2d5b - Revision history

OCA at 08:24, 25 October 2023

OCA — Wed, 25 Oct 2023 08:24:22 GMT

←Older revision		Revision as of 08:24, 25 October 2023
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	<StructureSection load='2d5b' size='340' side='right'caption='[[2d5b]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='2d5b' size='340' side='right'caption='[[2d5b]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2d5b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D5B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D5B FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2d5b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D5B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D5B FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~><div style='overflow: auto; max-height: 3em;'>[[1a8h\|1a8h]], [[1woy\|1woy]], [[2d54\|2d54]]</div></td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	~~<tr~~ id~~='activity'><td class~~="~~sblockLbl~~"><~~b>Activity:</b></td><td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[https://en.wikipedia.org/wiki/Methionine--tRNA_ligase Methionine--tRNA ligase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.10 6.1.1.10]~~ </~~span~~></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d5b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d5b OCA], [https://pdbe.org/2d5b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d5b RCSB], [https://www.ebi.ac.uk/pdbsum/2d5b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d5b ProSAT], [https://www.topsan.org/Proteins/RSGI/2d5b TOPSAN]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d5b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d5b OCA], [https://pdbe.org/2d5b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d5b RCSB], [https://www.ebi.ac.uk/pdbsum/2d5b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d5b ProSAT], [https://www.topsan.org/Proteins/RSGI/2d5b TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/SYM_THET8 SYM_THET8]] Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.	+	[https://www.uniprot.org/uniprot/SYM_THET8 SYM_THET8] Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 26:		Line 25:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Methionine--tRNA ligase~~]]	+	[[Category: Thermus thermophilus]]
-	[[Category: Ishii, R]]	+	[[Category: Ishii R]]
-	[[Category: Konno, M]]	+	[[Category: Konno M]]
-	[[Category: Mori, Y]]	+	[[Category: Mori Y]]
-	~~[[Category: Structural genomic~~]]	+	[[Category: Takasaka R]]
-	[[Category: Takasaka, R]]	+	[[Category: Takeda R]]
-	[[Category: Takeda, R]]	+	[[Category: Yokoyama S]]
-	[[Category: Yokoyama, S]]	+
-	~~[[Category: Class 1a aar]]~~	+
-	~~[[Category: Isomerase]]~~	+
-	~~[[Category: National project on protein structural and functional analyse]]~~	+
-	~~[[Category: Nppsfa]]~~	+
-	~~[[Category: Rossmann fold]]~~	+
-	~~[[Category: Rsgi~~]]	+

OCA at 06:48, 10 November 2021

OCA — Wed, 10 Nov 2021 06:48:52 GMT

←Older revision		Revision as of 06:48, 10 November 2021
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	<StructureSection load='2d5b' size='340' side='right'caption='[[2d5b]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='2d5b' size='340' side='right'caption='[[2d5b]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2d5b]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D5B OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2D5B FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2d5b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D5B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D5B FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1a8h\|1a8h]], [[1woy\|1woy]], [[2d54\|2d54]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1a8h\|1a8h]], [[1woy\|1woy]], [[2d54\|2d54]]</div></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://en.wikipedia.org/wiki/Methionine--tRNA_ligase Methionine--tRNA ligase], with EC number [~~http~~://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.10 6.1.1.10] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Methionine--tRNA_ligase Methionine--tRNA ligase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.10 6.1.1.10] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=2d5b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d5b OCA], [~~http~~://pdbe.org/2d5b PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=2d5b RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/2d5b PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=2d5b ProSAT], [~~http~~://www.topsan.org/Proteins/RSGI/2d5b TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d5b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d5b OCA], [https://pdbe.org/2d5b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d5b RCSB], [https://www.ebi.ac.uk/pdbsum/2d5b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d5b ProSAT], [https://www.topsan.org/Proteins/RSGI/2d5b TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/SYM_THET8 SYM_THET8]] Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.	+	[[https://www.uniprot.org/uniprot/SYM_THET8 SYM_THET8]] Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]

OCA at 08:01, 4 March 2020

OCA — Wed, 04 Mar 2020 08:01:40 GMT

←Older revision		Revision as of 08:01, 4 March 2020
Line 1:		Line 1:

	==Crystal Structure of Thermus Thermophilus Methionyl tRNA synthetase Y225F Mutant obtained in the presence of PEG6000==		==Crystal Structure of Thermus Thermophilus Methionyl tRNA synthetase Y225F Mutant obtained in the presence of PEG6000==
-	<StructureSection load='2d5b' size='340' side='right' caption='[[2d5b]], [[Resolution\|resolution]] 1.80Å' scene=''>	+	<StructureSection load='2d5b' size='340' side='right'caption='[[2d5b]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2d5b]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D5B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2D5B FirstGlance]. <br>		<table><tr><td colspan='2'>[[2d5b]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D5B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2D5B FirstGlance]. <br>
Line 23:		Line 23:

	==See Also==		==See Also==
-	*[[Aminoacyl tRNA ~~Synthetase~~\|Aminoacyl tRNA ~~Synthetase~~]]	+	*[[Aminoacyl tRNA synthetase 3D structures\|Aminoacyl tRNA synthetase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]		[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
		+	[[Category: Large Structures]]
	[[Category: Methionine--tRNA ligase]]		[[Category: Methionine--tRNA ligase]]
	[[Category: Ishii, R]]		[[Category: Ishii, R]]

OCA at 06:57, 30 May 2018

OCA — Wed, 30 May 2018 06:57:06 GMT

←Older revision		Revision as of 06:57, 30 May 2018
Line 1:		Line 1:
		+
	==Crystal Structure of Thermus Thermophilus Methionyl tRNA synthetase Y225F Mutant obtained in the presence of PEG6000==		==Crystal Structure of Thermus Thermophilus Methionyl tRNA synthetase Y225F Mutant obtained in the presence of PEG6000==
	<StructureSection load='2d5b' size='340' side='right' caption='[[2d5b]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='2d5b' size='340' side='right' caption='[[2d5b]], [[Resolution\|resolution]] 1.80Å' scene=''>
Line 6:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1a8h\|1a8h]], [[1woy\|1woy]], [[2d54\|2d54]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1a8h\|1a8h]], [[1woy\|1woy]], [[2d54\|2d54]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Methionine--tRNA_ligase Methionine--tRNA ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.10 6.1.1.10] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Methionine--tRNA_ligase Methionine--tRNA ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.10 6.1.1.10] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d5b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d5b OCA], [http://pdbe.org/2d5b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2d5b RCSB], [http://www.ebi.ac.uk/pdbsum/2d5b PDBsum], [http://www.topsan.org/Proteins/RSGI/2d5b TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d5b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d5b OCA], [http://pdbe.org/2d5b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2d5b RCSB], [http://www.ebi.ac.uk/pdbsum/2d5b PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2d5b ProSAT], [http://www.topsan.org/Proteins/RSGI/2d5b TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 14:		Line 15:
	Check<jmol>		Check<jmol>
	<jmolCheckbox>		<jmolCheckbox>
-	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d5/2d5b_consurf.spt"</scriptWhenChecked>	+	<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d5/2d5b_consurf.spt"</scriptWhenChecked>
	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>		<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>

OCA at 05:24, 9 February 2016

OCA — Tue, 09 Feb 2016 05:24:15 GMT

←Older revision		Revision as of 05:24, 9 February 2016
Line 18:		Line 18:
	<text>to colour the structure by Evolutionary Conservation</text>		<text>to colour the structure by Evolutionary Conservation</text>
	</jmolCheckbox>		</jmolCheckbox>
-	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/~~chain_selection~~.php?pdb_ID=~~2ata~~ ConSurf].	+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d5b ConSurf].
	<div style="clear:both"></div>		<div style="clear:both"></div>

OCA at 19:03, 10 September 2015

OCA — Thu, 10 Sep 2015 19:03:16 GMT

←Older revision		Revision as of 19:03, 10 September 2015
Line 2:		Line 2:
	<StructureSection load='2d5b' size='340' side='right' caption='[[2d5b]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='2d5b' size='340' side='right' caption='[[2d5b]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[2d5b]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/~~Thermus_thermophilus Thermus thermophilus~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D5B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2D5B FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[2d5b]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D5B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2D5B FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1a8h\|1a8h]], [[1woy\|1woy]], [[2d54\|2d54]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1a8h\|1a8h]], [[1woy\|1woy]], [[2d54\|2d54]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Methionine--tRNA_ligase Methionine--tRNA ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.10 6.1.1.10] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Methionine--tRNA_ligase Methionine--tRNA ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.10 6.1.1.10] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d5b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d5b OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2d5b RCSB], [http://www.ebi.ac.uk/pdbsum/2d5b PDBsum], [http://www.topsan.org/Proteins/RSGI/2d5b TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d5b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d5b OCA], [http://pdbe.org/2d5b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2d5b RCSB], [http://www.ebi.ac.uk/pdbsum/2d5b PDBsum], [http://www.topsan.org/Proteins/RSGI/2d5b TOPSAN]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 25:		Line 25:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Flavobacterium thermophilum yoshida and oshima 1971]]
	[[Category: Methionine--tRNA ligase]]		[[Category: Methionine--tRNA ligase]]
-	[[Category: Thermus thermophilus]]
	[[Category: Ishii, R]]		[[Category: Ishii, R]]
	[[Category: Konno, M]]		[[Category: Konno, M]]

OCA at 04:43, 25 December 2014

OCA — Thu, 25 Dec 2014 04:43:56 GMT

←Older revision		Revision as of 04:43, 25 December 2014
Line 3:		Line 3:
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[2d5b]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D5B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2D5B FirstGlance]. <br>		<table><tr><td colspan='2'>[[2d5b]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D5B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2D5B FirstGlance]. <br>
-	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1a8h\|1a8h]], [[1woy\|1woy]], [[2d54\|2d54]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1a8h\|1a8h]], [[1woy\|1woy]], [[2d54\|2d54]]</td></tr>
-	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Methionine--tRNA_ligase Methionine--tRNA ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.10 6.1.1.10] </span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Methionine--tRNA_ligase Methionine--tRNA ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.10 6.1.1.10] </span></td></tr>
-	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d5b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d5b OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2d5b RCSB], [http://www.ebi.ac.uk/pdbsum/2d5b PDBsum], [http://www.topsan.org/Proteins/RSGI/2d5b TOPSAN]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d5b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d5b OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2d5b RCSB], [http://www.ebi.ac.uk/pdbsum/2d5b PDBsum], [http://www.topsan.org/Proteins/RSGI/2d5b TOPSAN]</span></td></tr>
-	<table>	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/SYM_THET8 SYM_THET8]] Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
	== Evolutionary Conservation ==		== Evolutionary Conservation ==
	[[Image:Consurf_key_small.gif\|200px\|right]]		[[Image:Consurf_key_small.gif\|200px\|right]]
Line 25:		Line 27:
	[[Category: Methionine--tRNA ligase]]		[[Category: Methionine--tRNA ligase]]
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]
-	[[Category: Ishii, R.]]	+	[[Category: Ishii, R]]
-	[[Category: Konno, M.]]	+	[[Category: Konno, M]]
-	[[Category: Mori, Y.]]	+	[[Category: Mori, Y]]
-	[[Category: ~~RSGI, RIKEN~~ Structural ~~Genomics/Proteomics Initiative.~~]]	+	[[Category: Structural genomic]]
-	[[Category: Takasaka, R.]]	+	[[Category: Takasaka, R]]
-	[[Category: Takeda, R.]]	+	[[Category: Takeda, R]]
-	[[Category: Yokoyama, S.]]	+	[[Category: Yokoyama, S]]
	[[Category: Class 1a aar]]		[[Category: Class 1a aar]]
	[[Category: Isomerase]]		[[Category: Isomerase]]
	[[Category: National project on protein structural and functional analyse]]		[[Category: National project on protein structural and functional analyse]]
	[[Category: Nppsfa]]		[[Category: Nppsfa]]
-	[[Category: Riken structural genomics/proteomics initiative]]
	[[Category: Rossmann fold]]		[[Category: Rossmann fold]]
	[[Category: Rsgi]]		[[Category: Rsgi]]
-	[[Category: Structural genomic]]

OCA at 04:22, 29 September 2014

OCA — Mon, 29 Sep 2014 04:22:59 GMT

←Older revision		Revision as of 04:22, 29 September 2014
Line 1:		Line 1:
-	~~[[Image:2d5b.png\|left\|200px]]~~	+	==Crystal Structure of Thermus Thermophilus Methionyl tRNA synthetase Y225F Mutant obtained in the presence of PEG6000==
-		+	<StructureSection load='2d5b' size='340' side='right' caption='[[2d5b]], [[Resolution\|resolution]] 1.80Å' scene=''>
-	~~{{STRUCTURE_2d5b\| PDB=2d5b \| SCENE= }}~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[2d5b]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D5B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2D5B FirstGlance]. <br>
-	===Crystal Structure of Thermus Thermophilus Methionyl tRNA synthetase Y225F Mutant obtained in the presence of PEG6000===	+	</td></tr><tr><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene><br>
-		+	<tr><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[1a8h\|1a8h]], [[1woy\|1woy]], [[2d54\|2d54]]</td></tr>
-		+	<tr><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Methionine--tRNA_ligase Methionine--tRNA ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.10 6.1.1.10] </span></td></tr>
-	==~~About this Structure~~==	+	<tr><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2d5b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d5b OCA], [http://www.rcsb.org/pdb/explore.do?structureId=2d5b RCSB], [http://www.ebi.ac.uk/pdbsum/2d5b PDBsum], [http://www.topsan.org/Proteins/RSGI/2d5b TOPSAN]</span></td></tr>
-	[[2d5b]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D5B OCA].	+	<table>
		+	== Evolutionary Conservation ==
		+	[[Image:Consurf_key_small.gif\|200px\|right]]
		+	Check<jmol>
		+	<jmolCheckbox>
		+	<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d5/2d5b_consurf.spt"</scriptWhenChecked>
		+	<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
		+	<text>to colour the structure by Evolutionary Conservation</text>
		+	</jmolCheckbox>
		+	</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary\|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/chain_selection.php?pdb_ID=2ata ConSurf].
		+	<div style="clear:both"></div>

	==See Also==		==See Also==
	*[[Aminoacyl tRNA Synthetase\|Aminoacyl tRNA Synthetase]]		*[[Aminoacyl tRNA Synthetase\|Aminoacyl tRNA Synthetase]]
		+	__TOC__
		+	</StructureSection>
	[[Category: Methionine--tRNA ligase]]		[[Category: Methionine--tRNA ligase]]
	[[Category: Thermus thermophilus]]		[[Category: Thermus thermophilus]]

OCA at 12:47, 20 October 2012

OCA — Sat, 20 Oct 2012 12:47:10 GMT

←Older revision		Revision as of 12:47, 20 October 2012
Line 7:		Line 7:

	==About this Structure==		==About this Structure==
-	[[2d5b]] is a 1 chain structure ~~of [[Aminoacyl tRNA Synthetase]]~~ with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D5B OCA].	+	[[2d5b]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D5B OCA].

	==See Also==		==See Also==

OCA: Protected "2d5b" [edit=sysop:move=sysop]

OCA — Thu, 26 Jul 2012 09:52:50 GMT

Protected "2d5b" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:52, 26 July 2012