]], [[1g1f\|1g1f]], [[1g1g\|1g1g]], [[1g1h\|1g1h]], [[1g7f\|1g7f]], [[1g7g\|1g7g]], [[1gfy\|1gfy]], [[1i57\|1i57]], [[1jf7\|1jf7]], [[1kak\|1kak]], [[1kav\|1kav]], [[1l8g\|1l8g]], [[1lqf\|1lqf]], [[1nl9\|1nl9]], [[1nny\|1nny]], [[1no6\|1no6]], [[1nwe\|1nwe]], [[1nwl\|1nwl]], [[1nz7\|1nz7]], [[1oem\|1oem]], [[1oeo\|1oeo]], [[1oes\|1oes]], [[1oet\|1oet]], [[1oeu\|1oeu]], [[1oev\|1oev]], [[1ony\|1ony]], [[1onz\|1onz]], [[1pa1\|1pa1]], [[1ph0\|1ph0]], [[1ptt\|1ptt]], [[1ptu\|1ptu]], [[1ptv\|1ptv]], [[1pty\|1pty]], [[1pxh\|1pxh]], [[1pyn\|1pyn]], [[1q1m\|1q1m]], [[1q6j\|1q6j]], [[1q6m\|1q6m]], [[1q6n\|1q6n]], [[1q6p\|1q6p]], [[1q6s\|1q6s]], [[1q6t\|1q6t]], [[1qxk\|1qxk]], [[1sug\|1sug]], [[1t48\|1t48]], [[1t49\|1t49]], [[1t4j\|1t4j]], [[1wax\|1wax]], [[1xbo\|1xbo]], [[2azr\|2azr]], [[2b07\|2b07]], [[2b4s\|2b4s]], [[2bgd\|2bgd]], [[2bge\|2bge]], [[2cm2\|2cm2]], [[2cm3\|2cm3]], [[2cm7\|2cm7]], [[2cm8\|2cm8]], [[2cma\|2cma]], [[2cmb\|2cmb]], [[2cmc\|2cmc]], [[2cne\|2cne]], [[2f6f\|2f6f]], [[2f6t\|2f6t]], [[2f6v\|2f6v]], [[2f6w\|2f6w]], [[2f6y\|2f6y]], [[2f6z\|2f6z]], [[2f70\|2f70]], [[2f71\|2f71]], [[2fjm\|2fjm]], [[2fjn\|2fjn]], [[2hnp\|2hnp]], [[2hnq\|2hnq]]</td></tr>
		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Protein-tyrosine-phosphatase Protein-tyrosine-phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.48 3.1.3.48] </span></td></tr>
		+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2cnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cnf OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2cnf RCSB], [http://www.ebi.ac.uk/pdbsum/2cnf PDBsum]</span></td></tr>
		+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cn/2cnf_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Structural analyses of the protein-tyrosine phosphatase 1B (PTP1B) active site and inhibitor complexes have aided in optimization of a peptide inhibitor containing the novel (S)-isothiazolidinone (IZD) phosphonate mimetic. Potency and permeability were simultaneously improved by replacing the polar peptidic backbone of the inhibitor with nonpeptidic moieties. The C-terminal primary amide was replaced with a benzimidazole ring, which hydrogen bonds to the carboxylate of Asp(48), and the N terminus of the peptide was replaced with an aryl sulfonamide, which hydrogen bonds to Asp(48) and the backbone NH of Arg(47) via a water molecule. Although both substituents retain the favorable hydrogen bonding network of the peptide scaffold, their aryl rings interact weakly with the protein. The aryl ring of benzimidazole is partially solvent exposed and only participates in van der Waals interactions with Phe(182) of the flap. The aryl ring of aryl sulfonamide adopts an unexpected conformation and only participates in intramolecular pi-stacking interactions with the benzimidazole ring. These results explain the flat SAR for substitutions on both rings and the reason why unsubstituted moieties were selected as candidates. Finally, substituents ortho to the IZD heterocycle on the aryl ring of the IZD-phenyl moiety bind in a small narrow site adjacent to the primary phosphate binding pocket. The crystal structure of an o-chloro derivative reveals that chlorine interacts extensively with residues in the small site. The structural insights that have led to the discovery of potent benzimidazole aryl sulfonamide o-substituted derivatives are discussed in detail.

-	~~{{STRUCTURE_2cnf\| PDB=2cnf \| SCENE= }}~~	+	Structural insights into the design of nonpeptidic isothiazolidinone-containing inhibitors of protein-tyrosine phosphatase 1B.,Ala PJ, Gonneville L, Hillman M, Becker-Pasha M, Yue EW, Douty B, Wayland B, Polam P, Crawley ML, McLaughlin E, Sparks RB, Glass B, Takvorian A, Combs AP, Burn TC, Hollis GF, Wynn R J Biol Chem. 2006 Dec 8;281(49):38013-21. Epub 2006 Oct 6. PMID:17028182<ref>PMID:17028182</ref>

-	~~===STRUCTURAL INSIGHTS INTO THE DESIGN OF NONPEPTIDIC ISOTHIAZOLIDINONE-CONTAINING INHIBITORS OF PROTEIN TYROSINE PHOSPHATASE 1B===~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~{{ABSTRACT_PUBMED_17028182}}~~	+
-		+
-	~~==About this Structure==~~	+
-	~~[[2cnf]] is~~ a ~~1 chain structure with sequence from [http://en~~.~~wikipedia~~.~~org/wiki/Homo_sapiens Homo sapiens]~~. ~~Full crystallographic information is available from [http:~~/~~/oca.weizmann.ac.il/oca-bin/ocashort?id=2CNF OCA].~~	+

	==See Also==		==See Also==
	*[[Tyrosine phosphatase\|Tyrosine phosphatase]]		*[[Tyrosine phosphatase\|Tyrosine phosphatase]]
-		+	== References ==
-	==~~Reference~~==	+	<references/>
-	<~~ref group="xtra">PMID:017028182<~~/~~ref~~><~~references group="xtra"~~/>	+	__TOC__
		+	</StructureSection>
	[[Category: Homo sapiens]]		[[Category: Homo sapiens]]
	[[Category: Protein-tyrosine-phosphatase]]		[[Category: Protein-tyrosine-phosphatase]]

OCA at 10:17, 20 October 2012

OCA — Sat, 20 Oct 2012 10:17:18 GMT

←Older revision		Revision as of 10:17, 20 October 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[2cnf]] is a 1 chain structure ~~of [[Tyrosine phosphatase]]~~ with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CNF OCA].	+	[[2cnf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CNF OCA].

	==See Also==		==See Also==

OCA at 11:30, 14 August 2012

OCA — Tue, 14 Aug 2012 11:30:22 GMT

←Older revision		Revision as of 11:30, 14 August 2012
Line 8:		Line 8:

	==About this Structure==		==About this Structure==
-	[[2cnf]] is a 1 chain structure of ~~[[Proten tyrosine phosphatase]] and~~ [[Tyrosine phosphatase]] with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CNF OCA].	+	[[2cnf]] is a 1 chain structure of [[Tyrosine phosphatase]] with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CNF OCA].

	==See Also==		==See Also==
-	*[[Proten tyrosine phosphatase\|Proten tyrosine phosphatase]]
	*[[Tyrosine phosphatase\|Tyrosine phosphatase]]		*[[Tyrosine phosphatase\|Tyrosine phosphatase]]